Contig 004573:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028P06Sequence528004573 (3)ref|XP_009594442.1|4e-90PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
JMFS132B12Sequence625004573 (3)ref|XP_009594442.1|4e-106PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
JMSF026D17Sequence608004573 (3)ref|XP_009780620.1|5e-94PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]780015049emb|CAC87837.1|2e-79cullin 1C [Nicotiana tabacum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D17+                                                      ATTCAACTCTTGATACA
JMFS132B12+                 GATCAATCAAGGATATGACAGCATCCCTTACTTTTCCATTCAACTCTTGATACA
                      ____________________________________________________________
consensus                   GATCAATCAAGGATATGACAGCATCCCTTACTTTTCCATTCAACTCTTGATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D17+           CCAGATTTCGGAAACAAGTTAATCCAACTTCANTGAGTGCCGGTAGGGATCTCCGAGCAA
JMFS132B12+           CCAGATTTCGGAAACAAGTTAATCCAACTTCATTGAGTGCCGGTAGGGATCTCCGAGCAA
JMFF028P06+                            GTTAATCCAACTTCATTGAGTGCCGGTAGGGATCTCCGAGCAA
                      ____________________________________________________________
consensus             CCAGATTTCGGAAACAAGTTAATCCAACTTCATTGAGTGCCGGTAGGGATCTCCGAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D17+           TAAAATAACGATCTAGGTAATGGAAGAATCTTGACAACCATCTAACCATGATTTTATGAT
JMFS132B12+           TAAAATAACGATCTAGGTAATGGAAGAATCTTGACAACCATCTAACCATGATTTTATGAT
JMFF028P06+           TAAAATAACGATCTAGGTAATGGAAGAATCTTGACAACCATCTAACCATGATTTTATGAT
                      ____________________________________________________________
consensus             TAAAATAACGATCTAGGTAATGGAAGAATCTTGACAACCATCTAACCATGATTTTATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D17+           TTGACCACCTCTTCACCAACTCTCTCAACATAAATTCGTCATGCTTTTCTCTCAAAGAAG
JMFS132B12+           TTGACCACCTCTTCACCAACTCTCTCAACATAAATTCGTCATGCTTTTCTCTCAAAGAAG
JMFF028P06+           TTGACCACCTCTTCACCAACTCTCTCAACATAAATTCGTCATGCTTTTCTCTCAAAGAAG
                      ____________________________________________________________
consensus             TTGACCACCTCTTCACCAACTCTCTCAACATAAATTCGTCATGCTTTTCTCTCAAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D17+           GTAATACCGTTGATGTAATATATTCTTCAAAGGATTCCCTGTATTTGTCATACAATTGCT
JMFS132B12+           GTAATACCGTTGATGTAATATATTCTTCAAAGGATTCCCTGTATTTGTCATACAATTGCT
JMFF028P06+           GTAATACCGTTGATGTAATATATTCTTCAAAGGATTCCCTGTATTTGTCATACAATTGCT
                      ____________________________________________________________
consensus             GTAATACCGTTGATGTAATATATTCTTCAAAGGATTCCCTGTATTTGTCATACAATTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D17+           GAGAGTAATCATGTGGTGGTTTTNGCGTGCACATATTGTAAATTGTCGTGTATAACATCA
JMFS132B12+           GAGAGTAATCATGTGGTGGTTTTTGCGTGCACATATTGTAAATTGTCGTGTATAACATCA
JMFF028P06+           GAGAGTAATCATGTGGTGGTTTTTGCGTGCACATATTGTAAATTGTCGTGTATAACATCA
                      ____________________________________________________________
consensus             GAGAGTAATCATGTGGTGGTTTTTGCGTGCACATATTGTAAATTGTCGTGTATAACATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D17+           TATAGTCTTCAGAGCTGAACTGTGGCACCGGCAGTCCTTCCAAGATGTTTTTCAGTTTTG
JMFS132B12+           TATAGTCTTCAGAGCTGAACTGTGGCACCGGCAGTCCTTCCAAGATGTTTTTCAGTTTTG
JMFF028P06+           TATAGTCTTCAGAGCTGAACTGTGGCACCGGCAGTCCTTCCAAGATGTTTTTCAGTTTTG
                      ____________________________________________________________
consensus             TATAGTCTTCAGAGCTGAACTGTGGCACCGGCAGTCCTTCCAAGATGTTTTTCAGTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026D17+           TTATCCC                                                     
JMFS132B12+           TTATCCCTCTTTGCATAAATTCCCATCCTTGATCTAAATCAAT                 
JMFF028P06+           TTATCCCTCTTTGCATAAATTCCCATCCTTGATCTAAATCAATCGGGGTGCGCTGACCCG
                      ____________________________________________________________
consensus             TTATCCCTCTTTGCATAAATTCCCATCCTTGATCTAAATCAATCGGGGTGCGCTGACCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028P06+           TGGCCATTATGATAACTCCAACACCTTAAAACTAAACAAAATGGTATTTCTGTTCAAAAA
                      ____________________________________________________________
consensus             TGGCCATTATGATAACTCCAACACCTTAAAACTAAACAAAATGGTATTTCTGTTCAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028P06+           ACCAGACAGGAACCTTGTTCAAGAAGAGATCGGAGCTCCGACAGTCGACAGAGTCTTGAT
                      ____________________________________________________________
consensus             ACCAGACAGGAACCTTGTTCAAGAAGAGATCGGAGCTCCGACAGTCGACAGAGTCTTGAT