Contig 004568:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007J13Sequence520004568 (3)323004046 (3)ref|XP_007052078.1|2e-25RNA 2'-phosphotransferase isoform 5 [Theobroma cacao] gb|EOX96235.1| RNA 2'-phos
JMFF028F07Sequence489004568 (3)ref|XP_004229805.1|3e-05PREDICTED: tRNA 2'-phosphotransferase 1 [Solanum lycopersicum]415004046 (3)ref|XP_007052076.1|4e-27RNA 2'-phosphotransferase isoform 3 [Theobroma cacao] gb|EOX96233.1| RNA 2'-phos
JMSF001N24Sequence371004568 (3)688004046 (3)emb|CDO97696.1|3e-57unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF007J13+                             CTTAGGACAATTTTTCACCAGAAAAATTCACCTTTATAGGGG
                      ____________________________________________________________
consensus                               CTTAGGACAATTTTTCACCAGAAAAATTCACCTTTATAGGGG
 
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JMFF007J13+           CGAAAAGTTGTGGATCAACATTATTAGTGCAAAAAACTACTAATATGCTTATATACATAG
                      ____________________________________________________________
consensus             CGAAAAGTTGTGGATCAACATTATTAGTGCAAAAAACTACTAATATGCTTATATACATAG
 
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JMFF007J13+           CATGCAAAAGGTAAGAATAGAGCATACAATAATCGACCAAGAGCATCAATTTTATCTTTT
JMFF028F07+                                      AATAATCGACCAAGAGCATCAATTTTATCTTTT
                      ____________________________________________________________
consensus             CATGCAAAAGGTAAGAATAGAGCATACAATAATCGACCAAGAGCATCAATTTTATCTTTT
 
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JMFF007J13+           CCAGAGCCACCACCTCCACCTCTACCTCTCGACCTTTCCCTCTTATCCTTTGTATCCAAT
JMFF028F07+           CCAGAGCCACCACCTCCACCTCTACCTCTNGACCTTTCCCTCTTATCCTTTGTATCCAAT
                      ____________________________________________________________
consensus             CCAGAGCCACCACCTCCACCTCTACCTCTCGACCTTTCCCTCTTATCCTTTGTATCCAAT
 
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JMSF001N24+                                CTGCGATTTGAATGTGCAAAAGCAGAGAAAGAAGAAGAG
JMFF007J13+           CCTCTTCCTCTACCACC---GCTGCGATTTGAATGTGCAAAAGCAGAGAAAGAAGAAGAG
JMFF028F07+           CCTCTTCCTCTACCACCGCTGCTGCGATTTGAATGTGCAAAAGCAGAGAAAGAAGAAGAG
                      ____________________________________________________________
consensus             CCTCTTCCTCTACCACCGCTGCTGCGATTTGAATGTGCAAAAGCAGAGAAAGAAGAAGAG
 
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JMSF001N24+           GGTGAATTTTTGTATGAATCCATTGAAGTTAATGCACGAAAGCCAGATAGCAGAGAGGAT
JMFF007J13+           GGTGAATTTTTGTATGAATCCATTGAAGTTAATGCACGAAAGCCAGATAGCAGAGAGGAT
JMFF028F07+           GGTGAATTTTTGTATGAATCCATTGAAGTTAATGCACGAAAGCCAGATAGCAGAGAGGAT
                      ____________________________________________________________
consensus             GGTGAATTTTTGTATGAATCCATTGAAGTTAATGCACGAAAGCCAGATAGCAGAGAGGAT
 
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JMSF001N24+           GGTGTAGAGGAAGCGCAAGGAAATTGGGGAAGAGCAACGAGGCAGCTTCGAAGAATTCGA
JMFF007J13+           GGTGTAGAGGAAGCGCAAGGAAATTGGGGAAGAGCAACGAGGCAGCTTCGAAGAATTCGA
JMFF028F07+           GGTGTAGAGGAAGCGCAAGGAAATTGGGGAAGAGCAACGAGGCAGCTTCGAAGAATTCGA
                      ____________________________________________________________
consensus             GGTGTAGAGGAAGCGCAAGGAAATTGGGGAAGAGCAACGAGGCAGCTTCGAAGAATTCGA
 
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JMSF001N24+           AATCCAGTGTTGTTCAGTAAAGAAGCGGCCAACATAAGGGGGAAGCTGAGGATGCTGTGT
JMFF007J13+           AATCCAGTGTTGTTCAGTAAAGAAGCGGCCAACATAAGGGGGAAGCTGAGGATGCTGTGT
JMFF028F07+           AATCCAGTGTTGTTCAGTAAAGAAGCGGCCAACATAAGGGGGAA---GAGGATGCTGTGT
                      ____________________________________________________________
consensus             AATCCAGTGTTGTTCAGTAAAGAAGCGGCCAACATAAGGGGGAAGCTGAGGATGCTGTGT
 
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JMSF001N24+           TATGGCGGGTAGGGTTGGGC                                        
JMFF007J13+           TATGGCGGGTAGGGTTGGGCGGTGAGAAATTCACCGTAAAGCAATACAATAGAA      
JMFF028F07+           TATGGCGGGTAGGGTTGGGCGGTGAGAAATTCACCGTAAAGCAATACAATAGAATAAGAA
                      ____________________________________________________________
consensus             TATGGCGGGTAGGGTTGGGCGGTGAGAAATTCACCGTAAAGCAATACAATAGAATAAGAA
 
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JMFF028F07+           CCGGAATTACAGAGCTTTGCCCATCGGAGTTTTAAGGCGTTTATTTCCAGTATAGCCCTC
                      ____________________________________________________________
consensus             CCGGAATTACAGAGCTTTGCCCATCGGAGTTTTAAGGCGTTTATTTCCAGTATAGCCCTC