| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027P17 | Sequence | 533 | 004567 (5) | ref|XP_009804995.1| | 4e-41 | PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr | 424 | 008333 (6) | gb|ABK93811.1| | 3e-55 | unknown [Populus trichocarpa] |
| JMFF037H17 | Sequence | 557 | 004567 (5) | ref|XP_009804995.1| | 4e-45 | PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr | 778 | 008333 (6) | ref|XP_011073724.1| | 4e-120 | PREDICTED: 3-isopropylmalate dehydratase large subunit [Sesamum indicum] |
| JMFF044K11 | Sequence | 631 | 004567 (5) | ref|XP_009804995.1| | 7e-64 | PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr | 614 | 008333 (6) | ref|XP_008679970.1| | 1e-76 | PREDICTED: 3-isopropylmalate dehydratase large subunit-like isoform X2 [Zea may |
| JMSF021L15 | Sequence | 699 | 004567 (5) | ref|XP_009804995.1| | 2e-86 | PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr | 767 | 008333 (6) | ref|XP_010262459.1| | 9e-124 | PREDICTED: 3-isopropylmalate dehydratase large subunit [Nelumbo nucifera] |
| JMSF036H01 | Sequence | 655 | 004567 (5) | ref|XP_009804995.1| | 4e-109 | PREDICTED: 3-isopropylmalate dehydratase large subunit-like [Nicotiana sylvestr | 490 | 008333 (6) | ref|XP_010262459.1| | 1e-65 | PREDICTED: 3-isopropylmalate dehydratase large subunit [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
JMSF036H01+ GGTATGACCNTCTTG
____________________________________________________________
consensus GGTATGACCNTCTTG
. : . : . : . : . : . :
JMSF036H01+ GGCAAGTGCCACATGGCAGACACCTTTGTAGTCCGGGTTGGCCCGAAAATTTCCAAGATC
____________________________________________________________
consensus GGCAAGTGCCACATGGCAGACACCTTTGTAGTCCGGGTTGGCCCGAAAATTTCCAAGATC
. : . : . : . : . : . :
JMSF036H01+ CTTGATGTCATAAAAGTACTTAATATTTTGCTCAGTGCAGAACTCCCTCAAGATATCCAC
JMSF021L15+ TGATGTCATAAAAGTACTTAATATTTTGCTCAGTGCAGAACTCCCTCAAGATATCCAC
____________________________________________________________
consensus CTTGATGTCATAAAAGTACTTAATATTTTGCTCAGTGCAGAACTCCCTCAAGATATCCAC
. : . : . : . : . : . :
JMSF036H01+ ATTACGGTTAGCTCTTTCATCACTTGTAAATATATAGTGGTCAGGTATGATAACAACCTT
JMSF021L15+ ATTACGGTTAGCTCTTTCATCACTTGTAAATATATAGTGGTCAGGTATGATAACAACCTT
JMFF044K11+ TAAATATATAGTGGTCAGGTATGATAACAACCTT
____________________________________________________________
consensus ATTACGGTTAGCTCTTTCATCACTTGTAAATATATAGTGGTCAGGTATGATAACAACCTT
. : . : . : . : . : . :
JMSF036H01+ TTCACGATCCCAGACCTTAGCATCTTGCCCGAACTCTTTCTTGAAAATTCCAATAGAACC
JMSF021L15+ TTCACGATCCCAGACCTTAGCATCTTGCCCGAACTCTTTCTTGAAAATTCCAATAGAACC
JMFF044K11+ TTCACGATCCCAGACCTTAGCATCTTGCCCGAACTCTTTCTTGAAAATTCCAATAGAACC
JMFF037H17+ TTGAAAATTCCAATAGAACC
____________________________________________________________
consensus TTCACGATCCCAGACCTTAGCATCTTGCCCGAACTCTTTCTTGAAAATTCCAATAGAACC
. : . : . : . : . : . :
JMSF036H01+ TGGTCCACAGACATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
JMSF021L15+ TGGTCCACAGACATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
JMFF044K11+ TGGTCCACAGAGATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
JMFF037H17+ TGGTCCACAGAGATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
JMFF027P17+ CCACAGACATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
____________________________________________________________
consensus TGGTCCACAGACATCATGGGTCATCAAAACATCAACATTTACCCAGACATTATCACCAGG
. : . : . : . : . : . :
JMSF036H01+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
JMSF021L15+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
JMFF044K11+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
JMFF037H17+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
JMFF027P17+ GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
____________________________________________________________
consensus GCTCAACTGGGACTTCTGTGAAGCCTTTGCCAATATCTTCTCAGTCATGGTCATCCCAGT
. : . : . : . : . : . :
JMSF036H01+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
JMSF021L15+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
JMFF044K11+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
JMFF037H17+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
JMFF027P17+ CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
____________________________________________________________
consensus CTTCACTGAGCCAGTGGTGGCAGGGGAGCGTTCAGTTTGCTGTGGCGCCATCACAGACAC
. : . : . : . : . : . :
JMSF036H01+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
JMSF021L15+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
JMFF044K11+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
JMFF037H17+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
JMFF027P17+ AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
____________________________________________________________
consensus AATTTTCTTGCAACCGCTTTTCTTGGCCGTTTGAACTGAGATTGGACGCTGTGAAGAAAA
. : . : . : . : . : . :
JMSF036H01+ AGCAGAGAACCCCACATCTTTCT---TGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
JMSF021L15+ AGCAGAGAACCCCACATCTTTCTGCTTGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
JMFF044K11+ AGCAGAGAACCCCACATCTTTCTGCTTGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
JMFF037H17+ AGCAGAGAACCCCACATCTTTCTGCTTGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
JMFF027P17+ AGCAGAGAACCCCACATCTTTCT---TGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
____________________________________________________________
consensus AGCAGAGAACCCCACATCTTTCTGCTTGTTGATGAATGGTGAGGAGCTGGAGGCAATAGC
. : . : . : . : . : . :
JMSF036H01+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
JMSF021L15+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
JMFF044K11+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
JMFF037H17+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
JMFF027P17+ AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
____________________________________________________________
consensus AGAGGAGGCCATTGGAGATTTGGGTCTGCGCAGAGCAGAGTGGCGGAGGTAAAGGAAGGA
. : . : . : . : . : . :
JMSF036H01+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGG
JMSF021L15+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
JMFF044K11+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
JMFF037H17+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
JMFF027P17+ AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
____________________________________________________________
consensus AAGAGAAAGAGGTGTGCGCGGCACAAGGGCGTCAGTGGTGGCGTCTGATAAACACAGTAG
. : . : . : . : . : . :
JMSF021L15+ CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
JMFF044K11+ CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
JMFF037H17+ CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
JMFF027P17+ CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
____________________________________________________________
consensus CGGTCAATATTCGAACCCACGCGACTAATTTTGGCGATGAATCTGCGCCACTCAATTTCA
. : . : . : . : . : . :
JMSF021L15+ GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCAC
JMFF044K11+ GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCACGTTTTTTCTTCTTCT
JMFF037H17+ GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCACGTTTTTTCTTCTTCT
JMFF027P17+ GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCACGTTTTTTCTTCTTCTTCCTC
____________________________________________________________
consensus GGTCGACGGTGAGATCCGGGTGAAGCCGGTGTTTGTGCACGTTTTTTCTTCTTCTTCCTC