Contig 004565:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP005A07Sequence620004565 (4)gb|EMT33700.1|1e-136Tubulin beta-3 chain [Aegilops tauschii]
JMFF027D20Sequence513004565 (4)gb|AGQ43300.1|5e-96TUBB3, partial [Oryza nivara] gb|AGQ43301.1| TUBB3, partial [Oryza rufipogon] gb717004565 (4)gb|ACF83522.1|7e-110unknown [Zea mays]
JMSF041K08Sequence763004565 (4)gb|AEN19686.1|5e-152beta-tubulin [Cymbidium faberi]710019410gb|ACF83522.1|5e-98unknown [Zea mays]

Alignment

This contig is upended


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rJMFF027D20-                                                GTTTTTTGCCAATATTTACAAC
                      ____________________________________________________________
consensus                                                   GTTTTTTGCCAATATTTACAAC
 
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rJMFF027D20-          AAATCACATCGAATGACAAAAGGCATTGTAACAAACCCATCTCAAATACAGATTATACAC
                      ____________________________________________________________
consensus             AAATCACATCGAATGACAAAAGGCATTGTAACAAACCCATCTCAAATACAGATTATACAC
 
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rJMFF027D20-          ATTATATAATACATACAACAACCAATAACTTGATCTACCTGTCCCTTCAAGATGAAAACC
                      ____________________________________________________________
consensus             ATTATATAATACATACAACAACCAATAACTTGATCTACCTGTCCCTTCAAGATGAAAACC
 
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rJMFF027D20-          AAACACCCACGAGAAAACCAACATTGTACAAGTGTTGGGCAAAGTGAGCGGAAGCCGAAG
                      ____________________________________________________________
consensus             AAACACCCACGAGAAAACCAACATTGTACAAGTGTTGGGCAAAGTGAGCGGAAGCCGAAG
 
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rJMFF027D20-          ATACCTCAAGCACATACCTCCTCTTCTTCTTCTTCCTCGTACTCATCGTTATCGGCAGTT
                      ____________________________________________________________
consensus             ATACCTCAAGCACATACCTCCTCTTCTTCTTCTTCCTCGTACTCATCGTTATCGGCAGTT
 
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rJMFF027D20-          GCATCCTGGTATTGCTGGTATTCAGCAACGAGGTCATTCATGTTACTCTCGGCCTCGGTG
                      ____________________________________________________________
consensus             GCATCCTGGTATTGCTGGTATTCAGCAACGAGGTCATTCATGTTACTCTCGGCCTCGGTG
 
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rJMFF027D20-          AACTCCATCTCGTCCATCCCTTCACCAGTGTACCAGTGCAAGAAAGCTTTGCGCCTAAAC
                      ____________________________________________________________
consensus             AACTCCATCTCGTCCATCCCTTCACCAGTGTACCAGTGCAAGAAAGCTTTGCGCCTAAAC
 
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rJMFF027D20-          ATGGCTGTGAATTGCTCACTGACACGCCTGAACATCTCTTGAATTGAAGTTGAATTTCCA
                      ____________________________________________________________
consensus             ATGGCTGTGAATTGCTCACTGACACGCCTGAACATCTCTTGAATTGAAGTTGAATTTCCA
 
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rJMFF027D20-          ATAAAAGTGGATGACATCTTCAGACCCCTTGGAGGGATGTCACAAACACTGGATTTTACA
                      ____________________________________________________________
consensus             ATAAAAGTGGATGACATCTTCAGACCCCTTGGAGGGATGTCACAAACACTGGATTTTACA
 
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rJMFF027D20-          TTATTGGGAATCCACTCTACAAAGTACGAGGAGTTCTTGTTCTGAACATTAATCATTTGC
                      ____________________________________________________________
consensus             TTATTGGGAATCCACTCTACAAAGTACGAGGAGTTCTTGTTCTGAACATTAATCATTTGC
 
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rJMFF027D20-          TCGTCAACTTCTTTGGTGCTCATCTTACCACGGAACATTGCTGAGGCAGTTAGGTAGCGG
JMCP005A07+                                                           GTTAGGTAGCGG
                      ____________________________________________________________
consensus             TCGTCAACTTCTTTGGTGCTCATCTTACCACGGAACATTGCTGAGGCAGTTAGGTAGCGG
 
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rJMFF027D20-          CCATGACGAGGATCAGCAGCACACATCATGTTCTTGGCATCCCACATCTG          
JMCP005A07+           CCATGACGAGGATCAGCAGCACACATCATGTTCTTGGCATCCCACATCTGCTGGGTAAGT
                      ____________________________________________________________
consensus             CCATGACGAGGATCAGCAGCACACATCATGTTCTTGGCATCCCACATCTGCTGGGTAAGT
 
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JMCP005A07+           TCAGGGACAGTGAGGGCTCGGTATTGCTGGGAGCCTCTAGAGGTCAAGGGTGCAAATCCA
                      ____________________________________________________________
consensus             TCAGGGACAGTGAGGGCTCGGTATTGCTGGGAGCCTCTAGAGGTCAAGGGTGCAAATCCA
 
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JMCP005A07+           ACCATGAAGAAGTGCAGACGAGGGAATGGGATAAGATTAACAGCCAGTTTCCTAAGGTCA
                      ____________________________________________________________
consensus             ACCATGAAGAAGTGCAGACGAGGGAATGGGATAAGATTAACAGCCAGTTTCCTAAGGTCA
 
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JMCP005A07+           GAGTTTAGCTGTCCAGGGAACCGAAGACAGCATGTCACACCACTCATGGTTGCGGAAATC
                      ____________________________________________________________
consensus             GAGTTTAGCTGTCCAGGGAACCGAAGACAGCATGTCACACCACTCATGGTTGCGGAAATC
 
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JMCP005A07+           AGGTGGTTGAGATCACCAAAGGTAGGAGTTGAAAGCTTGAGAGTACGGAAGCAGATGTCA
JMSF041K08+              TGGTTGAGATCACCAAAGGTAGGAGTTGAAAGCTTGAGAGTACGGAAGCAGATGTCA
                      ____________________________________________________________
consensus             AGGTGGTTGAGATCACCAAAGGTAGGAGTTGAAAGCTTGAGAGTACGGAAGCAGATGTCA
 
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JMCP005A07+           TAAAGAGCCTCATTATCCAGAACCATACACTCATCTGCATTCTCTACTAGTTGATGAACA
JMSF041K08+           TAAAGAGCCTCATTATCCAGAACCATACACTCATCTGCATTCTCTACTAGTTGATGAACA
                      ____________________________________________________________
consensus             TAAAGAGCCTCATTATCCAGAACCATACACTCATCTGCATTCTCTACTAGTTGATGAACA
 
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JMCP005A07+           GAAAGGGTAGCATTATATGGCTCAACAtCTGTATCAGATACTTTCGGTcAAGGGAAGACA
JMSF041K08+           GAAAGGGTAGCATTATATGGCTCAACAACTGTATCAGATACTTTCGGTGAAGGGAAGACA
                      ____________________________________________________________
consensus             GAAAGGGTAGCATTATATGGCTCAACAACTGTATCAGATACTTTCGGTGAAGGGAAGACA
 
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JMCP005A07+           GAGAtTGTCAACATCATACGATCTGGATACTCCTCCCTGATCTTcctAtTGAGAAGGGTG
JMSF041K08+           GAGAATGTCAACATCATACGATCTGGATACTCCTCCCTGATCTTGGAAATGAGAAGGGTG
                      ____________________________________________________________
consensus             GAGAATGTCAACATCATACGATCTGGATACTCCTCCCTGATCTTGGAAATGAGAAGGGTG
 
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JMCP005A07+           CCCATACCAGATCCCGTGCCTCCAgCTAtAGAATGGCAAACTTGGAAACCTTGTATACAA
JMSF041K08+           CCCATACCAGATCCCGTGCCTCCACCTAAAGAATGGCAAACTTGGAAACCTTGTATACAA
JMFF027D20+                                                                   ACAA
                      ____________________________________________________________
consensus             CCCATACCAGATCCCGTGCCTCCACCTAAAGAATGGCAAACTTGGAAACCTTGTATACAA
 
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JMCP005A07+           TgcgtcaagagtcgaTCCTTGCGGACGACAaCGAGGAgaGAATgttTGAcgagacgGCCC
JMSF041K08+           TCGCAGTTCTCAGCTTCCTTGCGGACGACATCGAGGACTGAATCAATGAGCTCTGCGCCC
JMFF027D20+           TCGCAGTTCTCAGCTTCCTTGCGGACGACATCGAGGACTGAATCAATGAGCTCTGCGCCC
                      ____________________________________________________________
consensus             TCGCAGTTCTCAGCTTCCTTGCGGACGACATCGAGGACTGAATCAATGAGCTCTGCGCCC
 
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JMCP005A07+           TCGGT                                                       
JMSF041K08+           TCGGTGTAATGGCCCTTGGCCCAGTTGTTCCCCGCGCCAGACTGACCAAAGACGAAGTTA
JMFF027D20+           TCGGTGTAATGGCCCTTGGCCCAGTTGTTCCCCGCGCCAGACTGACCAAAGACGAAGTTA
                      ____________________________________________________________
consensus             TCGGTGTAATGGCCCTTGGCCCAGTTGTTCCCCGCGCCAGACTGACCAAAGACGAAGTTA
 
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JMSF041K08+           TCGGGGCGGAAGATCTGGCCAAAGGGGCCTGATCTGACGGAATCCATGGTACCAGGCTCG
JMFF027D20+           TCGGGGCGGAAGATCTGGCCAAAGGGGCCTGATCTGACGGAATCCATGGTACCAGGCTCG
                      ____________________________________________________________
consensus             TCGGGGCGGAAGATCTGGCCAAAGGGGCCTGATCTGACGGAATCCATGGTACCAGGCTCG
 
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JMSF041K08+           AGGTCCATGAGGACGGCACGGGGAACGTATCGGCCGCCGCTGGCCTCATTGTAGTAGACG
JMFF027D20+           AGGTCCATGAGGACGGCACGGGGAACGTATCGGCCGCCGCTGGCCTCATTGTAGTAGACG
                      ____________________________________________________________
consensus             AGGTCCATGAGGACGGCACGGGGAACGTATCGGCCGCCGCTGGCCTCATTGTAGTAGACG
 
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JMSF041K08+           TTGATGCGCTCGAGCTGGAGATCGGAGTCACCGCTGTACCTGCCGGTGTGGTCGATGCCG
JMFF027D20+           TTGATGCGCTCGAGCTGGAGATCGGAGTCACCGCTGTACCTGCCGGTGTGGTCGATGCCG
                      ____________________________________________________________
consensus             TTGATGCGCTCGAGCTGGAGATCGGAGTCACCGCTGTACCTGCCGGTGTGGTCGATGCCG
 
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JMSF041K08+           TGCTCGTCGCAAATCACCTCCCAGAACTTGGCTCCGATCTGGTTACCGCATTGACCTCCC
JMFF027D20+           TGCTCGTCGCAAATCACCTCCCAGAACTTGGCTCCGATCTGGTTACCGCATTGACCTCCC
                      ____________________________________________________________
consensus             TGCTCGTCGCAAATCACCTCCCAGAACTTGGCTCCGATCTGGTTACCGCATTGACCTCCC
 
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JMSF041K08+           TGAATGTG                                                    
JMFF027D20+           TGAATGTGAAGAATTTCTCTCATCTTACCTCGCTTTTCTCCTCAAAATCCGATCGCAACA
                      ____________________________________________________________
consensus             TGAATGTGAAGAATTTCTCTCATCTTACCTCGCTTTTCTCCTCAAAATCCGATCGCAACA
 
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JMFF027D20+           GGTCAGACGATTCTCTCTCACTCCTTTCTCTCGGTCTGCTCCCAATTCCTTCTCTCTCTT
                      ____________________________________________________________
consensus             GGTCAGACGATTCTCTCTCACTCCTTTCTCTCGGTCTGCTCCCAATTCCTTCTCTCTCTT