| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013A12 | Sequence | 716 | 004564 (6) | ref|XP_009800304.1| | 6e-68 | PREDICTED: copper transporter 5 [Nicotiana sylvestris] | |||||
| JMFF027C10 | Sequence | 547 | 004564 (6) | ref|XP_009800304.1| | 6e-51 | PREDICTED: copper transporter 5 [Nicotiana sylvestris] | 715 | 004564 (6) | ref|XP_009800304.1| | 5e-68 | PREDICTED: copper transporter 5 [Nicotiana sylvestris] |
| JMFN004J02 | Sequence | 618 | 004564 (6) | ref|XP_009800304.1| | 3e-62 | PREDICTED: copper transporter 5 [Nicotiana sylvestris] | |||||
| JMFN034I24 | Sequence | 623 | 004564 (6) | ref|XP_009800304.1| | 4e-62 | PREDICTED: copper transporter 5 [Nicotiana sylvestris] | |||||
| JMFN038B15 | Sequence | 618 | 004564 (6) | ref|XP_009800304.1| | 7e-61 | PREDICTED: copper transporter 5 [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF027C10- CATTCCGTAACGCACAATAATAATACAAGTTAGGAGTAATAGAAATTGCAATTT
rJMFF013A12- ATTCCGTAACGCACAATAATAATACAAGTTAGGAGTAATAGAAATTGCAATTT
____________________________________________________________
consensus CATTCCGTAACGCACAATAATAATACAAGTTAGGAGTAATAGAAATTGCAATTT
. : . : . : . : . : . :
rJMFF027C10- CTAGAAAAGCAAAAAAAGATAAAATAGAAAATGAAAAACAGTTTCAATCCATTCAGAATA
rJMFF013A12- CTAGAAAAGCAAAAAAAGATAAAATAGAAAATGAAAAACAGTTTCAATCCATTCAGAATA
____________________________________________________________
consensus CTAGAAAAGCAAAAAAAGATAAAATAGAAAATGAAAAACAGTTTCAATCCATTCAGAATA
. : . : . : . : . : . :
rJMFF027C10- TATATATTGTATATATACATTAATACATATGACGATAATAGATTAAGGTTGGGGATTGAG
rJMFF013A12- TATATATTGTATATATACATTAATACATATGACGATAATAGATTAAGGTTGGGGATTGAG
JMFN038B15+ ATATGATGATAATTGATTAAGGTGGGGGATTGAG
JMFN004J02+ GGGATTGAG
____________________________________________________________
consensus TATATATTGTATATATACATTAATACATATGACGATAATAGATTAAGGTTGGGGATTGAG
. : . : . : . : . : . :
rJMFF027C10- ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
rJMFF013A12- ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
JMFN038B15+ ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
JMFN004J02+ ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
JMFN034I24+ TTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
____________________________________________________________
consensus ACTGGAAAGGGTATCGAATTTCAAGCACAGGCGCAGGGATTATCCACCACCACGACGTCC
. : . : . : . : . : . :
rJMFF027C10- TCCTCGCCACCGCTCCGGAAGTGCAGGTACCCCACGGAGAGGCCCACCACGATGGCGATC
rJMFF013A12- TCCTCGCCACCGCTCCGGAAGTGCAGGTACCCCACGGAGAGGCCCACCACGATGGCGATC
JMFN038B15+ TCCTCGCCGCCGCTCCGGAAGAGCAGGTACCCCACGGAGAGGCCCACCACGACGGCGATC
JMFN004J02+ TCCTCGCCGCCGCTCCGGAAGAGCAGGTACCCCACGGAGAGGCCCACCACGACGGCGATC
JMFN034I24+ TCCTCGCCGCCGCTCCGGAAGAGCAGGTACCCCACGGAGAGGCCCACCACGACGGCGATC
JMFF027C10+ CACGATGGCGATC
____________________________________________________________
consensus TCCTCGCCGCCGCTCCGGAAGAGCAGGTACCCCACGGAGAGGCCCACCACGATGGCGATC
. : . : . : . : . : . :
rJMFF027C10- AGCACGCCGGCGTTGAACGACATGATGGCTAGCATCAGCATGTACCCGATCGCGGAGTTG
rJMFF013A12- AGCACGCCGGCGTTGAACGACATGATGGCTAGCATCAGCATGTACCCGATCGCGGAGTTG
JMFN038B15+ AGCACGCCCGCGTTGAACGACATGACGGCCAGCATCAGCATGTACCCGATCGCGGAGTTG
JMFN004J02+ AGCACGCCCGCGTTGAACGACATGACGGCCAGCATCAGCATGTACCCGATCGCGGAGTTG
JMFN034I24+ AGCACGCCCGCGTTGAACGACATGACGGCCAGCATCAGCATGTACCCGATCGCGGAGTTG
JMFF027C10+ AGCACGCCGGCGTTGAACGACATGATGGCTAGCATCAGCATGTACCCGATCGCGGAGTTG
____________________________________________________________
consensus AGCACGCCGGCGTTGAACGACATGATGGCTAGCATCAGCATGTACCCGATCGCGGAGTTG
. : . : . : . : . : . :
rJMFF027C10- ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGG-----
rJMFF013A12- ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGG-----
JMFN038B15+ ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGGTCAAG
JMFN004J02+ ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGGTCAAG
JMFN034I24+ ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGGTCAAG
JMFF027C10+ ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGG-----
____________________________________________________________
consensus ACCCCGAAAAGCACAGCCCCGGCGAACCTCGCCGCATACCGGCGGCCACCCACGG-----
. : . : . : . : . : . :
rJMFF027C10- -TCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGCGGCTCGGCTGAGACGGTGGCGGAACC
rJMFF013A12- -TCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGCGGCTCGGCTGAGACGGTGGCGGAACC
JMFN038B15+ GTCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGGGGCTTGGCTGAGACGATGGCGGAACC
JMFN004J02+ GTCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGGGGCTTGGCTGAGACGATGGCGGAACC
JMFN034I24+ GTCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGGGGCTTGGCTGAGACGATGGCGGAACC
JMFF027C10+ -TCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGCGGCTCGGCTGAGACGGTGGCGGAACC
____________________________________________________________
consensus -TCGGGAGGGAGTAAAGGAGCGGCGCGTTGATGCGGCTCGGCTGAGACGGTGGCGGAACC
. : . : . : . : . : . :
rJMFF027C10- GAGTTGGCGCCAGCGAAGCCCTTCTTGGCGCTGAGGGAGGAGATTAGCTTGAACCTCTGG
rJMFF013A12- GAGTTGGCGCCAGCGAAGCCCTTCTTGGCGCTGAGGGAGGAGATTAGCTTGAACCTCTGG
JMFN038B15+ GAGCAGGGGCCGTCGAAGCCCTTCTTGGCGCTGAGGGTGGAGATCAGCTTGAACCGCTGG
JMFN004J02+ GAGCAGGGGCCGTCGAAGCCCTTCTTGGCGCTGAGGGTGGAGATCAGCTTGAACCGCTGG
JMFN034I24+ GAGCAGGGGCCGTCGAAGCCCTTCTTGGCGCTGAGGGTGGAGATCAGCTTGAACCGCTGG
JMFF027C10+ GAGTTGGCGCCAGCGAAGCCCTTCTTGGCGCTGAGGGAGGAGATTAGCTTGAACCTCTGG
____________________________________________________________
consensus GAGTTGGCGCCAGCGAAGCCCTTCTTGGCGCTGAGGGAGGAGATTAGCTTGAACCTCTGG
. : . : . : . : . : . :
rJMFF027C10- CGGCCCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTTAGG
rJMFF013A12- CGGCCCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTTAGG
JMFN038B15+ CGGCGCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTGAGG
JMFN004J02+ CGGCGCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTGAGG
JMFN034I24+ CGGCGCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTGAGG
JMFF027C10+ CGGCCCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTTAGG
____________________________________________________________
consensus CGGCCCTCCTCCATGTACTGGTAGAAGACGGCGAAGATGAGACAGGCCAGCAAGGTTAGG
. : . : . : . : . : . :
rJMFF027C10- GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACCTTTTTGCCC
rJMFF013A12- GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACCTTTTTGCCC
JMFN038B15+ GTGTAGCTGGTCCGAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACGTTTTTGCCC
JMFN004J02+ GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACGTTTTTGCCC
JMFN034I24+ GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACGTTTTTGCCC
JMFF027C10+ GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACCTTTTTGCCC
____________________________________________________________
consensus GTGTAGCTGGTCCAAGAATCGGTTTTCCAGAAATCGAACAAAAGGGTCACCTTTTTGCCC
. : . : . : . : . : . :
rJMFF027C10- CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
rJMFF013A12- CAGTAGAANGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
JMFN038B15+ CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
JMFN004J02+ CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
JMFN034I24+ CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
JMFF027C10+ CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
____________________________________________________________
consensus CAGTAGAAGGTCATGTGCATCATCTTTGCAGATCTGATGTGCTCTGACGATTCAAGAACT
. : . : . : . : . : . :
rJMFF027C10- GAAATCG
rJMFF013A12- GAAATCGGA
JMFN038B15+ GAAATCGGAGAGAGGAGAGGGGTAACCGGTAGGTTTGGTGACCG
JMFN004J02+ GAAATCGGAGAGAGGAGAGGGGTAACCGGTAGGTTTGGTGACCGCTTGCCGCCGGGAATG
JMFN034I24+ GAAATCGGAGAGAGGAGAGGGGTAACCGGTAGGTTTGGTGACCGCTTGCCGCCGGGAATG
JMFF027C10+ GAAATCGGAGAGAGGAGAGGAGTAGCCGGTAGGTTTGGTGACCGCCGGCCGCCGGGAAAG
____________________________________________________________
consensus GAAATCGGAGAGAGGAGAGGGGTAACCGGTAGGTTTGGTGACCGCTTGCCGCCGGGAATG
. : . : . : . : . : . :
JMFN004J02+ GAAGAGAGG
JMFN034I24+ GAAGAGAGGGGGGTGGTGG
JMFF027C10+ GAAGAGAGGGGAGTGGTGGTGGTGGAGTTGAATTCTTGAAGATAAGAAAGGGGGTGCGTT
____________________________________________________________
consensus GAAGAGAGGGGGGTGGTGGTGGTGGAGTTGAATTCTTGAAGATAAGAAAGGGGGTGCGTT