Contig 004563:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026G07Sequence391004563 (12)ref|XP_009605477.1|1e-30PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009362004563 (12)ref|XP_009605477.1|1e-30PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMFN020A11Sequence607004563 (12)ref|XP_009605477.1|5e-96PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMSF009L24Sequence355004563 (12)gb|KDO61816.1|2e-48hypothetical protein CISIN_1g031480mg [Citrus sinensis]674004563 (12)ref|XP_009605477.1|7e-96PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMSF024F12Sequence661004563 (12)ref|XP_009605477.1|5e-96PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009677004563 (12)ref|XP_009605477.1|7e-96PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMSF033G17Sequence665004563 (12)ref|XP_009605477.1|6e-96PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009643004563 (12)ref|XP_009605477.1|5e-96PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMSF051I04Sequence662004563 (12)ref|XP_009605477.1|6e-96PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009673004563 (12)ref|XP_009605477.1|7e-96PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMSF052I04Sequence662004906 (11)ref|XP_009618489.1|8e-107PREDICTED: trafficking protein particle complex subunit 9 isoform X2 [Nicotiana673004563 (12)ref|XP_009605477.1|5e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009

Alignment

This contig is upended


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JMFN020A11-                                          AGCTGCCGATCCAACTCGCTCCTATCTTC
rJMSF033G17+                      GGCTGCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
JMSF051I04-                       GGCTGCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
JMSF033G17-                       GGCTGCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
rJMSF052I04+                      GGCTGCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
JMSF024F12-                         CTGCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
rJMSF009L24+                          GCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
JMSF009L24-                           GCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
rJMSF051I04+                      GGCTGCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
rJMSF024F12+                        CTGCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
                      ____________________________________________________________
consensus                         GGCTGCCTCTAGGGTTTTTAGCTGCCGATCCAACTCGCTCCTATCTTC
 
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JMFN020A11-           TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
rJMSF033G17+          TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
JMSF051I04-           TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
JMSF033G17-           TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
rJMSF052I04+          TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
JMSF024F12-           TTGCGATACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
rJMSF009L24+          TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
JMSF009L24-           TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
rJMSF051I04+          TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
rJMSF024F12+          TTGCGATACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
                      ____________________________________________________________
consensus             TTGCGACACATCGGCGGCTACAATCATGGCGGAGCAGACTGAGAAGGCTTTCTTGAAGCA
 
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JMFN020A11-           GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
rJMSF033G17+          GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
JMSF051I04-           GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
JMSF033G17-           GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
rJMSF052I04+          GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
JMSF024F12-           GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
rJMSF009L24+          GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
JMSF009L24-           GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
rJMSF051I04+          GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
rJMSF024F12+          GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
                      ____________________________________________________________
consensus             GCCGGGAGTTTTTCTCAGCTCGAAGAAAACAGGGAAGGGTAAGAGGCCCGGTAAGGGAGG
 
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JMFN020A11-           TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
rJMSF033G17+          TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
JMSF051I04-           TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
JMSF033G17-           TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
rJMSF052I04+          TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
JMSF024F12-           TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
rJMSF009L24+          TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
JMSF009L24-           TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
rJMSF051I04+          TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
rJMSF024F12+          TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
                      ____________________________________________________________
consensus             TAATCGATTCTGGAAGAGCATTGGATTAGGGTTTAAGACACCTCGCGAGGCTACTGAAGG
 
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JMFN020A11-           GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
rJMSF033G17+          GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
JMSF051I04-           GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
JMSF033G17-           GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
rJMSF052I04+          GACATATANTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
JMSF024F12-           GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
rJMSF009L24+          GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
JMSF009L24-           GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
rJMSF051I04+          GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
rJMSF024F12+          GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
                      ____________________________________________________________
consensus             GACATATATTGATAAAAAATGCCCCTTCACTGGTACTGTTTCTATCAGAGGTCGTATCCT
 
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JMFN020A11-           TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
rJMSF033G17+          TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
JMSF051I04-           TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
JMSF033G17-           TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
rJMSF052I04+          TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
JMSF024F12-           TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
rJMSF009L24+          TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
JMSF009L24-           TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
rJMSF051I04+          TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
rJMSF024F12+          TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
rJMFF026G07+                                      AATAGAACAATCATTGTTCGTAGGAACTACCT
JMFF026G07-                                       AATAGAACAATCATTGTTCGTAGGAACTACCT
                      ____________________________________________________________
consensus             TGCTGGGACATGCCATAGTGCTAAGATGAATAGAACAATCATTGTTCGTAGGAACTACCT
 
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JMFN020A11-           TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
rJMSF033G17+          TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
JMSF051I04-           TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
JMSF033G17-           TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
rJMSF052I04+          TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
JMSF024F12-           TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
rJMSF009L24+          TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
JMSF009L24-           TCACTTT                                                     
rJMSF051I04+          TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
rJMSF024F12+          TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
rJMFF026G07+          TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
JMFF026G07-           TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
                      ____________________________________________________________
consensus             TCACTTTGTGAAGAAGTACCAGAGGTATGAAAAAAGACACTCAAACATTGCTGCTCACAT
 
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JMFN020A11-           ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
rJMSF033G17+          ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
JMSF051I04-           ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
JMSF033G17-           ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
rJMSF052I04+          ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
JMSF024F12-           ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
rJMSF009L24+          ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
rJMSF051I04+          ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
rJMSF024F12+          ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
rJMFF026G07+          ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACGTTTATCATTGGCCAATGCAGGCCAT
JMFF026G07-           ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACGTTTATCATTGGCCAATGCAGGCCAT
                      ____________________________________________________________
consensus             ATCACCTTGCTTCCGTGTGAAAGAGGGAGATTACG-TTATCATTGGCCAATGCAGGCCAT
 
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JMFN020A11-           TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
rJMSF033G17+          TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
JMSF051I04-           TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
JMSF033G17-           TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
rJMSF052I04+          TGTCCAAAACTGTGAGGTTCAACGTTNTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
JMSF024F12-           TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
rJMSF009L24+          TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
rJMSF051I04+          TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
rJMSF024F12+          TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
rJMFF026G07+          TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
JMFF026G07-           TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
                      ____________________________________________________________
consensus             TGTCCAAAACTGTGAGGTTCAACGTTTTGAAGGTGATTCCTGCTGGCTCTGCTGGTGGCG
 
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JMFN020A11-           GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
rJMSF033G17+          GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
JMSF051I04-           GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
JMSF033G17-           GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
rJMSF052I04+          GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
JMSF024F12-           GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
rJMSF009L24+          GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
rJMSF051I04+          GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
rJMSF024F12+          GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
rJMFF026G07+          GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
JMFF026G07-           GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
                      ____________________________________________________________
consensus             GAAAGAAGGCGTTTACTGGCATGTGATTTTGCGGTTTTCTTGTTAACATCAAATTATTCG
 
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JMFN020A11-           AGTTATGATATTAGACTCTNTTTTGTTGAACTCATACTA                     
rJMSF033G17+          AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTATTC                  
JMSF051I04-           AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTA-TTCAGTAGCCCCATGTTTAC
JMSF033G17-           AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTA-TTCAGTAGCCCCATGTTTAC
rJMSF052I04+          AGTTATGATATTAGACTCTTTTTTGNNGAACTCATACTATTCAGTAGCCACCATGTTTAC
JMSF024F12-           AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTA-TTCAGTAGCCCCATGTTTAC
rJMSF009L24+          AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTATTTCAGTAGCCCCATGTTTAC
rJMSF051I04+          AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTA-TTCAGTAGCCCCATGTTTAC
rJMSF024F12+          AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTA-TTCAGTAGCCCCATGTTTAC
rJMFF026G07+          AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTA-TTCAGTAGCCCCATGTTTAC
JMFF026G07-           AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTA-TTCAGTAGCCCCATGTTTAC
                      ____________________________________________________________
consensus             AGTTATGATATTAGACTCTTTTTTGTTGAACTCATACTA-TTCAGTAGCCCCATGTTTAC
 
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JMSF051I04-           ATTTTTGAATGCTGAG                                            
JMSF033G17-           ATTTTTGAATGCTGAGATG                                         
rJMSF052I04+          ATTTTTGAANGCTGAGANGTAGTCGA                                  
JMSF024F12-           ATTTTTGAATGCTGA                                             
rJMSF009L24+          ATTTTTGAATGCTGAGATGTAGTCGAG                                 
rJMSF051I04+          ATTTTTGAATGCTGAGATGTAGTCGAG                                 
rJMSF024F12+          ATTTTTGAATGCTGAGATGTAGTCGAG                                 
rJMFF026G07+          ATTTTTGAATGCTGAGATGTAGTCGAG                                 
JMFF026G07-           ATTTTTGAATGCTGAGATGTAGTCGAGTTCTTGAATCACTCAGTAAGTTTANAAAAAAAA
                      ____________________________________________________________
consensus             ATTTTTGAATGCTGAGATGTAGTCGAGTTCTTGAATCACTCAGTAAGTTTANAAAAAAAA