Contig 004561:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006B12Sequence533004561 (7)ref|XP_011076924.1|1e-95PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Sesamum i772012492 (8)ref|XP_009773275.1|3e-86PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana
JMFF006D16Sequence496004561 (7)ref|XP_009773274.1|1e-54PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana773012492 (8)ref|XP_009773275.1|1e-87PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana
JMFF012I07Sequence467004561 (7)ref|XP_009773274.1|8e-59PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana741012492 (8)ref|XP_009773275.1|5e-86PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana
JMFF026B06Sequence473004561 (7)ref|XP_009773274.1|6e-61PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana751012492 (8)ref|XP_009773275.1|3e-90PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana
JMFF031P17Sequence553004561 (7)ref|XP_011076924.1|9e-102PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Sesamum i779012492 (8)ref|XP_009773275.1|4e-90PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana
JMFF051K08Sequence581004561 (7)ref|XP_009773274.1|1e-83PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana160012492 (8)
JMSF016I06Sequence523004561 (7)gb|KDO42035.1|9e-36hypothetical protein CISIN_1g0164182mg, partial [Citrus sinensis]722012492 (8)ref|XP_009773275.1|3e-82PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana

Alignment

This contig is upended


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JMFF006B12+                AGGTGGTTTAACTGTCTCGACTAGAGCCAGTCCCATATAAACAGGAACAAATATC
JMFF031P17+                   TGGTTTAACTGTCTCGACTAGAGCCAGTCCCATATAAACAGGAACAAATATC
                      ____________________________________________________________
consensus                  AGGTGGTTTAACTGTCTCGACTAGAGCCAGTCCCATATAAACAGGAACAAATATC
 
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JMFF006B12+           AAAAGGCATATTGAAACCACAAAAATGTAGTCCTCGGGAAGAAAACGTGCTAGGAGATCT
JMFF031P17+           AAAAGGCATATTGAAACCACAAAAATGTAGTCCTCGGGAAGAAAACGTGCTAGGAGATCT
JMFF051K08+                                                GAAGAAAACGTGCTAGGAGATCT
                      ____________________________________________________________
consensus             AAAAGGCATATTGAAACCACAAAAATGTAGTCCTCGGGAAGAAAACGTGCTAGGAGATCT
 
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JMFF006B12+           CCCACAACATGGGATGCAGAAAAAAAACCTGTAATCCAACTAAAAGCTGCAGCTCGGTTG
JMFF031P17+           CCCACAACATGGGATGCAGAAAAAAAACCTGTAATCCAACTAAAAGCTGCAGCTCGGTTG
JMFF051K08+           CCCACAACATGGGATGCAGAAAAAAAACCTGTAATCCAACTAAAAGCTGCAGCTCGGTTG
                      ____________________________________________________________
consensus             CCCACAACATGGGATGCAGAAAAAAAACCTGTAATCCAACTAAAAGCTGCAGCTCGGTTG
 
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JMFF006B12+           CTCTCCTCAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCTTGACTT
JMFF031P17+           CTCTCCTCAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCTTGACTT
JMFF051K08+           CTCTCCTCAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCTTGACTT
JMFF012I07+                            TGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCNTGACTT
JMFF026B06+                  CAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCNTGACTT
                      ____________________________________________________________
consensus             CTCTCCTCAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCTTGACTT
 
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JMFF006B12+           ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCTTGACTTGTTA
JMFF031P17+           ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCTTGACTTGTTA
JMFF051K08+           ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCTTGACTTGTTA
JMFF012I07+           ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCNTGACTTGTTA
JMFF026B06+           ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCNTGACTTGTTA
                      ____________________________________________________________
consensus             ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCTTGACTTGTTA
 
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JMFF006B12+           ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMFF031P17+           ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGCGACAAGAAGAAGAGGTTTT
JMFF051K08+           ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMFF012I07+           ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMFF006D16+                        TAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMSF016I06+                        TAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMFF026B06+           ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
                      ____________________________________________________________
consensus             ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
 
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JMFF006B12+           CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF031P17+           CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF051K08+           CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF012I07+           CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF006D16+           CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCNCCATCTTGAATATCCCA
JMSF016I06+           CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF026B06+           CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
                      ____________________________________________________________
consensus             CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
 
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JMFF006B12+           ACAACAGTTTGTTGAAGTCCATTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
JMFF031P17+           ACAACAGTTTGTTGAAGTCCATTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
JMFF051K08+           ACAACAGTTTGTTGAAGTCCATTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
JMFF012I07+           ACAACAGTTTGTTGAAGTCCANTGATGTAGATAGCTTCAGAGCAAGAGGANTGGCCATCA
JMFF006D16+           ACAACAGTTTGTTGAAGTCCANTGATGTAGATAGNTTCAGAGCAAGAGGNNTGGCCATCA
JMSF016I06+           ACAACAGTTTGTTGAAGTCCANTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
JMFF026B06+           ACAACAGTTTGTTGAAGTCCANTGATGTAGATAGCTTCAGAGCAAGAGGANTGGCCATCA
                      ____________________________________________________________
consensus             ACAACAGTTTGTTGAAGTCCATTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
 
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JMFF006B12+           CAGAGAGCATTGGTGGTGACATCAACCAGCACAGATTTAGTCATCTCCTCGGCAATCC  
JMFF031P17+           CAGAGAGCATTGGTGGTGACATCAACCAGCACAGATTTAGTCATCTCCTCGGCAATCCAG
JMFF051K08+           CAGAGAGCATTGGTGGTGACATCAACCAGCACAGATTTAGTCATCTCCTCGGCAATCCAG
JMFF012I07+           CAGAGAGCANTGGTGGTGACATCAACCAGCACAGATNTAGTCATCTCCTCGGCAATCCAG
JMFF006D16+           CAGAGAGCANTGGTGGNGACATCANCCAGCACAGATNTAGTCATCTCCTCGGCAATCCAG
JMSF016I06+           CAGAGAGCATTGGTGGNGACATCAACCAGCACAGANTTAGTCATCTCCTCGGCAATCCAG
JMFF026B06+           CAGAGAGCANTGGTGGTGACATCAACCAGCACAGATNTAGTCATCTCCTCGGCAATCCAG
                      ____________________________________________________________
consensus             CAGAGAGCATTGGTGGTGACATCAACCAGCACAGATTTAGTCATCTCCTCGGCAATCCAG
 
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JMFF031P17+           TGAACACATAGTGGAACCAGT                                       
JMFF051K08+           TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
JMFF012I07+           TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
JMFF006D16+           TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
JMSF016I06+           TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
JMFF026B06+           TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
                      ____________________________________________________________
consensus             TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
 
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JMFF051K08+           ATT                                                         
JMFF012I07+           ANTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTGTATTGAGCACTCAC       
JMFF006D16+           ATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTGTATTGAGCACTCAC       
JMSF016I06+           ATT                                                         
JMFF026B06+           ANTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTGTATTGAGCACTCACGAAGGAT
                      ____________________________________________________________
consensus             ATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTGTATTGAGCACTCACGAAGGAT