| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006H22 | Sequence | 514 | 004542 (10) | gb|AAL89713.1|AF483213_1 | 1e-107 | actin [Asarina barclaiana] | 106 | 001123 (4) | |||
| JMFF021J24 | Sequence | 185 | 004542 (10) | ||||||||
| JMFF021K15 | Sequence | 553 | 004542 (10) | ref|XP_011091473.1| | 2e-114 | PREDICTED: actin-11 [Sesamum indicum] ref|XP_011091474.1| PREDICTED: actin-11 [S | |||||
| JMFF026K01 | Sequence | 185 | 004542 (10) | 168 | 001123 (4) | ||||||
| JMFF038P13 | Sequence | 354 | 004542 (10) | gb|ACF75872.1| | 2e-52 | beta-actin [Pericallis cruenta] | |||||
| JMFF049C11 | Sequence | 467 | 004542 (10) | ref|XP_010485236.1| | 2e-88 | PREDICTED: actin-4-like [Camelina sativa] | 402 | 001123 (4) | gb|AAW83504.1| | 1e-06 | actin [Ipomoea batatas] |
| JMFN008B20 | Sequence | 640 | 004542 (10) | ref|XP_011091473.1| | 1e-137 | PREDICTED: actin-11 [Sesamum indicum] ref|XP_011091474.1| PREDICTED: actin-11 [S | |||||
| JMFS019C05 | Sequence | 546 | 004542 (10) | ref|XP_010485236.1| | 5e-91 | PREDICTED: actin-4-like [Camelina sativa] | |||||
| JMFS070E07 | Sequence | 626 | 004542 (10) | ref|XP_011080749.1| | 4e-86 | PREDICTED: actin-1-like [Sesamum indicum] ref|XP_011101608.1| PREDICTED: actin-1 | |||||
| JMSF007E14 | Sequence | 439 | 004542 (10) | gb|AAL89713.1|AF483213_1 | 3e-87 | actin [Asarina barclaiana] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF021K15+ A
JMFN008B20+ CCACATCTGCTGGA
____________________________________________________________
consensus CCACATCTGCTGGA
. : . : . : . : . : . :
JMFF021K15+ ATGTGCTGAGGGAGGCTAAAATCGATCCTCCGATCCAAACACTGTACTTCCTCTCGGGCG
JMFN008B20+ ATGTGCTGAGGAAGGCTAAAATCGATCCTCCGATCCAAACACTGTACTTCCTCTCGGGCG
____________________________________________________________
consensus ATGTGCTGAGGGAGGCTAAAATCGATCCTCCGATCCAAACACTGTACTTCCTCTCGGGCG
. : . : . : . : . : . :
JMFF021K15+ GGGCAACCACCTTGATCTTCATACTACTTGGAGCCAAAGCCGTGATCTCCTTGCTCATCC
JMFF006H22+ TCTTCATACTACTTGGAGCCAAAGCCGTGATCTCCTTGCTCATCC
JMSF007E14+ TCC
JMFN008B20+ GGGCAACCACCTTGATCTTCATACTACTTGGAGCCAAAGCCGTGATCTCCTTGCTCATCC
____________________________________________________________
consensus GGGCAACCACCTTGATCTTCATACTACTTGGAGCCAAAGCCGTGATCTCCTTGCTCATCC
. : . : . : . : . : . :
JMFF021K15+ TATCAGCAATGCCGGTAAACATTGTGGTACCACCACTGAGGACGATATTCCCGTACAGGT
JMFF006H22+ TATCAGCAATGCCGGTAAACATTGTGGTACCACCACTGAGGACGATATTCCCGTACAGGT
JMSF007E14+ TATCAGCAATGCCGGTAAACATTGTGGTACCACCACTGAGGACGATATTCCCGTACAGGT
JMFN008B20+ TATCAGCAATGCCGGTAAACATTGTGGTACCACCACTGAGGACGATATTCCCGTACAGGT
____________________________________________________________
consensus TATCAGCAATGCCGGTAAACATTGTGGTACCACCACTGAGGACGATATTCCCGTACAGGT
. : . : . : . : . : . :
JMFF021K15+ CCTTCCTAATATCGACGTCGCACTTCATGATGGAATTGTATGTTGTCTCGTGGATGCCAG
JMFF006H22+ CCTTCCTAATATCGACGTCGCACTTCATGATGGAATTGTATGTTGTCTCGTGGATGCCAG
JMSF007E14+ CCTTCCTAATATCGACGTCGCACTTCATGATGGAATTGTATGTTGTCTCGTGGATGCCAG
JMFF038P13+ CGACGTCGCACTTCATGATGGAATTGTATGTTGTCTCGTGGATGCCAG
JMFN008B20+ CCTTCCTAATATCGACGTCGCACTTCATGATGGAATTGTATGTTGTCTCGTGGATGCCAG
JMFS070E07+ CGACGTCGCACTTCATGATGGAATTGTATGTTGTCTCGTGGATGCCAG
____________________________________________________________
consensus CCTTCCTAATATCGACGTCGCACTTCATGATGGAATTGTATGTTGTCTCGTGGATGCCAG
. : . : . : . : . : . :
JMFF021K15+ CAGCTTCCATCCCGATTATGGATGGCTGGAAGAGGACCTCCGGGCAGCGGAATCGCTCGT
JMFF006H22+ CAGCTTCCATCCCGATTATGGATGGCTGGAAGAGGACCTCCGGGCAGCGGAATCGCTCGT
JMSF007E14+ CAGCTTCCATCCCGATTATGGATGGCTGGAAGAGGACCTCCGGGCAGCGGAATCGCTCGT
JMFF038P13+ CAGCTTCCATCCCGATTATGGATGGCTGGAAGAGGACCTCCGGGCAGCGGAATCGCTCGT
JMFN008B20+ CAGCTTCCATCCCGATTATGGATGGCTGGAAGAGGACCTCCGGGCAGCGGAATCGCTCGT
JMFS070E07+ CAGCTTCCATCCCGATTATGGATGGCTGGAAGAGGACCTCCGGGCAGCGGAATCGCTCGT
____________________________________________________________
consensus CAGCTTCCATCCCGATTATGGATGGCTGGAAGAGGACCTCCGGGCAGCGGAATCGCTCGT
. : . : . : . : . : . :
JMFF021K15+ TGCCGATAGTGATCACCTGTCCATCGGGCAGCTCGTAGCTCTTTTCCACAGATGAGCTCG
JMFF006H22+ TGCCGATAGTGATCACCTGTCCATCGGGCAGCTCGTAGCTCTTTTCCACAGATGAGCTCG
JMSF007E14+ TGCCGATAGTGATCACCTGTCCATCGGGCAGCTCGTAGCTCTTTTCCACAGATGAGCTCG
JMFF038P13+ TGCCGATAGTGATCACCTGTCCATCGGGCAGCTCGTAGCTCTTTTCCACAGATGAGCTCG
JMFN008B20+ TGCCGATAGTGATCACCTGTCCATCGGGCAGCTCGTAGCTCTTTTCCACAGATGAGCTCG
JMFS070E07+ TGCCGATAGTGATCACCTGTCCATCGGGCAGCTCGTAGCTCTTTTCCACAGATGAGCTCG
____________________________________________________________
consensus TGCCGATAGTGATCACCTGTCCATCGGGCAGCTCGTAGCTCTTTTCCACAGATGAGCTCG
. : . : . : . : . : . :
JMFF021K15+ TCTTGGATGTTTCGAGCTCTTGCTCGTAGTCGAGAGCAATGTACGAGAGCTTTTCCTTCA
JMFF006H22+ TCTTGGATGTTTCGAGCTCTTGCTCGTAGTCGAGAGCAATGTACGAGAGCTTTTCCTTCA
JMSF007E14+ TCTTGGATGTTTCGAGCTCTTGCTCGTAGTCGAGAGCAATGTACGAGAGCTTTTCCTTCA
JMFF038P13+ TCTTGGATGTTTCGAGCTCTTGCTCGTAGTCGAGAGCAATGTACGAGAGCTTTTCCTTCA
JMFN008B20+ TCTTGGATGTTTCGAGCTCTTGCTCGTAGTCGAGAGCAATGTACGAGAGCTTTTCCTTCA
JMFS070E07+ TCTTGGATGTTTCGAGCTCTTGCTCGTAGTCGAGAGCAATGTACGAGAGCTTTTCCTTCA
____________________________________________________________
consensus TCTTGGATGTTTCGAGCTCTTGCTCGTAGTCGAGAGCAATGTACGAGAGCTTTTCCTTCA
. : . : . : . : . : . :
JMFF021K15+ TGTCCCTCACGATTTCCCGCTCCGCGGAAGTGGTGAAAGAATAGCCTCTCTCGGTCAGAA
JMFF006H22+ TGTCCCTCACGATTTCCCGCTCCGCGGAAGTGGTGAAAGAATAGCCTCTCTCGGTCAGAA
JMSF007E14+ TGTCCCTCACGATTTCCCGCTCCGCGGAAGTGGTGAAAGAATAGCCTCTCTCGGTCAGAA
JMFF038P13+ TGTCCCTCACGATTTCCCGCTCCGCGGAAGTGGTGAAAGAATAGCCTCTNTCGGTCAGAA
JMFN008B20+ TGTCCCTCACGATTTCCCGCTCCGCGGAAGTGGTGAAAGAATAGCCTCTCTCGGTCAGAA
JMFS070E07+ TGTCCCTCACGATTTCCCGCTCCGCGGAAGTGGTGAAAGAATAGCCTCTCTCGGTCAGAA
____________________________________________________________
consensus TGTCCCTCACGATTTCCCGCTCCGCGGAAGTGGTGAAAGAATAGCCTCTCTCGGTCAGAA
. : . : . : . : . : . :
JMFF021K15+ TCTTCATGAGATGGTCGGTGAGATCACGTCCTGCCAAATCAAGACGCAGGATTGCGTGTG
JMFF006H22+ TCTTCATGAGATGGTCGGTGAGATCACGTCCTGCCAAATCAAGACGCAGGATTGCGTGTG
JMSF007E14+ TCTTCATGAGATGGTCGGTGAGATCACGTCCTGCCAAATCAAGACGCAGGATTGCGTGTG
JMFF038P13+ TCTTCATGAGATGGTCGGTGAGATCACGTCNTGCCAAATCAAGACGCAGGATTGNGTGTG
JMFN008B20+ TCTTCATGAGATGGTCGGTGAGATCACGTCCTGCCAAATCAAGACGCAGGATTGCGTGTG
JMFS070E07+ TCTTCATGAGATGGTCGGTGAGATCACGTCCTGCCAAATCAAGACGCAGGATTGCGTGTG
____________________________________________________________
consensus TCTTCATGAGATGGTCGGTGAGATCACGTCCTGCCAAATCAAGACGCAGGATTGCGTGTG
. : . : . : . : . : . :
JMFF021K15+ GCAGGGCGTAAC
JMFF006H22+ GCAGGGCGTAACCTTCGTAGATTGGAACCGTGTGACTCACACCATC
JMSF007E14+ GCAGGGCGTAACC
JMFF038P13+ GCAGGG
JMFN008B20+ GCAGGGCGTAACCTTCGTAGATTGGAACCGTGTGACTCACACCATCCCCAGAATCCAAAA
JMFS070E07+ GCAGGGCGTAACCTTCGTAGATTGGAACCGTGTGACTCACACCATCCCCAGAATCCAAAA
____________________________________________________________
consensus GCAGGGCGTAACCTTCGTAGATTGGAACCGTGTGACTCACACCATCCCCAGAATCCAAAA
. : . : . : . : . : . :
JMFN008B20+ CAATACCAGTTGTACGACCACTGGC
JMFS070E07+ CAATACCTAAAACCCACCAAGTTAATATCAATATTATGACAAATATTCAAATTATTCGCC
____________________________________________________________
consensus CAATACCTGTTGTCCGCCCAGTTGCTATCAATATTATGACAAATATTCAAATTATTCGCC
. : . : . : . : . : . :
JMFS070E07+ TTAATGATAATGCTTACCAGTTGTACGACCACTGGCGTAAAGGGAAAGGACGGCCTGGAT
____________________________________________________________
consensus TTAATGATAATGCTTACCAGTTGTACGACCACTGGCGTAAAGGGAAAGGACGGCCTGGAT
. : . : . : . : . : . :
JMFS070E07+ AGCAACATACATAGCAGGGGCATTGAACGTTTCGAACATGATTTGTGTCATTTTCTCACG
JMFS019C05+ GGGGCATTGAACGTTTCGAACATGATNTGTGTCATTTTCTCACG
JMFF049C11+ GAACATGATTTGTGTCATTTTCTCACG
____________________________________________________________
consensus AGCAACATACATAGCAGGGGCATTGAACGTTTCGAACATGATTTGTGTCATTTTCTCACG
. : . : . : . : . : . :
JMFS070E07+ ATTAGCCTTGGGGTTAAGAGGAGCTTCCGTGAG
JMFS019C05+ ATTAGCCTTGGGGTTAAGAGGAGCTTCCGTGAGGAGCACCGGGTGCTCCTCGGGAGCCAC
JMFF049C11+ ATTAGCCTTGGGGTTAAGAGGAGCTTCCGTGAGGAGCACCGGGTGCTCCTCGGGAGCCAC
____________________________________________________________
consensus ATTAGCCTTGGGGTTAAGAGGAGCTTCCGTGAGGAGCACCGGGTGCTCCTCGGGAGCCAC
. : . : . : . : . : . :
JMFS019C05+ ACGGAGTTCATTGTAGAAAGTATGATGCCATATTTTCTCCATGTCATCCCAGTTGTTGAC
JMFF049C11+ ACGGAGTTCATTGTAGAAAGTATGATGCCATATTTTCTCCATGTCATCCCAGTTGTTGAC
____________________________________________________________
consensus ACGGAGTTCATTGTAGAAAGTATGATGCCATATTTTCTCCATGTCATCCCAGTTGTTGAC
. : . : . : . : . : . :
JMFS019C05+ AATTCCATGTTCGATAGGGTACTTCAGAGTCAAAATACCTCTCTTCGATTGAGCCTCGTC
JMFF049C11+ AATTCCATGTTCGATAGGGTACTTCAGAGTCAAAATACCTCTCTTCGATTGAGCCTCGTC
____________________________________________________________
consensus AATTCCATGTTCGATAGGGTACTTCAGAGTCAAAATACCTCTCTTCGATTGAGCCTCGTC
. : . : . : . : . : . :
JMFS019C05+ TCCAACATAAGCATCCTTCTGGCCCATGCCAACCATCACTCCCGTGTGACGGGGGCGCCC
JMFF049C11+ TCCAACATAAGCATCCTTCTGGCCCATGCCAACCATCACTCCCGTGTGACGGGGGCGCCC
____________________________________________________________
consensus TCCAACATAAGCATCCTTCTGGCCCATGCCAACCATCACTCCCGTGTGACGGGGGCGCCC
. : . : . : . : . : . :
JMFS019C05+ AACAATGCTAGGAAACACAGCTCTCGGAGCATCATCTCCAGCAAATCCGGCCTTGACCAT
JMFF049C11+ AACAATGCTAGGAAACACAGCTCTCGGAGCATCATCTCCAGCAAATCCGGCCTTGACCAT
____________________________________________________________
consensus AACAATGCTAGGAAACACAGCTCTCGGAGCATCATCTCCAGCAAATCCGGCCTTGACCAT
. : . : . : . : . : . :
JMFS019C05+ TCCAGTTCCATTGTCACAGACGAGGGGCTGGATATCCTCACCTTCGGCCATCTT
JMFF049C11+ TCCAGTTCCATTGTCACAGACGAGGGGCTGGATATCCTCACCTTCGGCCATCTTTTTTTT
JMFF026K01+ TTTTT
JMFF021J24+ TTTTT
____________________________________________________________
consensus TCCAGTTCCATTGTCACAGACGAGGGGCTGGATATCCTCACCTTCGGCCATCTTTTTTTT
. : . : . : . : . : . :
JMFF049C11+ TTTTTATTGGTTCTTTAGGCTTTTGAAGATATGGGTATTGGGTGTGGCGTGATGTTCCTC
JMFF026K01+ TTTTTATTGGTTCTTTAGGCTTTTGAAGATATGGGTATTGGGTGTGGCGTGATGTTCCTC
JMFF021J24+ TTTTTATTGGTTCTTTAGGCTTTTGAAGATATGGGTATTGGGTGTGGCGTGATGTTCCTC
____________________________________________________________
consensus TTTTTATTGGTTCTTTAGGCTTTTGAAGATATGGGTATTGGGTGTGGCGTGATGTTCCTC
. : . : . : . : . : . :
JMFF049C11+ TCTCCCGTCTTTCGCACTCT
JMFF026K01+ TCTCCCGTCTTTCGCACTCTTAAAACAGAGCCTGACGCACTCCCTCAGGCTTAAAAGCCG
JMFF021J24+ TCTCCCGTCTTTCGCACTCTTAAAACAGAGCCTGACGCACTCCCTCAGGCTTAAAAGCCG
____________________________________________________________
consensus TCTCCCGTCTTTCGCACTCTTAAAACAGAGCCTGACGCACTCCCTCAGGCTTAAAAGCCG
. : . : . : . : . : . :
JMFF026K01+ GAATAACGAAAACTGAGTCTCAGCCTCAAATGAAATTCGGATGAAATGAGCCTCAAATTC
JMFF021J24+ GAATAACGAAAACTGAGTCTCAGCCTCAAATGAAATTCGGATGAAATGAGCCTCAAATTC
____________________________________________________________
consensus GAATAACGAAAACTGAGTCTCAGCCTCAAATGAAATTCGGATGAAATGAGCCTCAAATTC