Contig 004539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021H08Sequence583004539 (3)ref|XP_002285144.1|131PREDICTED: uncharacterized protein LOC100263969 [Vitis vinifera] emb|CBI16312.3|576004539 (3)ref|XP_002285144.1|131PREDICTED: uncharacterized protein LOC100263969 [Vitis vinifera] emb|CBI16312.3|
JMFN043B23Sequence607004539 (3)ref|XP_002285144.1|119PREDICTED: uncharacterized protein LOC100263969 [Vitis vinifera] emb|CBI16312.3|

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN043B23+ CAAGAACTGAAGACCATAGAACTCTCCATGT
                      ____________________________________________________________
consensus CAAGAACTGAAGACCATAGAACTCTCCATGT
 
. : . : . : . : . : . :
JMFN043B23+ TTTTTATTGGTACATTAATAGAATTAAGTTTCTTCAATACATGACTCCAAATAAATGTCA
rJMFF021H08- TAAGTTTCTTCAACACATGACTCCAAATAAATGTCA
JMFF021H08+ TAAGTTTCTTCAACACATGACTCCAAATAAATGTCA
                      ____________________________________________________________
consensus TTTTTATTGGTACATTAATAGAATTAAGTTTCTTCAACACATGACTCCAAATAAATGTCA
 
. : . : . : . : . : . :
JMFN043B23+ CAAAACAAGCAACCTAATAATGTGCTGCATCATTGCAGCAGAACATGGTTGCTTTCCTCT
rJMFF021H08- CAAAACAAGCAACCTAATAATGTGCTGCATCATTGCAGCAGAACATGGTTGCTTTCCTCT
JMFF021H08+ CAAAACAAGCAACCTAATAATGTGCTGCATCATTGCAGCAGAACATGGTTGCTTTCCTCT
                      ____________________________________________________________
consensus CAAAACAAGCAACCTAATAATGTGCTGCATCATTGCAGCAGAACATGGTTGCTTTCCTCT
 
. : . : . : . : . : . :
JMFN043B23+ TTCAGTCACTATGAAACAAAAGGCTACAACTCAAAGGAAGCCATTGCATGTGCAGGTGTA
rJMFF021H08- TTCAGTCACTATGAAACAAAAGGCTACAACTCAAAGGAAGCCATTGCATGTACAGGTGTA
JMFF021H08+ TTCAGTCACTATGAAACAAAAGGCTACAACTCAAAGGAAGCCATTGCATGTACAGGTGTA
                      ____________________________________________________________
consensus TTCAGTCACTATGAAACAAAAGGCTACAACTCAAAGGAAGCCATTGCATGTACAGGTGTA
 
. : . : . : . : . : . :
JMFN043B23+ TGAATTTTACAAAACGACAGTAAAAAGTTTGTGAAGCAGCTCTAGAATTGCACAATGATT
rJMFF021H08- TGAATTTTACAAAACGACAGTAAAAAGTTTGTGAAGCAGCTCTAGAATTGCACAATGATT
JMFF021H08+ TGAATTTTACAAAACGACAGTAAAAAGTTTGTGAAGCAGCTCTAGAATTGCACAATGATT
                      ____________________________________________________________
consensus TGAATTTTACAAAACGACAGTAAAAAGTTTGTGAAGCAGCTCTAGAATTGCACAATGATT
 
. : . : . : . : . : . :
JMFN043B23+ TCTACCATCCACGGGAGCTG--AGACTTGATGACAGGTCCCATAATCTGATCCACTGTTT
rJMFF021H08- TCTACCATCCACGGGAGCTGACAGACTTGATGACAGGTCCCATAATCTGATCCACTGTTT
JMFF021H08+ TCTACCATCCACGGGAGCTGACAGACTTGATGACAGGTCCCATAATCTGATCCACTGTTT
                      ____________________________________________________________
consensus TCTACCATCCACGGGAGCTGACAGACTTGATGACAGGTCCCATAATCTGATCCACTGTTT
 
. : . : . : . : . : . :
JMFN043B23+ TATTCCATAGGTGTGCAAACTCAAAGCGGCGCTCCTTTTCAAAAATAGGCTCTTTTATCT
rJMFF021H08- TATTCCATAGGTGTGCAAACTCAAAGCGGCGCTCCTTTTCAAAAATAGGCTCTTTTATCT
JMFF021H08+ TATTCCATAGGTGTGCAAACTCAAAGCGGCGCTCCTTTTCAAAAATAGGCTCTTTTATCT
                      ____________________________________________________________
consensus TATTCCATAGGTGTGCAAACTCAAAGCGGCGCTCCTTTTCAAAAATAGGCTCTTTTATCT
 
. : . : . : . : . : . :
JMFN043B23+ GAGAATGAGGAAAAAAATGAGATTGAGTATCAGAGACGGTCTTGTAAATACTCCGGCGCT
rJMFF021H08- GAGAATGAGGAAAAAAATGAGATTGAGTATCAGAGACGGTCTTGTAAATACTCCGGCGCT
JMFF021H08+ GAGAATGAGGAAAAAAATGAGATTGAGTATCAGAGACGGTCTTGTAAATACTCCGGCGCT
                      ____________________________________________________________
consensus GAGAATGAGGAAAAAAATGAGATTGAGTATCAGAGACGGTCTTGTAAATACTCCGGCGCT
 
. : . : . : . : . : . :
JMFN043B23+ GCTCAAATACCACCACCCCCGTGAGTATGCTCCCTAATGCTGCTCCCAGCAAACGCTCCT
rJMFF021H08- GCTCAAATACCACCACCCCCGTGAGTATGCTCCCTAATGCTGCTCCCAGCAAACGCTCCT
JMFF021H08+ GCTCAAATACCACCACCCCCGTGAGTATGCTCCCTAATGCTGCTCCCAGCAAACGCTCCT
                      ____________________________________________________________
consensus GCTCAAATACCACCACCCCCGTGAGTATGCTCCCTAATGCTGCTCCCAGCAAACGCTCCT
 
. : . : . : . : . : . :
JMFN043B23+ GAGTGAGAATACTGATCATGGCGAAGTTTTTTGAATGGATCTTCAGGTTAGGGCGTACAG
rJMFF021H08- GAGTGAGAATACTGATCATGGCGAAGTTTTTTGAATGGATCTTCAGGTTAGGGCGTACAG
JMFF021H08+ GAGTGAGAATACTGATCATGGCGAAGTTTTTTGAATGGATCTTCAGGTTAGGGCGTACAG
                      ____________________________________________________________
consensus GAGTGAGAATACTGATCATGGCGAAGTTTTTTGAATGGATCTTCAGGTTAGGGCGTACAG
 
. : . : . : . : . : . :
JMFN043B23+ TTTGAGTGGCTTTCCGGCGACCTCTATGAAGATCGAAA
rJMFF021H08- TTTGAGTGGCTTTCCGGCGACCTCTATGAAGATCGAAACTTCTGGCCTCCGTTCAACTTT
JMFF021H08+ TTTGAGTGGCTTTCCGGCGACCTCTATGAAGATCGAAACTTCTGGCCTCCGTTCAACTTT
                      ____________________________________________________________
consensus TTTGAGTGGCTTTCCGGCGACCTCTATGAAGATCGAAACTTCTGGCCTCCGTTCAACTTT