Contig 004537:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021A09Sequence558004537 (3)emb|CDP01249.1|1e-42unnamed protein product [Coffea canephora]738023342ref|XP_011069759.1|1e-111PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 [Sesamum indicum]
JMFF051H09Sequence573004537 (3)ref|XP_011069759.1|2e-41PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 [Sesamum indicum]
JMSF027G06Sequence586004537 (3)ref|XP_011069759.1|2e-41PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 [Sesamum indicum]

Alignment

This contig is upended


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JMFF051H09+                                                           CTTCTCCTTCTC
JMSF027G06+                                              CCTTCTCCTTCTCCTTCTCCTTCTC
                      ____________________________________________________________
consensus                                                CCTTCTCCTTCTCCTTCTCCTTCTC
 
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JMFF051H09+           TTCTCCTTTCTCCTTCTCCTTCTCCTTATCCTTCTCCTTCTCCATCTTCTCTCTATCACG
JMSF027G06+           TTTCTCCTTCTCCTTCTCCTTCTCCTTATCCTTCTCCTTCTCCATCTTCTCTCTATCACG
                      ____________________________________________________________
consensus             TTTTTCTTTCTCCTTCTCCTTCTCCTTATCCTTCTCCTTCTCCATCTTCTCTCTATCACG
 
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JMFF051H09+           TTCTCGATCTTTATCCCTTTGCTTCTTTTCCTTCTCCCTTTCTCTCACAGGTTCTCGTTC
JMSF027G06+           TTCTCGATCTTTATCCCTTTGCTTCTTTTCCTTCTCCCTTTCTCTCACAGGTTCTCGTTC
JMFF021A09+                                                     TCTCACAGGTTCTCGTTC
                      ____________________________________________________________
consensus             TTCTCGATCTTTATCCCTTTGCTTCTTTTCCTTCTCCCTTTCTCTCACAGGTTCTCGTTC
 
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JMFF051H09+           ATGATGGTCATTTTCACTATTACCTTTATCCTTTCCCCGGGATTTACTCTTATGGAGATT
JMSF027G06+           ATGATGGTCATTTTCACTATTACCTTTATCCTTTCCCCGGGATTTACTCTTATGGAGATT
JMFF021A09+           ATGATGGTCATTTTCACTATTACCTTTATCCTTTCCCCGGGATTTACTCTTATGGAGATT
                      ____________________________________________________________
consensus             ATGATGGTCATTTTCACTATTACCTTTATCCTTTCCCCGGGATTTACTCTTATGGAGATT
 
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JMFF051H09+           TTCCTTTTTCTCTTTAATGATCCTTTGAAGTTCATTTACATCCTTGGTAATCAGGTCCAA
JMSF027G06+           TTCCTTTTTCTCTTTAATGATCCTTTGAAGTTCATTTACATCCTTGGTAATCAGGTCCAA
JMFF021A09+           TTCCTTTTTCTCTTTAATGATCCTTTGAAGTTCATTTACATCCTTGGTAATCAGGTCCAA
                      ____________________________________________________________
consensus             TTCCTTTTTCTCTTTAATGATCCTTTGAAGTTCATTTACATCCTTGGTAATCAGGTCCAA
 
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JMFF051H09+           AGGTTGTAGAAACTGAAAATCTTCATCCAGGTCTGCATCATCATTATTCAAATTTGCTTC
JMSF027G06+           AGGTTGTAGAAACTGAAAATCTTCATCCAGGTCTGCATCATCATTATTCAAATTTGCTTC
JMFF021A09+           AGGTTGTAGAAACTGAAAATCTTCATCCAGGTCTGCATCATCATTATTCAAATTTGCTTC
                      ____________________________________________________________
consensus             AGGTTGTAGAAACTGAAAATCTTCATCCAGGTCTGCATCATCATTATTCAAATTTGCTTC
 
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JMFF051H09+           CAATTCAAGGTACTGAATTCCTTTTTGCACAAATTTAACAAGAGCACCAGGAGGAACCAA
JMSF027G06+           CAATTCAAGGTACTGAATTCCTTTTTGCACAAATTTAACAAGAGCACCAGGAGGAACCAA
JMFF021A09+           CAATTCAAGGTACTGAATTCCTTTTTGCACAAATTTAACAAGAGCACCAGGAGGAACCAA
                      ____________________________________________________________
consensus             CAATTCAAGGTACTGAATTCCTTTTTGCACAAATTTAACAAGAGCACCAGGAGGAACCAA
 
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JMFF051H09+           ATTTCCATCTATAGTGCTTTTATGTATCCCTGCCTCATATCCTAGGGCAAAAGCAGTATG
JMSF027G06+           ATTTCCATCTATAGTGCTTTTATGTATCCCTGCCTCATATCCTAGGGCAAAAGCAGTATG
JMFF021A09+           ATTTCCATCTATAGTGCTTTTATGTATCCCTGCCTCATATCCTAGGGCAAAAGCAGTATG
                      ____________________________________________________________
consensus             ATTTCCATCTATAGTGCTTTTATGTATCCCTGCCTCATATCCTAGGGCAAAAGCAGTATG
 
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JMFF051H09+           AGTAAAACCGGATTCGTGAAGGTAGCGGAAAATGAGGTAGTTCAGGTCCTCGGACGTTAT
JMSF027G06+           AGTAAAACCGGATTCGTGAAGGTAGCGGAAAATGAGGTAGTTCAGGTCCTCGGACGTTAT
JMFF021A09+           AGTAAAACCGGATTCGTGAAGGTAGCGGAAAATGAGGTAGTTCAGGTCCTCGGACGTTAT
                      ____________________________________________________________
consensus             AGTAAAACCGGATTCGTGAAGGTAGCGGAAAATGAGGTAGTTCAGGTCCTCGGACGTTAT
 
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JMFF051H09+           AGAGAGCATCCTCGCGAATCGCCACCGGCGACGGCGAATGTATATGGGTGATAAGGTGTG
JMSF027G06+           AGAGAGCATCCTCGCGAATCGCCACCGGCGACGGCGAATGTATATGGGTGATAAGGTGTG
JMFF021A09+           AGAGAGCATCCTCGCGAATCGCCACCGGCGACGGCGAATGTATATGGGTGATAAGGTGTG
                      ____________________________________________________________
consensus             AGAGAGCATCCTCGCGAATCGCCACCGGCGACGGCGAATGTATATGGGTGATAAGGTGTG
 
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JMFF051H09+           TGCGAGCAGCTAGAAA                                            
JMSF027G06+           TGCGAGCAGCTAGAAACCGC                                        
JMFF021A09+           TGCGAGCAGCTAGAAACCGCAGAGATTTTAGAAGAGAGAAGAGGATTGAAGCGCTACATA
                      ____________________________________________________________
consensus             TGCGAGCAGCTAGAAACCGCAGAGATTTTAGAAGAGAGAAGAGGATTGAAGCGCTACATA
 
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JMFF021A09+           AATATCGCATCGGTACGGAGCTTCATCGCCGTCGACAGATTTGGAGGGAGGAGATGAAAT
                      ____________________________________________________________
consensus             AATATCGCATCGGTACGGAGCTTCATCGCCGTCGACAGATTTGGAGGGAGGAGATGAAAT