| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002A18 | Sequence | 514 | 004535 (4) | ref|XP_009783127.1| | 9e-60 | PREDICTED: uncharacterized protein LOC104231771 isoform X2 [Nicotiana sylvestri | 756 | 001020 (4) | ref|XP_009612138.1| | 1e-88 | PREDICTED: uncharacterized protein LOC104105510 isoform X2 [Nicotiana tomentosi |
| JMFF013I14 | Sequence | 110 | 004535 (4) | 711 | 001020 (4) | ref|XP_009612130.1| | 3e-86 | PREDICTED: uncharacterized protein LOC104105510 isoform X1 [Nicotiana tomentosi | |||
| JMFF020N12 | Sequence | 541 | 004535 (4) | ref|XP_009783127.1| | 3e-67 | PREDICTED: uncharacterized protein LOC104231771 isoform X2 [Nicotiana sylvestri | 756 | 001020 (4) | ref|XP_009612138.1| | 2e-95 | PREDICTED: uncharacterized protein LOC104105510 isoform X2 [Nicotiana tomentosi |
| JMFF032M12 | Sequence | 527 | 004535 (4) | ref|XP_009783127.1| | 5e-68 | PREDICTED: uncharacterized protein LOC104231771 isoform X2 [Nicotiana sylvestri | 793 | 001020 (4) | ref|XP_009612130.1| | 3e-98 | PREDICTED: uncharacterized protein LOC104105510 isoform X1 [Nicotiana tomentosi |
This contig is upended
. : . : . : . : . : . :
JMFF032M12+ CACTGG
JMFF020N12+ G
____________________________________________________________
consensus CACTGG
. : . : . : . : . : . :
JMFF032M12+ CAATTGCAGAGCAGAATACACTTGACCATGTCTTCAAACAATATCGGCGACCTGAATACT
JMFF002A18+ CATGTCTTCAAACAATATCGGCGACCTGAATACT
JMFF020N12+ CAATTGCAGAGCAGAATACACTTGACCATGTCTTCAAACAATATCGGCGACCTGAATACT
____________________________________________________________
consensus CAATTGCAGAGCAGAATACACTTGACCATGTCTTCAAACAATATCGGCGACCTGAATACT
. : . : . : . : . : . :
JMFF032M12+ CTCCCAAATCCTCTCTCCTTTGCTTCCCCATACATCTCTTGAAACTCTCTTACCATTTTC
JMFF002A18+ CTCCCAAATCCTCTCTCCTTTGCTTCCCCATACATCTCTTGAAACTCTCTTACCATTTTC
JMFF020N12+ CTCCCAAATCCTCTCTCCTTTGCTTCCCCATACATCTCTTGAAACTCTCTTACCATTTTC
____________________________________________________________
consensus CTCCCAAATCCTCTCTCCTTTGCTTCCCCATACATCTCTTGAAACTCTCTTACCATTTTC
. : . : . : . : . : . :
JMFF032M12+ TCCTCTTCCTCTGATAATCTCAACATTCTTCTAACTTGAGCCATCAATGACTGGTGTTGT
JMFF002A18+ TCCTCTTCCTCTGATAATCTCAACATTCTTCTAACTTGAGCCATCAATGACTGGTGTTGT
JMFF020N12+ TCCTCTTCCTCTGATAATCTCAACATTCTTCTAACTTGAGCCATCAATGACTGGTGTTGT
____________________________________________________________
consensus TCCTCTTCCTCTGATAATCTCAACATTCTTCTAACTTGAGCCATCAATGACTGGTGTTGT
. : . : . : . : . : . :
JMFF032M12+ TGAGCAGAGAGACAATCAGTGCCGAAGACGTGGAGCCTGAGAGACTGAGGGGAGTCGGAG
JMFF002A18+ TGAGCAGAGAGACAATCAGTGCCGAAGACGTGGAGCCTGAGAGACTGAGGGGAGTCGGAG
JMFF020N12+ TGAGCAGAGAGACAATCAGTGCCGAAGACGTGGAGCCTGAGAGACTGAGGGGAGTCGGAG
____________________________________________________________
consensus TGAGCAGAGAGACAATCAGTGCCGAAGACGTGGAGCCTGAGAGACTGAGGGGAGTCGGAG
. : . : . : . : . : . :
JMFF032M12+ GGGTGAGAGACTCTGACGGTGACGGAAATTTCGTGATCAGCGCAATGGTGGTCGTCGGAG
JMFF002A18+ GGGTGAGAGACTCTGACGGTGACGGAAATTTCGTGATCAGCGCAATGGTGGTCGTCGGAG
JMFF020N12+ GGGTGAGAGACTCTGACGGTGACGGAAATTTCGTGATCAGCGCAATGGTGGTCGTCGGAG
____________________________________________________________
consensus GGGTGAGAGACTCTGACGGTGACGGAAATTTCGTGATCAGCGCAATGGTGGTCGTCGGAG
. : . : . : . : . : . :
JMFF032M12+ AGGCGTAGCGGGCGTTCTAGGGTTTTTGTGAGTGGGTCCCAGTGGTTAGGTGCCATCATG
JMFF002A18+ AGGCGTAGCGGGCGTTCTAGGGTTTTTGTGAGTGGGTCCCAGTGGTTAGGTGCCATCATG
JMFF020N12+ AGGCGTAGCGGGCGTTCTAGGGTTTTTGTGAGTGGGTCCCAGTGGTTAGGTGCCATCATG
____________________________________________________________
consensus AGGCGTAGCGGGCGTTCTAGGGTTTTTGTGAGTGGGTCCCAGTGGTTAGGTGCCATCATG
. : . : . : . : . : . :
JMFF032M12+ AACAGCCCGTGGCTGCACACTGCTTTCTCTAAGTTGAATGTGGAGGAAGCGTCGCCGAGC
JMFF002A18+ AACAGCCCGTGGCTGCACACTGCTTTCTCTAAGTTGAATGTGGAGGAAGCGTCGCCGAGC
JMFF020N12+ AACAGCCCGTGGCTGCACACTGCTTTCTCTAAGTTGAATGTGGAGGAAGCGTCGCCGAGC
____________________________________________________________
consensus AACAGCCCGTGGCTGCACACTGCTTTCTCTAAGTTGAATGTGGAGGAAGCGTCGCCGAGC
. : . : . : . : . : . :
JMFF032M12+ GGCAGCTCCACCACCACCATGCCGCGGCGGGCGTCGCCGGAAATGGTAGTCTCTCCGGTG
JMFF002A18+ GGCAGCTCCACCACCACCATGCCGCGGCGGGCGTCGCCGGAAATGGTAGTCTCTCCGGTG
JMFF013I14+ CCACCACCATGCCGCGGCGGGCGTCGCCGGAAATGGTAGTCTCTCCGGTG
JMFF020N12+ GGCAGCTCCACCACCACCATGCCGCGGCGGGCGTCGCCGGAAATGGTAGTCTCTCCGGTG
____________________________________________________________
consensus GGCAGCTCCACCACCACCATGCCGCGGCGGGCGTCGCCGGAAATGGTAGTCTCTCCGGTG
. : . : . : . : . : . :
JMFF032M12+ TGCTGCATTTTGGGAGAGAGAACCGTTGGAATGAAACCGGC
JMFF002A18+ TGCTGCATTTTGGGAGAGAGAACCGTTGGAATGAAACCGGCAAACTCATTCGGTTCAGAG
JMFF013I14+ TGCTGCATTTTGGGAGAGAGAACCGTTGGAATGAAACCGGCAAACTCATTCGGTTCAGAG
JMFF020N12+ TGCTGCATTTTGGGAGAGAGAACCGTTGGAATGAAACCGGCAAACTCATTCGGTTCAGAG
____________________________________________________________
consensus TGCTGCATTTTGGGAGAGAGAACCGTTGGAATGAAACCGGCAAACTCATTCGGTTCAGAG