| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008M12 | Sequence | 602 | 004532 (5) | gb|KJB16216.1| | 4e-47 | hypothetical protein B456_002G218100 [Gossypium raimondii] gb|KJB16219.1| hypoth | 705 | 001048 (2) | ref|XP_009598595.1| | 2e-62 | PREDICTED: shaggy-related protein kinase kappa [Nicotiana tomentosiformis] |
| JMFF010F06 | Sequence | 534 | 004532 (5) | gb|KJB16216.1| | 3e-28 | hypothetical protein B456_002G218100 [Gossypium raimondii] gb|KJB16219.1| hypoth | 729 | 021240 | gb|KJB16220.1| | 8e-31 | hypothetical protein B456_002G218100 [Gossypium raimondii] |
| JMFF018E21 | Sequence | 586 | 004532 (5) | emb|CDO97626.1| | 6e-25 | unnamed protein product [Coffea canephora] | 727 | 001048 (2) | ref|XP_009598595.1| | 6e-88 | PREDICTED: shaggy-related protein kinase kappa [Nicotiana tomentosiformis] |
| JMSF005O09 | Sequence | 233 | 004532 (5) | ||||||||
| JMSF034K03 | Sequence | 646 | 004532 (5) | ref|XP_007041206.1| | 8e-54 | Shaggy-like protein kinase 41 isoform 3 [Theobroma cacao] gb|EOX97037.1| Shaggy- | 726 | 022591 | ref|XP_011047893.1| | 1e-09 | PREDICTED: shaggy-related protein kinase kappa [Populus euphratica] ref|XP_01104 |
This contig is upended
. : . : . : . : . : . :
JMFF008M12+ CAACACCAAAAGATCCTG
JMSF034K03+ CTCTACATTTTGCTTGGAAAACAACACCAAAAGATCCTG
____________________________________________________________
consensus CTCTACATTTTGCTTGGAAAACAACACCAAAAGATCCTG
. : . : . : . : . : . :
JMFF010F06+ TCTGCTATATAGCTTACATTCTGCTTGGGTTGACCATTCCGACCAC
JMFF008M12+ TTCCCACCACATGTTCTGCTATATAGCTTACATTCTGCTTGGGTTGACCATTCCGACCAC
JMSF034K03+ TTCCCACCACATGTTCTGCTATATAGCTTACATTCTGCTTGGGTTGACCATTCCGACCAC
____________________________________________________________
consensus TTCCCACCACATGTTCTGCTATATAGCTTACATTCTGCTTGGGTTGACCATTCCGACCAC
. : . : . : . : . : . :
JMFF010F06+ CAATGGTTGTTCTAATTACATGTCCTGTTTCTGCACCCACACCATCGATTATGTCTGGTT
JMFF008M12+ CAATGGTTGTTCTAATTACATGTCCTGTTTCTGCACCCACACCATCGATTATGTNTGGTT
JMSF034K03+ CAATGGTTGTTCTAATTACATGTCCTGTTTCTGCACCCACACCATCGATTATGTCTGGTT
JMFF018E21+ ATTACATGTCCTGTTTCTGCACCCACACCATCGATTATGTNTGGTT
____________________________________________________________
consensus CAATGGTTGTTCTAATTACATGTCCTGTTTCTGCACCCACACCATCGATTATGTCTGGTT
. : . : . : . : . : . :
JMFF010F06+ CACTCTCTCTGCCATCATCAATGTCCACTCTGTCCCTCAACCTCATCTCAAGCATTTCTC
JMFF008M12+ CACTCTCTCTGCCATCATCAATGTCCACTCTGTCCCTCAACCTCATCTCAAGCATTTCTC
JMSF034K03+ CACTCTCTCTGCCATCATCAATGTCCACTCTGTCCCTCAACCTCATCTCAAGCATTTCTC
JMFF018E21+ CACTCTCTCTGCCATCATCAATGTNCACTCTGTCCCTCAACCTCATCTCAAGCATTTCTC
____________________________________________________________
consensus CACTCTCTCTGCCATCATCAATGTCCACTCTGTCCCTCAACCTCATCTCAAGCATTTCTC
. : . : . : . : . : . :
JMFF010F06+ TA-CCAGCCAATCAACTGAACTAGATGAACTTGTGAAGCCATTAGCACTTCTGGAACTCC
JMFF008M12+ TACCCAGCCAATCAACTGAACTAGATGAACTTGTGAAGCCATTAGCACTTCTGGAACTCC
JMSF034K03+ TACCCAGCCAATCAACTGAACTAGATGAACTTGTGAAGCCATTAGCACTTCTGGAACTCC
JMFF018E21+ TACCCAGCCAATCAACTGAACTAGATGAACTTGTGAAGCCATTAGCACTTCTGGAACTCC
____________________________________________________________
consensus TACCCAGCCAATCAACTGAACTAGATGAACTTGTGAAGCCATTAGCACTTCTGGAACTCC
. : . : . : . : . : . :
JMFF010F06+ CTGCTCCTCCATGACCTAAGCCGGTAGACGCCATAGACGAGACTGACAAGTTTCACGGAC
JMFF008M12+ CTGCTCCTCCATGACCTAAGCCGGTAGACGCCATAGACGAGACTGACAAGTTTCACGGAC
JMSF034K03+ CTGCTCCTCCATGACCTAAGCCGGTAGACGCCATAGACGAGACTGACAAGTTTCACGGAC
JMFF018E21+ CTGCTCCTCCATGACCTAAGCCGGTAGACGCCATAGACGAGACTGACAAGTTTCACGGAC
____________________________________________________________
consensus CTGCTCCTCCATGACCTAAGCCGGTAGACGCCATAGACGAGACTGACAAGTTTCACGGAC
. : . : . : . : . : . :
JMFF010F06+ TCTAAGACATACTTGCCTCCACATAACCCTTGCTGGCATTAACTTCCATCTCAAACAAAA
JMFF008M12+ TCTAAGACATACTTGCCTCCACATAATCCTTGCTGGCATTAACTTCCATCTCAAACAAAA
JMSF034K03+ TCTAAGACATACTTGCCTCCACATAATCCTTGCTGGCATTAACTTCCATCTCAAACAAAA
JMFF018E21+ TCTAAGACATACTTGCCTCCACATAATCCTTGCTGGCATTAACTTCCATCTCAAACAAAA
____________________________________________________________
consensus TCTAAGACATACTTGCCTCCACATAATCCTTGCTGGCATTAACTTCCATCTCAAACAAAA
. : . : . : . : . : . :
JMFF010F06+ CACCTAT----CTCGTTGAACCGCGCTGGGAAATNGAAGCAGCACTCGCGCATTTCGATC
JMFF008M12+ CACCTAT----CTCGTTGAACCGCGCTGGGAAATCGAAGCAGCACTCGCGCATTTCGATC
JMSF034K03+ CACCTATCTACCTCGTTGAACCGCGCTGGGAAATCGAAGCAGCACTCGCGCATTTCGATC
JMFF018E21+ CACCTATNTACCTCGTTGAACCGCGCTGGGAAATNGAAGCAGCACTCGCGCATTTCGATC
____________________________________________________________
consensus CACCTATCTACCTCGTTGAACCGCGCTGGGAAATCGAAGCAGCACTCGCGCATTTCGATC
. : . : . : . : . : . :
JMFF010F06+ AAATGTCACCTT
JMFF008M12+ AAATGTCACCTT
JMSF034K03+ AAATGTCACCTTCCAAAAAACAAAATAAAGCAAAAACACTACCAAATTTGGGAAGAATTA
JMFF018E21+ AAATGTCACCTTCCAAAAAACAAAATAAAGCAAAAACACTACCAAATTTGGGAAGAATTA
____________________________________________________________
consensus AAATGTCACCTTCCAAAAAACAAAATAAAGCAAAAACACTACCAAATTTGGGAAGAATTA
. : . : . : . : . : . :
JMSF034K03+ TTTTGAAATGGAAACAAAAATCTACCTTATTTTCCGTTTTCTTTTAGGGTTATGCTTTTG
JMSF005O09+ ACCTTATTTTCCGTTTTCTTTTAGGGTTATGCTTTTG
JMFF018E21+ TTTTGAAATGGAAACAAAAATCTACCTTATTTTCCGTTTTCTTTTAGGGTTATGCTTTTG
____________________________________________________________
consensus TTTTGAAATGGAAACAAAAATCTACCTTATTTTCCGTTTTCTTTTAGGGTTATGCTTTTG
. : . : . : . : . : . :
JMSF034K03+ AGTTTTGACAGTGCAGTGCGAAGAGAAGAGCGAAGGAAGAGAGAGAAATAGTGTGTGTGT
JMSF005O09+ AGTTTTGACAGTGCAGTGCGAAGAGAAGAGCGAAGGAAGAGAGAGAAATAGTGTGTGTGT
JMFF018E21+ AGTTTTGACAGTGCAGTGCGAAGAGAAGAGCGAAGGAAGAGAGAGAAATAGTGTGTGTGT
____________________________________________________________
consensus AGTTTTGACAGTGCAGTGCGAAGAGAAGAGCGAAGGAAGAGAGAGAAATAGTGTGTGTGT
. : . : . : . : . : . :
JMSF034K03+ GTGTG
JMSF005O09+ GTGTG
JMFF018E21+ GTGTGTGTGTGTGTTTGGAGCTTTTCAATACTTTCACACCGACTGACAGTCTTCACTGAT
____________________________________________________________
consensus GTGTGTGTGTGTGTTTGGAGCTTTTCAATACTTTCACACCGACTGACAGTCTTCACTGAT