| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011M19 | Sequence | 466 | 004530 (4) | ref|XP_009595011.1| | 1e-44 | PREDICTED: eukaryotic translation initiation factor 3 subunit L {ECO:0000255|HA | 745 | 004199 (6) | gb|KJB54835.1| | 4e-80 | hypothetical protein B456_009G051100 [Gossypium raimondii] |
| JMFF018B01 | Sequence | 567 | 004530 (4) | ref|XP_009595011.1| | 4e-71 | PREDICTED: eukaryotic translation initiation factor 3 subunit L {ECO:0000255|HA | 705 | 004199 (6) | gb|KJB54835.1| | 2e-104 | hypothetical protein B456_009G051100 [Gossypium raimondii] |
| JMSF009E04 | Sequence | 384 | 004530 (4) | ref|XP_009595011.1| | 3e-63 | PREDICTED: eukaryotic translation initiation factor 3 subunit L {ECO:0000255|HA | 818 | 004199 (6) | emb|CDP16167.1| | 2e-128 | unnamed protein product [Coffea canephora] |
| JMSF027M06 | Sequence | 626 | 004530 (4) | ref|XP_009595011.1| | 2e-96 | PREDICTED: eukaryotic translation initiation factor 3 subunit L {ECO:0000255|HA | 754 | 004199 (6) | emb|CDP16167.1| | 1e-123 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF027M06+ T
____________________________________________________________
consensus T
. : . : . : . : . : . :
JMSF027M06+ GGCACGGTATTGGCAGAATGACTGAAATTGGTAAACAAATTCGTCAATCATATCCCACAA
____________________________________________________________
consensus GGCACGGTATTGGCAGAATGACTGAAATTGGTAAACAAATTCGTCAATCATATCCCACAA
. : . : . : . : . : . :
JMSF027M06+ CCACTGGTTTGGCAATTGCATGTTTACCACCCCATGTAGAACCACCTGGAATAAGTTGCA
JMFF018B01+ CCATGTAGAACCACCTGGAATAAGTTGCA
____________________________________________________________
consensus CCACTGGTTTGGCAATTGCATGTTTACCACCCCATGTAGAACCACCTGGAATAAGTTGCA
. : . : . : . : . : . :
JMSF009E04+ CCACGAATCAATACGCTGCTTGAGAGTCGGGGAGAGGCGAGCATAGAGGTG
JMSF027M06+ GTAATTGTCCCACGAATCAATACGCTGCTTGAGAGTCGGGGAGAGGCGAGCATAGAGGTG
JMFF018B01+ GTAATTGTCCCACGAATCAATACGCTGCTTGAGAGTCGGGGAGAGGCGAGCATAGAGGTG
____________________________________________________________
consensus GTAATTGTCCCACGAATCAATACGCTGCTTGAGAGTCGGGGAGAGGCGAGCATAGAGGTG
. : . : . : . : . : . :
JMSF009E04+ GCGAAACCACATCTCCCGGTAAAGCAAGCAGAAGACATGGTCGTTGTCGACGTAAGGTGC
JMSF027M06+ GCGAAACCACATCTCCCGGTAAAGCAAGCAGAAGACATGGTCGTTGTCGACGTAAGGTGC
JMFF011M19+ CTCCCGGTAAAGCAAGCAGAAGACATGGTCGTTGTCGACGTAAGGTGC
JMFF018B01+ GCGAAACCACATCTCCCGGTAAAGCAAGCAGAAGACATGGTCGTTGTCGACGTAAGGTGC
____________________________________________________________
consensus GCGAAACCACATCTCCCGGTAAAGCAAGCAGAAGACATGGTCGTTGTCGACGTAAGGTGC
. : . : . : . : . : . :
JMSF009E04+ GACTGCGTCAACAGAAGGCCAGGGAGTGTCCTTGAACATGCGCTCGCTGAGGCTCTGGAA
JMSF027M06+ GACTGCGTCAACAGAAGGCCAGGGAGTGTCCTTGAACATGCGCTCGCTGAGGCTCTGGAA
JMFF011M19+ GACTGCGTCAACAGAAGGCCAGGGAGTGTCCTTGAACATGCGCTCGCTGAGGCTCTGGAA
JMFF018B01+ GACTGCGTCAACAGAAGGCCAGGGAGTGTCCTTGAACATGCGCTCGCTGAGGCTCTGGAA
____________________________________________________________
consensus GACTGCGTCAACAGAAGGCCAGGGAGTGTCCTTGAACATGCGCTCGCTGAGGCTCTGGAA
. : . : . : . : . : . :
JMSF009E04+ CGAAGTCTCGTACATCTGGTGGATCTCGTACACATTCTTCTCCCTAATGTGCCTGTAAAG
JMSF027M06+ CGAAGTCTCGTACATCTGGTGGATCTCGTACACATTCTTCTCCCTAATGTGCCTGTAAAG
JMFF011M19+ CGAAGTCTCGTACATCTGGTGGATCTCGTACACATTCTTCTCCCTAATGTGCCTGTAAAG
JMFF018B01+ CGAAGTCTCGTACATCTGGTGGATCTCGTACACATTCTTCTCCCTAATGTGCCTGTAAAG
____________________________________________________________
consensus CGAAGTCTCGTACATCTGGTGGATCTCGTACACATTCTTCTCCCTAATGTGCCTGTAAAG
. : . : . : . : . : . :
JMSF009E04+ ATGGCCGACGAACGACTTCACCGGGTCTGGGACGTAGTTCGGGTCATACGACTCGAGTGA
JMSF027M06+ ATGGCCGACGAACGACTTCACCGGGTCTGGGACGTAGTTCGGGTCATACGACTCGAGTGA
JMFF011M19+ ATGGCCGACGAACGACTTCACCGGGTCTGGGACGTAGTTCGGGTCATACGACTCGAGTGA
JMFF018B01+ ATGGCCGACGAACGACTTCACCGGGTCTGGGACGTAGTTCGGGTCATACGACTCGAGTGA
____________________________________________________________
consensus ATGGCCGACGAACGACTTCACCGGGTCTGGGACGTAGTTCGGGTCATACGACTCGAGTGA
. : . : . : . : . : . :
JMSF009E04+ AGAGTCCGAGTGCTGCTGTTTGGTCGAGTAGCTGCCATCTTCGTAGTCGTATGAAGTCGC
JMSF027M06+ AGAGTCCGAGTGCTGCTGTTTGGTCGAGTAGCTGCCATCTTCGTAGTCGTATGAAGTCGC
JMFF011M19+ AGAGTCCGAGTGCTGCTGTTTGGTCGAGTAGCTGCCATCTTCGTAGTCGTATGAAGTCGC
JMFF018B01+ AGAGTCCGAGTGCTGCTGTTTGGTCGAGTAGCTGCCATCTTCGTAGTCGTATGAAGTCGC
____________________________________________________________
consensus AGAGTCCGAGTGCTGCTGTTTGGTCGAGTAGCTGCCATCTTCGTAGTCGTATGAAGTCGC
. : . : . : . : . : . :
JMSF009E04+ CATTGTTGACGTCTGATTCGCA
JMSF027M06+ CATTGTTGACGTCTGATTCGCAGAGAGGCTCCTGTTTTTGCTTTCTCCGAGACAAGGGTT
JMFF011M19+ CATTGTTGACGTCTGATTCGCACAGGATTTCC--TTTTTGCTTTCTCCGAGACAAGGGTT
JMFF018B01+ CATTGTTGACGTCTGATTCGCACAGGATTTCC--TTTTTGCTTTCTCCGAGACAAGGGTT
____________________________________________________________
consensus CATTGTTGACGTCTGATTCGCACAGGATTTCC--TTTTTGCTTTCTCCGAGACAAGGGTT
. : . : . : . : . : . :
JMSF027M06+ TATCTATAAAGACGTTGAGGTCTGATTCGCACAGGATTTCCTTTTCTCCCTGCGAGACTA
JMFF011M19+ TATCTATAAAGACGTTGAGGTCTGATTCGCACAGGATTTCCTTTTCTCCCTGCGAGACTA
JMFF018B01+ TATCTATAAAGACGTTGAGGTCTGATTCGCACAGGATTTCCTTTTCTCCCTGCGAGACTA
____________________________________________________________
consensus TATCTATAAAGACGTTGAGGTCTGATTCGCACAGGATTTCCTTTTCTCCCTGCGAGACTA
. : . : . : . : . : . :
JMSF027M06+ GGGTTTACCGAGGAAGACGATAAT
JMFF011M19+ GGGTTTACCGAGGAAGACGATAATGAAGCAAAGGCCGGGAATATTGGGTGACTTTGCCC
JMFF018B01+ GGGTTTACCGAGGAAGACGATAATGAAGCAAAGGCCGGGAATATTGGGTGACTTTGCCCT
____________________________________________________________
consensus GGGTTTACCGAGGAAGACGATAATGAAGCAAAGGCCGGGAATATTGGGTGACTTTGCCCT