Contig 004529:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017G18Sequence584004529 (5)ref|XP_006845995.1|5e-92hypothetical protein AMTR_s00155p00051130 [Amborella trichopoda] gb|ERN07670.1| 743011269 (5)gb|KDO75234.1|2e-140hypothetical protein CISIN_1g015465mg [Citrus sinensis]
JMFF027L02Sequence553004529 (5)ref|XP_006845995.1|5e-85hypothetical protein AMTR_s00155p00051130 [Amborella trichopoda] gb|ERN07670.1| 717011269 (5)gb|KDO75234.1|1e-134hypothetical protein CISIN_1g015465mg [Citrus sinensis]
JMSF011C12Sequence279004529 (5)gb|AAF65513.1|2e-20GTP-binding protein [Capsicum annuum]806011269 (5)gb|KDO75234.1|1e-121hypothetical protein CISIN_1g015465mg [Citrus sinensis]
JMSF011D18Sequence353004529 (5)ref|XP_004231561.1|2e-38PREDICTED: obg-like ATPase 1 [Solanum lycopersicum]767011269 (5)gb|KDO75234.1|4e-118hypothetical protein CISIN_1g015465mg [Citrus sinensis]
JMSF051I08Sequence621004529 (5)ref|XP_004231561.1|6e-108PREDICTED: obg-like ATPase 1 [Solanum lycopersicum]693011269 (5)gb|KDO75234.1|3e-110hypothetical protein CISIN_1g015465mg [Citrus sinensis]

Alignment

This contig is upended


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JMSF051I08+                    TCTCCATGAACTCAATATCCTTAAGCCTCAATTCCTCACTAATAACCTCCA
                      ____________________________________________________________
consensus                      TCTCCATGAACTCAATATCCTTAAGCCTCAATTCCTCACTAATAACCTCCA
 
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JMSF051I08+           AATCTCTCACAGGATCTACAGTATCATCAACATGTATAATATCTGAATCTTCAAAGGCAC
JMFF027L02+                                                          TCTTCAAAGGCAC
JMFF017G18+                           TACAGTATCATCAACATGTATAATATCTGAATCTTCAAAGGCAC
                      ____________________________________________________________
consensus             AATCTCTCACAGGATCTACAGTATCATCAACATGTATAATATCTGAATCTTCAAAGGCAC
 
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JMSF051I08+           GTAAGACATGGAAAATGCCATCAACTGCACGGATATGAGATAAGAAACTATTCCCCAGTC
JMFF027L02+           GTAAGACATGGAAAATGCCATCAACTGCACGGATATGAGATAAGAAACTATTCCCCAGTC
JMFF017G18+           GTAAGACATGGAAAATGCCATCAACTGCACGGATATGAGATAAGAAACTATTCCCCAGTC
                      ____________________________________________________________
consensus             GTAAGACATGGAAAATGCCATCAACTGCACGGATATGAGATAAGAAACTATTCCCCAGTC
 
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JMSF051I08+           CTTGTCCTTCATGAGCACCTCTAACAAGTCCAGCTATATCATGAATTTCTAGGAAAGCTG
JMFF027L02+           CTTGTCCTTCATGAGCACCTCTAACAAGTCCAGCTATATCATGAATTTCTAGGAAAGCTG
JMFF017G18+           CTTGTCCTTCATGAGCACCTCTAACAAGTCCAGCTATATCATGAATTTCTAGGAAAGCTG
                      ____________________________________________________________
consensus             CTTGTCCTTCATGAGCACCTCTAACAAGTCCAGCTATATCATGAATTTCTAGGAAAGCTG
 
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JMSF051I08+           ACACCTCACTCTTTGGCTTGTACAGTTGGCACAGCCATTCAAATCTCTCATCTGGTACAT
JMFF027L02+           ACACCTCACTCTTTGGCTTGTACAGTTGGCACAGCCATTCAAATCTCTCATCTGGTACAT
JMSF011D18+                                                              CTGGTACAT
JMFF017G18+           ACACCTCACTCTTTGGCTTGTACAGTTGGCACAGCCATTCAAATCTCTCATCTGGTACAT
                      ____________________________________________________________
consensus             ACACCTCACTCTTTGGCTTGTACAGTTGGCACAGCCATTCAAATCTCTCATCTGGTACAT
 
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JMSF051I08+           TCACTCGAGCCTCATTGGGCTCAATAGTGCAAAACGGGAAGTTCTCTGCGGGAATTGACA
JMFF027L02+           TCACTCGAGCCTCATTGGGCTCAATAGTGCAAAACGGGAAGTTCTCTGCGGGAATTGACA
JMSF011D18+           TCACTCGAGCCTCATTGGGCTCAATAGTGCAAAACGGGAAGTTCTCTGCGGGAATTGACA
JMFF017G18+           TCACTCGAGCCTCATTGGGCTCAATAGTGCAAAACGGGAAGTTCTCTGCGGGAATTGACA
                      ____________________________________________________________
consensus             TCACTCGAGCCTCATTGGGCTCAATAGTGCAAAACGGGAAGTTCTCTGCGGGAATTGACA
 
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JMSF051I08+           ACTTCGTAAGCGTGTTAAAAAGTGTGGACTTTCCCACATTTGGTAATCCAACGATTCCAA
JMFF027L02+           ACTTCGTAAGCGTGTTAAAAAGTGTGGACTTTCCCACATTTGGTAATCCAACGATTCCAA
JMSF011C12+                GTAAGCGTGTTAAAAAGTGTGGACTTTCCCACATTTGGTAATCCAACGATTCCAA
JMSF011D18+           ACTTCGTAAGCGTGTTAAAAAGTGTGGACTTTCCCACATTTGGTAATCCAACGATTCCAA
JMFF017G18+           ACTTCGTAAGCGTGTTAAAAAGTGTGGACTTTCCCACATTTGGTAATCCAACGATTCCAA
                      ____________________________________________________________
consensus             ACTTCGTAAGCGTGTTAAAAAGTGTGGACTTTCCCACATTTGGTAATCCAACGATTCCAA
 
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JMSF051I08+           TTTTGAGGTGAGACGAGAAACGGCCGAGAATGGGCCGTTCAGCCGGAACTTCTTTGCCTT
JMFF027L02+           TTTTGAGGTGAGACGAGAAACGGCCGAGAATGGGCCGTTCAGCCGGAACTTCTTTGCCTT
JMSF011C12+           TTTTGAGGTGAGACGAGAAACGGCCGAGAATGGGCCGTTCAGCCGGAACTTCTTTGCCTT
JMSF011D18+           TTTTGAGGTGAGACGAGAAACGGCCGAGAATGGGCCGTTCAGCCGGAACTTCTTTGCCTT
JMFF017G18+           TTTTGAGGTGAGACGAGAAACGGCCGAGAATGGGCCGTTCAGCCGGAACTTCTTTGCCTT
                      ____________________________________________________________
consensus             TTTTGAGGTGAGACGAGAAACGGCCGAGAATGGGCCGTTCAGCCGGAACTTCTTTGCCTT
 
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JMSF051I08+           TAGCAGCTTTTGGAGGCATCTCTTTTGCAGCTGAGAAGATCAGAAGACAAAGCGAAGAAC
JMFF027L02+           TAGCAGCTTTTGGAGGCATCTCTTTTGCAGCTGAGAAGATCAGAAGACAAAGCGAAGAAC
JMSF011C12+           TAGCAGCTTTTGGAGGCATCTCTTTTGCAGCTGAGAAGATCAGAAGACAAAGCGAAGAAC
JMSF011D18+           TAGCAGCTTTTGGAGGCATCTCTTTTGCAGCTGAGAAGATCAGAAGACAAAGCGAAGAAC
JMFF017G18+           TAGCAGCTTTTGGAGGCATCTCTTTTGCAGCTGAGAAGATCAGAAGACAAAGCGAAGAAC
                      ____________________________________________________________
consensus             TAGCAGCTTTTGGAGGCATCTCTTTTGCAGCTGAGAAGATCAGAAGACAAAGCGAAGAAC
 
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JMSF051I08+           TTCAAGCTTCCTGATAGATGTAGGAGCTTTAGGGTTTAGCGATTGTAGTATAGTACTGCA
JMFF027L02+           TTCAAGCTTCCTGATAGATGTAGGAGCTTTAGGGTTTAGCGATTGTAGTATAGTACTGCA
JMSF011C12+           TTCAAGCTTCCTGATAGATGTAGGAGCTTTAGGGTTTAGCGATTGTAGTATAGTACTGCA
JMSF011D18+           TTCAAGCTTCCTGATAGATGTAGGAGCTTTAGGGTTTAGCGATTGTAGTATAGTACTGCA
JMFF017G18+           TTCAAGCTTCCTGATAGATGTAGGAGCTTTAGGGTTTAGCGATTGTAGTATAGTACTGCA
                      ____________________________________________________________
consensus             TTCAAGCTTCCTGATAGATGTAGGAGCTTTAGGGTTTAGCGATTGTAGTATAGTACTGCA
 
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JMSF051I08+           GATACGCAGCTCCTCAGCGATGGCGGCGT                               
JMFF027L02+           GATACGCAGCTCCTCAGCGATGGCGGCGTGGTGGAGCTGTGCCACTGAAATTGGTAATCC
JMSF011C12+           GATACGCAGCTCCTCAGCGATGGCGGCGTGGTGGAGCTGTGC                  
JMSF011D18+           GATACGCAGCTCCTCAGCGATGGCGGCGTGGTGGAGCTGTGC                  
JMFF017G18+           GATACGCAGCTCCTCAGCGATGGCGGCGTGGTGGAGCTGTGCCACTGAAATTGGTAATCC
                      ____________________________________________________________
consensus             GATACGCAGCTCCTCAGCGATGGCGGCGTGGTGGAGCTGTGCCACTGAAATTGGTAATCC