Contig 004528:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017G01Sequence578004528 (3)ref|XP_006351308.1|2e-48PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]694002875 (4)ref|XP_006350258.1|1e-36PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]
JMSF002H13Sequence408004528 (3)ref|XP_006351308.1|1e-36PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]736002875 (4)ref|XP_006350258.1|9e-40PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]
JMSF027D02Sequence632004528 (3)ref|XP_006351308.1|3e-60PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]720002875 (4)ref|XP_009758658.1|6e-33PREDICTED: F-box/LRR-repeat protein At5g63520-like, partial [Nicotiana sylvestr

Alignment

This contig is upended


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JMSF027D02+             TTCCCCGATTATTCCACAATAAAGGGATCAAATTGGCTTTCAATCCCGGCAAGAAACC
                      ____________________________________________________________
consensus               TTCCCCGATTATTCCACAATAAAGGGATCAAATTGGCTTTCAATCCCGGCAAGAAACC
 
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JMSF027D02+           AACACTCAACAAGACTCCTACATTTGCATTCGGCAACATATTAACATCCTCAACGTNGTC
JMFF017G01+                                 TTTGCATTCGGCAACATATTAACATCCTCAACGTTGTC
                      ____________________________________________________________
consensus             AACACTCAACAAGACTCCTACATTTGCATTCGGCAACATATTAACATCCTCAACGTTGTC
 
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JMSF027D02+           GCCATCATCATCATCAACTATGTCCCATTGAACCTCTTGAAACTCATGAGTTAGTGCATC
JMFF017G01+           GCCATCATCATCATCAACTATGTCCCATTGAACCTCTTGAAACTCATGAGTTAGTGCATC
                      ____________________________________________________________
consensus             GCCATCATCATCATCAACTATGTCCCATTGAACCTCTTGAAACTCATGAGTTAGTGCATC
 
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JMSF027D02+           TCTACCAATAATTCCTTGTGATGTGCAAGTAATTACTGGAATTCTGGAGTCCAATCTCCT
JMFF017G01+           TCTACCAATAATTCCTTGTGATGTGCAAGTAATTACTGGAATTCTGGAGTCCAATCTCCT
                      ____________________________________________________________
consensus             TCTACCAATAATTCCTTGTGATGTGCAAGTAATTACTGGAATTCTGGAGTCCAATCTCCT
 
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JMSF027D02+           AGAAATGAGTGCATGAGCGTCTTCCAAGCTAAAACTGGGGCCAACGGAAGCAATGGCGAA
JMSF002H13+             AAATGAGTGCATGAGCGTCTTCCAAGCTAAAACTGGGGCCAACGGAAGCAATGGCGAA
JMFF017G01+           AGAAATGAGTGCATGAGCGTCTTCCAAGCTAAAACTGGGGCCAACGGAAGCAATGGCGAA
                      ____________________________________________________________
consensus             AGAAATGAGTGCATGAGCGTCTTCCAAGCTAAAACTGGGGCCAACGGAAGCAATGGCGAA
 
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JMSF027D02+           CTGAGGTCGAATCGGCTGTGATAGAACCTCGTCAATTACCTCATTTACAGCATCCTGAAG
JMSF002H13+           CTGAGGTCGAATCGGCTGTGATAGAACCTCGTCAATTACCTCATTTACAGCATCCTGAAG
JMFF017G01+           CTGAGGTCGAATCGGCTGTGATAGAACCTCGTCAATTACCTCATTTACAGCATCCTGAAG
                      ____________________________________________________________
consensus             CTGAGGTCGAATCGGCTGTGATAGAACCTCGTCAATTACCTCATTTACAGCATCCTGAAG
 
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JMSF027D02+           GGAAGGGTTGCGAGAGAGAGCGGAGGAGAACTTGGGGTAGGAGAGGATGCGGGTGGCGAT
JMSF002H13+           GGAAGGGTTGCGAGAGAGAGCGGAGGAGAACTTGGGGTAGGAGAGGATGCGGGTGGCGAT
JMFF017G01+           GGAAGGGTTGCGAGAGAGAGCGGAGGAGAACTTGGGGTAGGAGAGGATGCGGGTGGCGAT
                      ____________________________________________________________
consensus             GGAAGGGTTGCGAGAGAGAGCGGAGGAGAACTTGGGGTAGGAGAGGATGCGGGTGGCGAT
 
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JMSF027D02+           AAGGTTCCAAGAGCGGCAAACGCAGGCGACGGTGGCGCAAAACGGCGCCGGGAGGCGGGA
JMSF002H13+           AAGGTTCCAAGAGCGGCAAACGCAGGCGACGGTGGCGCAAAACGGCGCCGGGAGGCGGGA
JMFF017G01+           AAGGTTCCAAGAGCGGCAAACGCAGGCGACGGTGGCGCAAAACGGCGCCGGGAGGCGGGA
                      ____________________________________________________________
consensus             AAGGTTCCAAGAGCGGCAAACGCAGGCGACGGTGGCGCAAAACGGCGCCGGGAGGCGGGA
 
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JMSF027D02+           GAAGATGTTGTGAAGAAGATCGTCGCCGATCGAGTCGATGGTGGCGGCTTCTCGGTGCAT
JMSF002H13+           GAAGATGTTGTGAAGAAGATCGTCGCCGATCGAGTCGATGGTGGCGGCTTCTCGGTGCAT
JMFF017G01+           GAAGATGTTGTGAAGAAGATCGTCGCCGATCGAGTCGATGGTGGCGGCTTCTCGGTGCAT
                      ____________________________________________________________
consensus             GAAGATGTTGTGAAGAAGATCGTCGCCGATCGAGTCGATGGTGGCGGCTTCTCGGTGCAT
 
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JMSF027D02+           CTGTCTGTGTATGAGTGAAGGATCCTCCATTTCCAAGGCGGCGTTGAGTGTATCACTCCA
JMSF002H13+           CTGTCTGTGTATGAGTGAAGGATCCTCCATTTCCAAGGCGGCGTTGAGTGTATCACTCCA
JMFF017G01+           CTGTCTGTGTATGAGTGAAGGATCCTCCATTTCCAAGGCGGCGTTGAGTGTATCACTCCA
                      ____________________________________________________________
consensus             CTGTCTGTGTATGAGTGAAGGATCCTCCATTTCCAAGGCGGCGTTGAGTGTATCACTCCA
 
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JMSF027D02+           CCTCTACGTCTAGGGACTAGGGGCCGGGTCACT                           
JMSF002H13+           CCTCTACGTCTAGGGACTAGGGGCCGGGTCACTACTCTCCT                   
JMFF017G01+           CCTCTACGTCTAGGGACTAGGGGCCGGGTCACTACTCTCCTGGCGGCGGAAATGGAGAAC
                      ____________________________________________________________
consensus             CCTCTACGTCTAGGGACTAGGGGCCGGGTCACTACTCTCCTGGCGGCGGAAATGGAGAAC