Contig 004524:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002D03Sequence574004524 (3)ref|XP_002298520.1|3e-54leucine-rich repeat transmembrane protein kinase [Populus trichocarpa] gb|EEE833745012211 (3)ref|XP_006357131.1|4e-90PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]
JMFF016K13Sequence645004524 (3)ref|XP_010091928.1|8e-57putative inactive receptor kinase [Morus notabilis] gb|EXB47708.1| putative inac777012211 (3)ref|XP_006357131.1|3e-95PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]
JMSF007D24Sequence411004524 (3)emb|CDP02178.1|1e-24unnamed protein product [Coffea canephora]756012211 (3)ref|XP_006357131.1|8e-96PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF002D03+ TTCCAGTCAATTTGTTATC
JMFF016K13+ CAAACTAGCAATCTGAGATGGAATGTTTCCAGTCAATTTGTTATC
                      ____________________________________________________________
consensus CAAACTAGCAATCTGAGATGGAATGTTTCCAGTCAATTTGTTATC
 
. : . : . : . : . : . :
JMFF002D03+ GTTAAGTATCAACTTATTCAAATACGTGCAATTGCCGAGATCCGGGGGGATTGGCCCGGT
JMFF016K13+ GTTAAGTATCAACTTATTCAAATACGTGCAATTGCCGAGATCCGGGGGGATTGGCCCGGT
                      ____________________________________________________________
consensus GTTAAGTATCAACTTATTCAAATACGTGCAATTGCCGAGATCCGGGGGGATTGGCCCGGT
 
. : . : . : . : . : . :
JMFF002D03+ CAAATCGTTGCTGGACAAGTCTAGGGTTACTAAATAAGGCAACCAACGACAAATTTGAGA
JMFF016K13+ CAAATCGTTGCTGGACAAGTCTAGGGTTACTAAATAAGGCAACCAACGACAAATTTGAGA
                      ____________________________________________________________
consensus CAAATCGTTGCTGGACAAGTCTAGGGTTACTAAATAAGGCAACCAACGACAAATTTGAGA
 
. : . : . : . : . : . :
JMFF002D03+ AGGTATGGTACCGGAGAGTCCATTACCGGAGAGATCGAGGTTCTGCAAGCTGTGACAGTC
JMSF007D24+ CCGGAGAGATCGAGGTTNTGCAAGCTGTGACAGTC
JMFF016K13+ AGGTATGGTACCGGAGAGTCCATTACCGGAGAGATCGAGGTTCTGCAAGCTGTGACAGTC
                      ____________________________________________________________
consensus AGGTATGGTACCGGAGAGTCCATTACCGGAGAGATCGAGGTTCTGCAAGCTGTGACAGTC
 
. : . : . : . : . : . :
JMFF002D03+ CTGCAAGGCGCCGGGAACCTCGCCGCCGAGGTTCAACTCCCGGAGCTCCAACCCGATCAC
JMSF007D24+ CTGCAAGGCGCCGGGAACCTCGCCGCCGAGGTTCAACTCCCGGAGCTCCAACCCGATCAC
JMFF016K13+ CTGCAAGGCGCCGGGAACCTCGCCGCCGAGGTTCAACTCCCGGAGCTCCAACCCGATCAC
                      ____________________________________________________________
consensus CTGCAAGGCGCCGGGAACCTCGCCGCCGAGGTTCAACTCCCGGAGCTCCAACCCGATCAC
 
. : . : . : . : . : . :
JMFF002D03+ GCGATTCTCGTTGTCGTTCCAGCACGCCACGCCGACGAACTTGCAGATGAACCCGGCCGT
JMSF007D24+ GCGATTCTCGTTGTCGTTCCAGCACGCCACGCCGACGAACTTGCAGATGAACCCGGCCGT
JMFF016K13+ GCGATTCTCGTTGTCGTTCCAGCACGCCACGCCGACGAACTTGCAGATGAACCCGGCCGT
                      ____________________________________________________________
consensus GCGATTCTCGTTGTCGTTCCAGCACGCCACGCCGACGAACTTGCAGATGAACCCGGCCGT
 
. : . : . : . : . : . :
JMFF002D03+ CGTGTTGTCAAAGTTCCACAGCCCCAGGTTGCCGTCCGGATCCCTAAACGACCCCTTCAC
JMSF007D24+ CGTGTTGTCAAAGTTCCACAGCCCCAGGTTGCCGTCCGGATCCCTAAACGACCCCTTCAC
JMFF016K13+ CGTGTTGTCAAAGTTCCACAGCCCCAGGTTGCCGTCCGGATCCCTAAACGACCCCTTCAC
                      ____________________________________________________________
consensus CGTGTTGTCAAAGTTCCACAGCCCCAGGTTGCCGTCCGGATCCCTAAACGACCCCTTCAC
 
. : . : . : . : . : . :
JMFF002D03+ ACCTTGCAAACACTTGACGTCATCTTCAGCCACCCCAACTCCGAACAGCACCAGAAGAAT
JMSF007D24+ ACCTTGCAAACACTTGACGTCATCTTCAGCCACCCCAACTCCGAACAGCACCAGAAGAAT
JMFF016K13+ ACCTTGCAAACACTTGACGTCATCTTCAGCCACCCCAACTCCGAACAGCACCAGAAGAAT
                      ____________________________________________________________
consensus ACCTTGCAAACACTTGACGTCATCTTCAGCCACCCCAACTCCGAACAGCACCAGAAGAAT
 
. : . : . : . : . : . :
JMFF002D03+ CGAAAGCTTCAAAAAACGGGAAAACCCAAACCCAACCATCCTAAAATCCGCTCAGTTCTA
JMSF007D24+ CGAAAGCTTCAAAAAACGGGAAAACCCAAACCCAACCATCCTAAAATCCGCTCAGTTCTA
JMFF016K13+ CGAAAGCTTCAAAAAACGGGAAAACCCAAACCCAACCATCCTAAAATCCGCTCAGTTCTA
                      ____________________________________________________________
consensus CGAAAGCTTCAAAAAACGGGAAAACCCAAACCCAACCATCCTAAAATCCGCTCAGTTCTA
 
. : . : . : . : . : . :
JMFF002D03+ CAGCTTCAGAGCTCTTCTTCGACTGGTCCAGATGAGATGAGAAGTTTGGTATGCAGCGTT
JMSF007D24+ CAGCTTCAGAGCTCTTCTTCGACTGGTCCAGATGAGATGAGAAGTTTGGTATGCAGCGTT
JMFF016K13+ CAGCTTCAGAGCTCTTCTTCGACTGGTCCAGATGAGATGAGAAGTTTGGTATGCAGCGTT
                      ____________________________________________________________
consensus CAGCTTCAGAGCTCTTCTTCGACTGGTCCAGATGAGATGAGAAGTTTGGTATGCAGCGTT
 
. : . : . : . : . : . :
JMFF002D03+ GAACTGTAGAGGC
JMSF007D24+ GAACTGTAGAGGC
JMFF016K13+ GAACTGTAGAGGCATGGACTTTCAAAGCCGAAAGCTATTCCCCATTTGTTTTGTAATTCT
                      ____________________________________________________________
consensus GAACTGTAGAGGCATGGACTTTCAAAGCCGAAAGCTATTCCCCATTTGTTTTGTAATTCT