Contig 004524:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002D03Sequence574004524 (3)ref|XP_002298520.1|3e-54leucine-rich repeat transmembrane protein kinase [Populus trichocarpa] gb|EEE833745012211 (3)ref|XP_006357131.1|4e-90PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]
JMFF016K13Sequence645004524 (3)ref|XP_010091928.1|8e-57putative inactive receptor kinase [Morus notabilis] gb|EXB47708.1| putative inac777012211 (3)ref|XP_006357131.1|3e-95PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]
JMSF007D24Sequence411004524 (3)emb|CDP02178.1|1e-24unnamed protein product [Coffea canephora]756012211 (3)ref|XP_006357131.1|8e-96PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+                                                    TTCCAGTCAATTTGTTATC
JMFF016K13+                          CAAACTAGCAATCTGAGATGGAATGTTTCCAGTCAATTTGTTATC
                      ____________________________________________________________
consensus                            CAAACTAGCAATCTGAGATGGAATGTTTCCAGTCAATTTGTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           GTTAAGTATCAACTTATTCAAATACGTGCAATTGCCGAGATCCGGGGGGATTGGCCCGGT
JMFF016K13+           GTTAAGTATCAACTTATTCAAATACGTGCAATTGCCGAGATCCGGGGGGATTGGCCCGGT
                      ____________________________________________________________
consensus             GTTAAGTATCAACTTATTCAAATACGTGCAATTGCCGAGATCCGGGGGGATTGGCCCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           CAAATCGTTGCTGGACAAGTCTAGGGTTACTAAATAAGGCAACCAACGACAAATTTGAGA
JMFF016K13+           CAAATCGTTGCTGGACAAGTCTAGGGTTACTAAATAAGGCAACCAACGACAAATTTGAGA
                      ____________________________________________________________
consensus             CAAATCGTTGCTGGACAAGTCTAGGGTTACTAAATAAGGCAACCAACGACAAATTTGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           AGGTATGGTACCGGAGAGTCCATTACCGGAGAGATCGAGGTTCTGCAAGCTGTGACAGTC
JMSF007D24+                                    CCGGAGAGATCGAGGTTNTGCAAGCTGTGACAGTC
JMFF016K13+           AGGTATGGTACCGGAGAGTCCATTACCGGAGAGATCGAGGTTCTGCAAGCTGTGACAGTC
                      ____________________________________________________________
consensus             AGGTATGGTACCGGAGAGTCCATTACCGGAGAGATCGAGGTTCTGCAAGCTGTGACAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           CTGCAAGGCGCCGGGAACCTCGCCGCCGAGGTTCAACTCCCGGAGCTCCAACCCGATCAC
JMSF007D24+           CTGCAAGGCGCCGGGAACCTCGCCGCCGAGGTTCAACTCCCGGAGCTCCAACCCGATCAC
JMFF016K13+           CTGCAAGGCGCCGGGAACCTCGCCGCCGAGGTTCAACTCCCGGAGCTCCAACCCGATCAC
                      ____________________________________________________________
consensus             CTGCAAGGCGCCGGGAACCTCGCCGCCGAGGTTCAACTCCCGGAGCTCCAACCCGATCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           GCGATTCTCGTTGTCGTTCCAGCACGCCACGCCGACGAACTTGCAGATGAACCCGGCCGT
JMSF007D24+           GCGATTCTCGTTGTCGTTCCAGCACGCCACGCCGACGAACTTGCAGATGAACCCGGCCGT
JMFF016K13+           GCGATTCTCGTTGTCGTTCCAGCACGCCACGCCGACGAACTTGCAGATGAACCCGGCCGT
                      ____________________________________________________________
consensus             GCGATTCTCGTTGTCGTTCCAGCACGCCACGCCGACGAACTTGCAGATGAACCCGGCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           CGTGTTGTCAAAGTTCCACAGCCCCAGGTTGCCGTCCGGATCCCTAAACGACCCCTTCAC
JMSF007D24+           CGTGTTGTCAAAGTTCCACAGCCCCAGGTTGCCGTCCGGATCCCTAAACGACCCCTTCAC
JMFF016K13+           CGTGTTGTCAAAGTTCCACAGCCCCAGGTTGCCGTCCGGATCCCTAAACGACCCCTTCAC
                      ____________________________________________________________
consensus             CGTGTTGTCAAAGTTCCACAGCCCCAGGTTGCCGTCCGGATCCCTAAACGACCCCTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           ACCTTGCAAACACTTGACGTCATCTTCAGCCACCCCAACTCCGAACAGCACCAGAAGAAT
JMSF007D24+           ACCTTGCAAACACTTGACGTCATCTTCAGCCACCCCAACTCCGAACAGCACCAGAAGAAT
JMFF016K13+           ACCTTGCAAACACTTGACGTCATCTTCAGCCACCCCAACTCCGAACAGCACCAGAAGAAT
                      ____________________________________________________________
consensus             ACCTTGCAAACACTTGACGTCATCTTCAGCCACCCCAACTCCGAACAGCACCAGAAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           CGAAAGCTTCAAAAAACGGGAAAACCCAAACCCAACCATCCTAAAATCCGCTCAGTTCTA
JMSF007D24+           CGAAAGCTTCAAAAAACGGGAAAACCCAAACCCAACCATCCTAAAATCCGCTCAGTTCTA
JMFF016K13+           CGAAAGCTTCAAAAAACGGGAAAACCCAAACCCAACCATCCTAAAATCCGCTCAGTTCTA
                      ____________________________________________________________
consensus             CGAAAGCTTCAAAAAACGGGAAAACCCAAACCCAACCATCCTAAAATCCGCTCAGTTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           CAGCTTCAGAGCTCTTCTTCGACTGGTCCAGATGAGATGAGAAGTTTGGTATGCAGCGTT
JMSF007D24+           CAGCTTCAGAGCTCTTCTTCGACTGGTCCAGATGAGATGAGAAGTTTGGTATGCAGCGTT
JMFF016K13+           CAGCTTCAGAGCTCTTCTTCGACTGGTCCAGATGAGATGAGAAGTTTGGTATGCAGCGTT
                      ____________________________________________________________
consensus             CAGCTTCAGAGCTCTTCTTCGACTGGTCCAGATGAGATGAGAAGTTTGGTATGCAGCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF002D03+           GAACTGTAGAGGC                                               
JMSF007D24+           GAACTGTAGAGGC                                               
JMFF016K13+           GAACTGTAGAGGCATGGACTTTCAAAGCCGAAAGCTATTCCCCATTTGTTTTGTAATTCT
                      ____________________________________________________________
consensus             GAACTGTAGAGGCATGGACTTTCAAAGCCGAAAGCTATTCCCCATTTGTTTTGTAATTCT