Contig 004523:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006P07Sequence551004523 (2)gb|AAC50019.1|9e-63high mobility group protein 2 HMG2 [Ipomoea nil]397004133 (8)gb|AAC50019.1|3e-04high mobility group protein 2 HMG2 [Ipomoea nil]
JMFF016J21Sequence554004523 (2)gb|AAC50019.1|1e-62high mobility group protein 2 HMG2 [Ipomoea nil]677004133 (8)gb|AAC50019.1|6e-61high mobility group protein 2 HMG2 [Ipomoea nil]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+                                                            TCGTCGTTCAC
JMFF016J21+                                                         TCATCGTCGTTCAC
                      ____________________________________________________________
consensus                                                           TCATCGTCGTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           CTCTGACCTTGACTTGTCAGATTCCTCCTCATCGGCAGCTTCCCCGGCCTGTTTTCTATT
JMFF016J21+           CTCTGACCTTGACTTGTCAGATTCCTCCTCATCGGCAGCTTCCCCGGCCTGTTTTCTATT
                      ____________________________________________________________
consensus             CTCTGACCTTGACTTGTCAGATTCCTCCTCATCGGCAGCTTCCCCGGCCTGTTTTCTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           GTAGGCCTGCATGCTCTTTTCGTATTCCTGCTTCCTTTTCTCAGCCTTGGCTATGAAAGG
JMFF016J21+           GTAGGCCTGCATGCTCTTTTCGTATTCCTGCTTCCTTTTCTCAGCCTTGGCTATGAAAGG
                      ____________________________________________________________
consensus             GTAGGCCTGCATGCTCTTTTCGTATTCCTGCTTCCTTTTCTCAGCCTTGGCTATGAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           AGCTTTCTCAGCATCAGTGAGCTGTTTCCATTTGTCTCCTCCAGCTTTACCGACGGCTGC
JMFF016J21+           AGCTTTCTCAGCATCAGTGAGCTGTTTCCATTTGTCTCCTCCAGCTTTACCGACGGCTGC
                      ____________________________________________________________
consensus             AGCTTTCTCAGCATCAGTGAGCTGTTTCCATTTGTCTCCTCCAGCTTTACCGACGGCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           AACGGACTTGTTGTTTGGATGCTTTTCCTTGTACGTCTTGCGGAAGTCCTCCATGAACAC
JMFF016J21+           AACGGACTTGTTGTTTGGATGCTTTTCCTTGTACGTCTTGCGGAAGTCCTCCATGAACAC
                      ____________________________________________________________
consensus             AACGGACTTGTTGTTTGGATGCTTTTCCTTGTACGTCTTGCGGAAGTCCTCCATGAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           GAAGAAAGCACTCGGAGGCCTCTTCGGCTTGTTTGGATCCTTGACAGCTTTCTTCGCTTT
JMFF016J21+           GAAGAAAGCACTCGGAGGCCTCTTCGGCTTGTTTGGATCCTTGACAGCTTTCTTCGCTTT
                      ____________________________________________________________
consensus             GAAGAAAGCACTCGGAGGCCTCTTCGGCTTGTTTGGATCCTTGACAGCTTTCTTCGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           CTTAGTCTCACCGCCTCTCTTTTTCACGGCAAGCTTGTTATCAGCTTTGGCCTTGGATTT
JMFF016J21+           CTTAGTCTCACCGCCTCTCTTTTTCACGGCAAGCTTGTTATCAGCTTTGGCCTTGGATTT
                      ____________________________________________________________
consensus             CTTAGTCTCACCGCCTCTCTTTTTCACGGCAAGCTTGTTATCAGCTTTGGCCTTGGATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           ACCTCCCTTCATGGCGAAACCTGTGAAGAAACGACGAAAACCGGTGAGAATCGGTGGGGG
JMFF016J21+           ACCTCCCTTCATGGCGAAACCTGTGAAGAAACGACGAAAACCGGTGAGAATCGGTGGGGG
                      ____________________________________________________________
consensus             ACCTCCCTTCATGGCGAAACCTGTGAAGAAACGACGAAAACCGGTGAGAATCGGTGGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           AGTGACGGAAATCGGTAAGACTCGGGCGAGTCAGCGCCGCAGGGGTAGCGAGTTTACCTC
JMFF016J21+           AGTGACGGAAATCGGTAAGACTCGGGCGAGTCAGCGCCGCAGGGGTAGCGAGTTTACCTC
                      ____________________________________________________________
consensus             AGTGACGGAAATCGGTAAGACTCGGGCGAGTCAGCGCCGCAGGGGTAGCGAGTTTACCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006P07+           TAGGGTTGAGAGAGAGAGAGAGAAAGACAATAACACGAAGGGATGGATATGCTTTGGATT
JMFF016J21+           TAGGGTTGAGAGAGAGAGAGAGAAAGACAATAACACGAAGGGATGGATATGCTTTGGATT
                      ____________________________________________________________
consensus             TAGGGTTGAGAGAGAGAGAGAGAAAGACAATAACACGAAGGGATGGATATGCTTTGGATT