Contig 004522:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016I06Sequence603004522 (2)ref|XP_004235013.1|2e-76PREDICTED: protein GPR107-like [Solanum lycopersicum]804001088 (2)emb|CAJ77508.1|4e-112putative transmembrane receptor [Solanum tuberosum]
JMFF034M19Sequence499004522 (2)ref|XP_004235013.1|1e-53PREDICTED: protein GPR107-like [Solanum lycopersicum]663001088 (2)emb|CAJ77508.1|6e-77putative transmembrane receptor [Solanum tuberosum]

Alignment

This contig is upended


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JMFF016I06+                                                                    CCA
                      ____________________________________________________________
consensus                                                                      CCA
 
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JMFF016I06+           AGAAAACCAAGAAATATATCACAGGTAGAGCTGTCTTGCCTGCGGAGAGAAAATCAAGCT
                      ____________________________________________________________
consensus             AGAAAACCAAGAAATATATCACAGGTAGAGCTGTCTTGCCTGCGGAGAGAAAATCAAGCT
 
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JMFF034M19+                                                    TTCATGGAAACCTCCAGAT
JMFF016I06+           GGCCCGTTTTGGGGTTGAAATTATACATAACAGACTGAACATTCATGGAAACCTCCAGAT
                      ____________________________________________________________
consensus             GGCCCGTTTTGGGGTTGAAATTATACATAACAGACTGAACATTCATGGAAACCTCCAGAT
 
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JMFF034M19+           TGGGGATACAATTCGCGAACACCAGTGTGAATTGGTTTGCCTCCGAAACCTTGATGGAGG
JMFF016I06+           TGGGGATACAATTCGCGAACACCAGTGTGAATTGGTTTGCCTCCGAAACCTTGATGGAGG
                      ____________________________________________________________
consensus             TGGGGATACAATTCGCGAACACCAGTGTGAATTGGTTTGCCTCCGAAACCTTGATGGAGG
 
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JMFF034M19+           CGCTGTACTCATGGGCAGAGGGTTTGATTTGGTCGAAGGTAAAAACCCTAGTGATAAGTT
JMFF016I06+           CGCTGTACTCATGGGCAGAGGGTTTGATTTGGTCGAAGGTAAAAACCCTAGTGATAAGTT
                      ____________________________________________________________
consensus             CGCTGTACTCATGGGCAGAGGGTTTGATTTGGTCGAAGGTAAAAACCCTAGTGATAAGTT
 
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JMFF034M19+           CAGATTCGAGGGTGCACTGAATTTCCTTACTCTGGAACTGCTCGAGGACGTGCATCCAAG
JMFF016I06+           CAGATTCGAGGGTGCACTGAATTTCCTTACTCTGGAACTGCTCGAGGACGTGCATCCAAG
                      ____________________________________________________________
consensus             CAGATTCGAGGGTGCACTGAATTTCCTTACTCTGGAACTGCTCGAGGACGTGCATCCAAG
 
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JMFF034M19+           TATCGAGAGTACAGAGGAAGAAACCGAGCTGGGAAAGGTGCGGATCGGGCTGGCCTTTTG
JMFF016I06+           TATCGAGAGTACAGAGGAAGAAACCGAGCTGGGAAAGGTGCGGATCGGGCTGGCCTTTTG
                      ____________________________________________________________
consensus             TATCGAGAGTACAGAGGAAGAAACCGAGCTGGGAAAGGTGCGGATCGGGCTGGCCTTTTG
 
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JMFF034M19+           GAACGGAGAAGGAGAAGTCGGTGACGGAGAGGTTGAGACGGCCGGAGTGTGTGAAGCCGA
JMFF016I06+           GAACGGAGAAGGAGAAGTCGGTGACGGAGAGGTTGAGACGGCCGGAGTGTGTGAAGCCGA
                      ____________________________________________________________
consensus             GAACGGAGAAGGAGAAGTCGGTGACGGAGAGGTTGAGACGGCCGGAGTGTGTGAAGCCGA
 
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JMFF034M19+           ATTCATCGAAAGGGATGGTGGATCGGGCGTCAGATCGGATCTCGGTGGACCGGATCTCAG
JMFF016I06+           ATTCATCGAAAGGGATGGTGGATCGGGCGTCAGATCGGATCTCGGTGGACCGGATCTCAG
                      ____________________________________________________________
consensus             ATTCATCGAAAGGGATGGTGGATCGGGCGTCAGATCGGATCTCGGTGGACCGGATCTCAG
 
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JMFF034M19+           CAAAGGCGGTAGCAAACAAGAGAGCGAAGGCCAGAGTTGGCAAACAGAGACGCAGCCGGA
JMFF016I06+           CAAAGGCGGTAGCAAACAAGAGAGCGAAGGCCAGAGTTGGCAAACAGAGACGCAGCCGGA
                      ____________________________________________________________
consensus             CAAAGGCGGTAGCAAACAAGAGAGCGAAGGCCAGAGTTGGCAAACAGAGACGCAGCCGGA
 
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JMFF034M19+           AATGAGCCATGGGAGTAGAATTTGGTCTTCCAGAGAGAAGAAAACTCACCGACGATCACC
JMFF016I06+           AATGAGCCATGGGAGTAGAATTTGGTCTTCCAGAGAGAAGAAAACTCACCGACGACCACC
                      ____________________________________________________________
consensus             AATGAGCCATGGGAGTAGAATTTGGTCTTCCAGAGAGAAGAAAACTCACCGACGATCACC