| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014H10 | Sequence | 538 | 004521 (7) | ||||||||
| JMFF016H09 | Sequence | 539 | 004521 (7) | ||||||||
| JMFF022G10 | Sequence | 491 | 004521 (7) | emb|CAN73899.1| | 8e-09 | hypothetical protein VITISV_004904 [Vitis vinifera] | 715 | 022335 | ref|XP_006343143.1| | 2e-82 | PREDICTED: auxin-responsive protein IAA26-like [Solanum tuberosum] |
| JMSF020N08 | Sequence | 644 | 004521 (7) | emb|CBI36050.3| | 3e-07 | unnamed protein product [Vitis vinifera] | 785 | 004521 (7) | ref|XP_006343143.1| | 7e-87 | PREDICTED: auxin-responsive protein IAA26-like [Solanum tuberosum] |
| JMSF040P03 | Sequence | 673 | 004521 (7) | ref|XP_002283588.2| | 2e-32 | PREDICTED: auxin-responsive protein IAA26-like isoform X2 [Vitis vinifera] | 758 | 004521 (7) | ref|XP_009338732.1| | 4e-63 | PREDICTED: auxin-responsive protein IAA26-like [Pyrus x bretschneideri] ref|XP_0 |
This contig is upended
. : . : . : . : . : . :
rJMSF040P03- TGTTTATTTTTTNCTGAACATTGCTGCTTCNACTCAAAATT
____________________________________________________________
consensus TGTTTATTTTTTNCTGAACATTGCTGCTTCNACTCAAAATT
. : . : . : . : . : . :
rJMSF040P03- TTATCCAAAAACATAGATGACTTACAAAAACAACTCANCACAATANTTGCAAAAGACTCT
rJMSF020N08- AAAACATAGATGACTTACAAAAACAACTCAACACAATATTTGCAAAAGACTCT
____________________________________________________________
consensus TTATCCAAAAACATAGATGACTTACAAAAACAACTCAACACAATATTTGCAAAAGACTCT
. : . : . : . : . : . :
rJMSF040P03- TCACACAAGAGGCTGCTTAGCTTCCTCNTTGTTAAGTNAGAGCTTCANCTGCTTCCCNCG
rJMSF020N08- TCACACAAAAGGCTGCTTAGCTTCCTCCTTGTTAAGTTAGAGCTTCACCTGCTTCCCACG
____________________________________________________________
consensus TCACACAAGAGGCTGCTTAGCTTCCTCCTTGTTAAGTTAGAGCTTCACCTGCTTCCCACG
. : . : . : . : . : . :
rJMSF040P03- GNTNAGACTCGNGAGCTNAGAGGTTTTCAACACGCGCAGCCTCTTCACAGNCGACACAAA
rJMSF020N08- GCTTAGACTCGAGAGCTCAGAGGTTTTCAACACGCGCAGCCTCTTCACAGTCGACACAAA
____________________________________________________________
consensus GCTTAGACTCGAGAGCTCAGAGGTTTTCAACACGCGCAGCCTCTTCACAGTCGACACAAA
. : . : . : . : . : . :
rJMSF040P03- CANTTGCCGNTGGACATCATCCCCAACGAGCATNGNGTCCCCTTCATTATCCTCGTAAAC
rJMSF020N08- CATTTGCCAATGGACATCATCCCCAACGAGCATCGTGTCCCCTTCATTATCCTCGTAAAC
____________________________________________________________
consensus CATTTGCCGATGGACATCATCCCCAACGAGCATCGTGTCCCCTTCATTATCCTCGTAAAC
. : . : . : . : . : . :
rJMSF040P03- NNGGGNATATTCNCCGCTTCCATCTAACAATCCAGTTATCGCTTTCTCTCCCCCTTCAGN
rJMSF020N08- CAGGGTATATTCCCCGCTTCCATCTAACAATCCAGTTATCGCTTTCTCTCCCCCTTCAGT
____________________________________________________________
consensus CAGGGTATATTCCCCGCTTCCATCTAACAATCCAGTTATCGCTTTCTCTCCCCCTTCAGT
. : . : . : . : . : . :
rJMSF040P03- TNGAGCTGCAAGAAGGCCTTTAAAGAGTTCNTTGACAGNAGAAGCAAGTTTTTCGTAGCT
rJMSF020N08- TTGAGCTGCAAGAAGGCCTTTAAAGAGTTCATTGACAGCAGAAGCAAGTTTTTCGTAGCT
____________________________________________________________
consensus TTGAGCTGCAAGAAGGCCTTTAAAGAGTTCATTGACAGCAGAAGCAAGTTTTTCGTAGCT
. : . : . : . : . : . :
rJMSF040P03- GTCANAGGCGCTGAGATCCACTTTTCTTCCAATCGGGATTCCATCNATGTTAATCTTAAC
rJMSF020N08- GTCATAGGCGCTGAGATCCACTTTTCTTCCAATCGGGATTCCATCCATGTTAATCTTAAC
____________________________________________________________
consensus GTCATAGGCGCTGAGATCCACTTTTCTTCCAATCGGGATTCCATCCATGTTAATCTTAAC
. : . : . : . : . : . :
rJMSF040P03- AAAGAAACCTTNNTGGCTCCTTTCCNTCGGTTTTTCACTCGAAAANTTGTNCNAGACTGC
rJMSF020N08- AAAGAAACCTTTTTGGCTCCTTTCCATCGGTTTTTCACTCGAAAACTTGTTCGAGACTGC
____________________________________________________________
consensus AAAGAAACCTTTTTGGCTCCTTTCCATCGGTTTTTCACTCGAAAACTTGTTCGAGACTGC
. : . : . : . : . : . :
rJMSF040P03- ATNTNGTGACTCCGGGANTTGTTTNANAGAGCTGCTACTTGCAAGATTCTTNCTGAACGA
rJMSF020N08- ATTTTGTGACTCCGGGATTTGTTTCAGAGAGCTGCTACTTGCAAGATTCTTCCTGAACGA
JMSF040P03+ AGAGCTGCTACNTGCAAGATTNTTCCTGAACGA
____________________________________________________________
consensus ATTTTGTGACTCCGGGATTTGTTTCAGAGAGCTGCTACTTGCAAGATTCTTCCTGAACGA
. : . : . : . : . : . :
rJMSF040P03- ACGANGTGGCGGCCACCCCACAGCTGGAGAAGGAGCAGTCCTTTTCTGAGAGGTGNTTGG
rJMSF020N08- ACGAAGTGGCGGCCACCCCACAACTGGAGAAGGAGCAGTCCTTTTCTGAGAGGTGTTTGG
JMSF040P03+ ACGAAGTGGCGGCCACCCCACAACTGGAGAAGGAGCAGTCCTTTTCTGAGAGGTGTTTGG
____________________________________________________________
consensus ACGAAGTGGCGGCCACCCCACAACTGGAGAAGGAGCAGTCCTTTTCTGAGAGGTGTTTGG
. : . : . : . : . : . :
rJMSF040P03- CACAGCAGGTGGNGAANATGCCATCTTCNCTGAGCTGTTCAAGTCTACACCTTTAGAACA
rJMSF020N08- CACAGCAGGTGGTGAAAATGCCATCTTCTCTGAACTGTTCAAGTCTACACCTTTAGAACA
JMSF040P03+ CACAGCAGGTGGTGAAAATGCCATCTTCTCTGAACTGTTCAAGTCTACACCTTTAGAACA
____________________________________________________________
consensus CACAGCAGGTGGTGAAAATGCCATCTTCTCTGAACTGTTCAAGTCTACACCTTTAGAACA
. : . : . : . : . : . :
rJMSF040P03- CCNAGGTTGTGATGGTTNCTGGGGCCTCANAGGCAAACNCTGGCTCTGGCTGG
rJMSF020N08- CCCAGGTTGTGATGGTTCCTGGGGCCTCACAGGCAAACACTGGCTCTGGCTGGGTGATTG
JMFF022G10+ GCCTCACAGGCAAACACTGGCTCTGGCTGGGTGATTG
JMSF040P03+ CCCAGGTTGTGATGGTTCCTGGGGCCTCACAGGCAAACACTGGCTCTGGCTGGGTGATTG
____________________________________________________________
consensus CCCAGGTTGTGATGGTTCCTGGGGCCTCACAGGCAAACACTGGCTCTGGCTGGGTGATTG
. : . : . : . : . : . :
rJMSF020N08- AAGGCC-ANGAAGGATGAGAACTGATGGGGGGGTTGGGCTCCATTAACAGGAGCTTC
JMFF022G10+ AAGGCCAAGGAAGGATGAGAACTGATGGGGGGGTTGGGCTCCATTAACAGGAGCTTCCAA
JMSF040P03+ AAGGCCAAGGAAGGATGAGAACTGATGGGGGGGTTGGGCTCCATTAACAGGAGCTTCCAA
____________________________________________________________
consensus AAGGCCAAGGAAGGATGAGAACTGATGGGGGGGTTGGGCTCCATTAACAGGAGCTTCCAA
. : . : . : . : . : . :
JMFF022G10+ GAACCCTCTCTTTGCAGAAGCACAGGAGAAATGGGTGAAGGAGAGGTGTGAATGTGAATC
JMSF040P03+ GAACCCTCTCTTTGCAGAAGCACAGGAGAAATGGGTGAAGGAGAGGTGTGAATGTGAATC
____________________________________________________________
consensus GAACCCTCTCTTTGCAGAAGCACAGGAGAAATGGGTGAAGGAGAGGTGTGAATGTGAATC
. : . : . : . : . : . :
JMFF022G10+ ATCTCTTCCCCTAACCTTGGACCTATCTTTCACACACCACTCTCCATCTGGTGGACCAAG
JMSF040P03+ ATCTCTTCCCCTAACCTTGGACCTATCTTTCACACACCACTCTCCATCTGGTGGACCAAG
JMSF020N08+ CTAACCTTGGACCTATCTTTCACACACCACTCTCCATCTGGTGGACCAAG
____________________________________________________________
consensus ATCTCTTCCCCTAACCTTGGACCTATCTTTCACACACCACTCTCCATCTGGTGGACCAAG
. : . : . : . : . : . :
JMFF022G10+ CCTCAGTTCCAGCTTTTTCTCTTCAGAAACCCCATGGCTTCTCCCTTCAAACAGAACCTT
JMSF040P03+ CCTCAGTTCCAGCTTTTTCTCTTCAGAAACCCCATGGCTTCTCCCTTCAAACAGAACCTT
JMSF020N08+ CCTCAGTTCCAGCTTTTTCTCTTCAGAAACCCCATGGCTTCTCCCTTCAAACAGAACCTT
____________________________________________________________
consensus CCTCAGTTCCAGCTTTTTCTCTTCAGAAACCCCATGGCTTCTCCCTTCAAACAGAACCTT
. : . : . : . : . : . :
JMFF022G10+ ATTGCATTTCTCTTCCTTTCTTGAATATCCCTCCATGTTTTTTTTCCTGACAACACAAAA
JMSF040P03+ ATTGCATTTCTCTTCCTTTCTTGAATATCCCTCCATGTTTTTTTTCCTGACAACACAAAA
JMSF020N08+ ATTGCATTTCTCTTCCTTTCTTGAATATCCCTCCATGTTTTTTTTCCTGACAACACAAAA
____________________________________________________________
consensus ATTGCATTTCTCTTCCTTTCTTGAATATCCCTCCATGTTTTTTTTCCTGACAACACAAAA
. : . : . : . : . : . :
JMFF022G10+ TAAACAAAAAAACCCACTCCACAGAGATCTTTCAATTAAAGCTGAAAGTTATAGACACCC
JMSF040P03+ TAAACAAAAAAACCCACTCCACAGAGATCTTTCAATTAAAGCTGAAAGTTATAGACACCC
JMSF020N08+ TAAACAAAAAAACCCACTCCACAGAGATCTTTCAATTAAAGCTGAAAGTTATAGACACCC
JMFF014H10+ CAATTAAAGCTGAAAGTTATAGACACCC
JMFF016H09+ CAATTAAAGCTGAAAGTTATAGACACCC
____________________________________________________________
consensus TAAACAAAAAAACCCACTCCACAGAGATCTTTCAATTAAAGCTGAAAGTTATAGACACCC
. : . : . : . : . : . :
JMFF022G10+ CCATG-CCTCAACCTCAAGAACTGTGAAACCCAGACAGTGAAACCTGAATGGAGTGTGAC
JMSF040P03+ CCATG-CCTCAACCTCAAGAACTGTGAAACCCAGACAGTGAAACCTGAATGGAGTGTGAC
JMSF020N08+ CCATG-CCTCAACCTCAAGAACTGTGAAACCCAGACAGTGAAACCTGAATGGAGTGTGAC
JMFF014H10+ CCATGCCCTCAACCTCAAGAACTGTGAAACCCAGACAGTGAAACCTGAATGGAGTGTGAC
JMFF016H09+ CCATG-CCTCAACCTCAAGAACTGTGAAACCCAGACAGTGAAACCTGAATGGAGTGTGAC
____________________________________________________________
consensus CCATG-CCTCAACCTCAAGAACTGTGAAACCCAGACAGTGAAACCTGAATGGAGTGTGAC
. : . : . : . : . : . :
JMFF022G10+ AGACTACAAGATGAAGAGCAAAGACAAGAAGAAAC
JMSF040P03+ AGACTACAAGATGAAGAGCAAAGACAAGAAGAAAC
JMSF020N08+ AGACTACAAGATGAAGAGCAAAGACAAGAAGAAACAGGGAAAACTACAAGTGAAGTGTTA
JMFF014H10+ AGACTACAAGATGAAGAGCAAAGACAAGAAGAAACAGGGAAAACTACAAGTGAAGTGTTA
JMFF016H09+ AGACTACAAGATGAAGAGCAAAGACAAGAAGAAACAGGGAAAACTACAAGTGAAGTGTTA
____________________________________________________________
consensus AGACTACAAGATGAAGAGCAAAGACAAGAAGAAACAGGGAAAACTACAAGTGAAGTGTTA
. : . : . : . : . : . :
JMSF020N08+ GCTAAATAGGATTGTGATCCAAAGCTTTAATTTTAATTTCTCTGGTTTTCTTTATTACAA
JMFF014H10+ GCTAAATAGGATTGTGATCCAAAGCTTTAATTTTAATTTCTCTGGTTTTCTTTATTACAA
JMFF016H09+ GCTAAATAGGATTGTGATCCAAAGCTTTAATTTTAATTTCTCTGGTTTTCTTTATTACAA
____________________________________________________________
consensus GCTAAATAGGATTGTGATCCAAAGCTTTAATTTTAATTTCTCTGGTTTTCTTTATTACAA
. : . : . : . : . : . :
JMSF020N08+ ACTTTCTGTCTTTTTGTTGGGAGTAAAGAAAGGCTGAAAGCAAGGGGATTAAAGATTGGA
JMFF014H10+ ACTTTCTGTCTTTTTGTTGGGAGTAAAGAAAGGCTGAAAGCAAGGGGATTAAAGATTGGA
JMFF016H09+ ACTTTCTGTCTTTTTGTTGGGAGTAAAGAAAGGCTGAAAGCAAGGGGATTAAAGATTGGA
____________________________________________________________
consensus ACTTTCTGTCTTTTTGTTGGGAGTAAAGAAAGGCTGAAAGCAAGGGGATTAAAGATTGGA
. : . : . : . : . : . :
JMSF020N08+ AGAGATTAGAAGAAGGAGAAAGAATCTGTTTTTGTAAACGGAATTGGAGAAGTTCTCACA
JMFF014H10+ AGAGATTAGAAGAAGGAGAAAGAATCTGTTTTTGTAAACGGAATTGGAGAAGTTCTCACA
JMFF016H09+ AGAGATTAGAAGAAGGAGAAAGAATCTGTTTTTGTAAACGGAATTGGAGAAGTTCTCACA
____________________________________________________________
consensus AGAGATTAGAAGAAGGAGAAAGAATCTGTTTTTGTAAACGGAATTGGAGAAGTTCTCACA
. : . : . : . : . : . :
JMSF020N08+ CAAGACGCAACCCTTGAAATTTGTTGTGATCCGTGGGCAAGGCAGCAAGCGTGCTCTGCT
JMFF014H10+ CAAGACGCAACCCTTGAAATTTGTTGTGATCCGTGGGCAAGGCAGCAAGCGTGCTCTGCT
JMFF016H09+ CAAGACGCAACCCTTGAAATTTGTTGTGATCCGTGGGCAAGGCAGCAAGCGTGCTCTGCT
____________________________________________________________
consensus CAAGACGCAACCCTTGAAATTTGTTGTGATCCGTGGGCAAGGCAGCAAGCGTGCTCTGCT
. : . : . : . : . : . :
JMSF020N08+ GACTCTCTCTCTGTCTAGAAAAACAGATACCTCATTACTGTGTGTGAGAGAGAT
JMFF014H10+ GACTCTCTCTCTGTCTAGAAAAACAGATACCTCATTACTGTGTGTGAGAGAGATAGAGAC
JMFF016H09+ GACTCTCTCTCTGTCTAGAAAAACAGATACCTCATTACTGTGTGTGAGAGAGATAGAGAC
____________________________________________________________
consensus GACTCTCTCTCTGTCTAGAAAAACAGATACCTCATTACTGTGTGTGAGAGAGATAGAGAC
. : . : . : . : . : . :
JMFF014H10+ TAGAGAGAGAAAAGAGACATTAATATACATATAGAATGACAATGACAGAATTCCTGAGAT
JMFF016H09+ TAGAGAGAGAAAAGAGACATTAATATACATATAGAATGACAATGACAGAATTCCTGAGAT
____________________________________________________________
consensus TAGAGAGAGAAAAGAGACATTAATATACATATAGAATGACAATGACAGAATTCCTGAGAT