Contig 004516:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015A22Sequence564004516 (4)ref|XP_010519336.1|3e-48PREDICTED: 60S ribosomal protein L22-2-like [Tarenaya hassleriana]575004516 (4)ref|XP_010519336.1|2e-48PREDICTED: 60S ribosomal protein L22-2-like [Tarenaya hassleriana]
JMFF018I08Sequence562004516 (4)ref|XP_010519336.1|3e-48PREDICTED: 60S ribosomal protein L22-2-like [Tarenaya hassleriana]584004516 (4)ref|XP_010519336.1|3e-48PREDICTED: 60S ribosomal protein L22-2-like [Tarenaya hassleriana]

Alignment

This contig is upended


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rJMFF015A22-                                                        AATATTGCAATTAC
rJMFF018I08-                                              TTCTATGCCAAATATTGCAATTAC
JMFF018I08+                                                 CTATGCCAAATATTGCAATTAC
JMFF015A22+                                                 CTATGCCAAATATTGCAATTAC
                      ____________________________________________________________
consensus                                                 TTCTATGCCAAATATTGCAATTAC
 
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rJMFF015A22-          TCTCTGCTTCAAAAACATATTGTAAAAGATGTTCTTCAACACAATCAATATCAATTAAGA
rJMFF018I08-          TCTCTGCTTCAAAAACATATTGTAAAAGATGTTCTTCAACACAATCAATATCAATTAAGA
JMFF018I08+           TCTCTGCTTCAAAAACATATTGTAAAAGATGTTCTTCAACACAATCAATATCAATTAAGA
JMFF015A22+           TCTCTGCTTCAAAAACATATTGTAAAAGATGTTCTTCAACACAATCAATATCAATTAAGA
                      ____________________________________________________________
consensus             TCTCTGCTTCAAAAACATATTGTAAAAGATGTTCTTCAACACAATCAATATCAATTAAGA
 
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rJMFF015A22-          GAAAATGAGCACTCTGAACTAAGAAATCAATGATATCTAGAAAATAAAGAGTTATCCACC
rJMFF018I08-          GAAAATGAGCACTCTGAACTAAGAAATCAATGATATCTAGAAAATAAAGAGTTATCCACC
JMFF018I08+           GAAAATGAGCACTCTGAACTAAGAAATCAATGATATCTAGAAAATAAAGAGTTATCCACC
JMFF015A22+           GAAAATGAGCACTCTGAACTAAGAAATCAATGATATCTAGAAAATAAAGAGTTATCCACC
                      ____________________________________________________________
consensus             GAAAATGAGCACTCTGAACTAAGAAATCAATGATATCTAGAAAATAAAGAGTTATCCACC
 
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rJMFF015A22-          CCCTTACTCTTCGTCATCCCCTGAATCATTCTCAGCTATGTTGAAGTACCTCAATTCGTA
rJMFF018I08-          CCCTTACTCTTCGTCATCCCCTGAATCATTCTCAGCTATGTTGAAGTACCTCAATTCGTA
JMFF018I08+           CCCTTACTCTTCGTCATCCCCTGAATCATTCTCAGCTATGTTGAAGTACCTCAATTCGTA
JMFF015A22+           CCCTTACTCTTCGTCATCCCCTGAATCATTCTCAGCTATGTTGAAGTACCTCAATTCGTA
                      ____________________________________________________________
consensus             CCCTTACTCTTCGTCATCCCCTGAATCATTCTCAGCTATGTTGAAGTACCTCAATTCGTA
 
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rJMFF015A22-          GACACTTCTATCCTTGTTCGAAGATATAACACGCAGCCAATCACGCACATTGTTCTTCTT
rJMFF018I08-          GACACTTCTATCCTTGTTCGAAGATATAACACGCAGCCAATCACGCACATTGTTCTTCTT
JMFF018I08+           GACACTTCTATCCTTGTTCGAAGATATAACACGCAGCCAATCACGCACATTGTTCTTCTT
JMFF015A22+           GACACTTCTATCCTTGTTCGAAGATATAACACGCAGCCAATCACGCACATTGTTCTTCTT
                      ____________________________________________________________
consensus             GACACTTCTATCCTTGTTCGAAGATATAACACGCAGCCAATCACGCACATTGTTCTTCTT
 
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rJMFF015A22-          TAGATACTTCTTTGTCAAGTATTTCAAATACCTCTTGGAAAAGTTGGAGTCTGCCGTGAC
rJMFF018I08-          TAGATACTTCTTTGTCAAGTATTTCAAATACCTCTTGGAAAAGTTGGAGTCTGCCGTGAC
JMFF018I08+           TAGATACTTCTTTGTCAAGTATTTCAAATACCTCTTGGAAAAGTTGGAGTCTGCCGTGAC
JMFF015A22+           TAGATACTTCTTTGTCAAGTATTTCAAATACCTCTTGGAAAAGTTGGAGTCTGCCGTGAC
                      ____________________________________________________________
consensus             TAGATACTTCTTTGTCAAGTATTTCAAATACCTCTTGGAAAAGTTGGAGTCTGCCGTGAC
 
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rJMFF015A22-          GGTGATTTTGGTCTTGTCGCGGGTGACCGTGACGGAGTCTCCGAGCGCTCCCGGCTTTCC
rJMFF018I08-          GGTGATTTTGGTCTTGTCGCGGGTGACCGTGACGGAGTCTCCGAGCGCTCCCGGCTTTCC
JMFF018I08+           GGTGATTTTGGTCTTGTCGCGGGTGACCGTGACGGAGTCTCCGAGCGCTCCCGGCTTTCC
JMFF015A22+           GGTGATTTTGGTCTTGTCGCGGGTGACCGTGACGGAGTCTCCGAGCGCTCCCGGCTTTCC
                      ____________________________________________________________
consensus             GGTGATTTTGGTCTTGTCGCGGGTGACCGTGACGGAGTCTCCGAGCGCTCCCGGCTTTCC
 
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rJMFF015A22-          GCCGACCTTGATGCGCTCCTGGAGAAACTTCTCCAGTGAAGCGATATCCATGATTTTATC
rJMFF018I08-          GCCGACCTTGATGCGCTCCTGGAGAAACTTCTCCAGTGAAGCGATATCCATGATTTTATC
JMFF018I08+           GCCGACCTTGATGCGCTCCTGGAGAAACTTCTCCAGTGAAGCGATATCCATGATTTTATC
JMFF015A22+           GCCGACCTTGATGCGCTCCTGGAGAAACTTCTCCAGTGAAGCGATATCCATGATTTTATC
                      ____________________________________________________________
consensus             GCCGACCTTGATGCGCTCCTGGAGAAACTTCTCCAGTGAAGCGATATCCATGATTTTATC
 
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rJMFF015A22-          GTCCACGGGCTTCGAACAGTCAATCACGAACGTCGATCCCTTCTTCTTCCCACCCTTGGT
rJMFF018I08-          GTCCACGGGCTTCGAACAGTCAATCACGAACGTCGATCCCTTCTTCTTCCCACCCTTGGT
JMFF018I08+           GTCCACGGGCTTCGAACAGTCAATCACGAACGTCGATCCCTTCTTCTTCCCACCCTTGGT
JMFF015A22+           GTCCACGGGCTTCGAACAGTCAATCACGAACGTCGATCCCTTCTTCTTCCCACCCTTGGT
                      ____________________________________________________________
consensus             GTCCACGGGCTTCGAACAGTCAATCACGAACGTCGATCCCTTCTTCTTCCCACCCTTGGT
 
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rJMFF015A22-          GGCCCCAGCTCCGCTGCTAACTTTGCTCATT                             
rJMFF018I08-          GGCCCCAGCTCCGCTGCTAACTTTGCTCATT                             
JMFF018I08+           GGCCCCAGCTCCGCTGCTAACTTTGCTCATTTTCTCCGTGTAAACCCTTCACGGTGCTTG
JMFF015A22+           GGCCCCAGCTCCGCTGCTAACTTTGCTCATTTTCTCCGTGTAAACCCTTCACGGTGCTTG
                      ____________________________________________________________
consensus             GGCCCCAGCTCCGCTGCTAACTTTGCTCATTTTCTCCGTGTAAACCCTTCACGGTGCTTG