| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011A07 | Sequence | 431 | 004513 (8) | emb|CAB56569.1| | 3e-32 | squamosa promoter binding protein-homologue 4 [Antirrhinum majus] | 707 | 004513 (8) | ref|XP_009792000.1| | 2e-33 | PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris] |
| JMFF013O03 | Sequence | 549 | 004513 (8) | ref|XP_009776998.1| | 4e-62 | PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris] | 786 | 004513 (8) | gb|AJO69986.1| | 5e-47 | SBP-box 9 [Nicotiana tabacum] |
| JMFF019E05 | Sequence | 525 | 004513 (8) | ref|XP_009776998.1| | 4e-67 | PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris] | 722 | 004513 (8) | ref|XP_009792000.1| | 8e-43 | PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris] |
| JMFF032F11 | Sequence | 516 | 004513 (8) | ref|XP_009776998.1| | 9e-60 | PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris] | 793 | 004513 (8) | gb|AJO69986.1| | 2e-56 | SBP-box 9 [Nicotiana tabacum] |
This contig is upended
. : . : . : . : . : . :
rJMFF013O03- ACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
rJMFF019E05- ACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
rJMFF011A07- ACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
rJMFF032F11- CACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
____________________________________________________________
consensus CACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
. : . : . : . : . : . :
rJMFF013O03- AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
rJMFF019E05- AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
rJMFF011A07- AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
rJMFF032F11- AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
____________________________________________________________
consensus AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
. : . : . : . : . : . :
rJMFF013O03- ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
rJMFF019E05- ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
rJMFF011A07- ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
rJMFF032F11- ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
____________________________________________________________
consensus ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
. : . : . : . : . : . :
rJMFF013O03- CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
rJMFF019E05- CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
rJMFF011A07- CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
rJMFF032F11- CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
____________________________________________________________
consensus CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
. : . : . : . : . : . :
rJMFF013O03- CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
rJMFF019E05- CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
rJMFF011A07- CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
rJMFF032F11- CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
____________________________________________________________
consensus CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
. : . : . : . : . : . :
rJMFF013O03- ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
rJMFF019E05- ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
rJMFF011A07- ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
rJMFF032F11- ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
____________________________________________________________
consensus ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
. : . : . : . : . : . :
rJMFF013O03- TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
rJMFF019E05- TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
rJMFF011A07- TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
rJMFF032F11- TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
____________________________________________________________
consensus TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
. : . : . : . : . : . :
rJMFF013O03- AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
rJMFF019E05- AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
rJMFF011A07- AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
rJMFF032F11- AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
____________________________________________________________
consensus AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
. : . : . : . : . : . :
rJMFF013O03- GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
rJMFF019E05- GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
rJMFF011A07- GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
rJMFF032F11- GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
____________________________________________________________
consensus GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
. : . : . : . : . : . :
rJMFF013O03- CAAGGACTGGGATAAGTAGCCCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
rJMFF019E05- CAAGGACTGGGATAAGTAGCCCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
rJMFF011A07- CAAGGACTGGGATAAGTAG-CCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
rJMFF032F11- CAAGGACTGGGATAAGTAGCCCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
____________________________________________________________
consensus CAAGGACTGGGATAAGTAGCCCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
. : . : . : . : . : . :
rJMFF013O03- GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
rJMFF019E05- GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
rJMFF011A07- GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
rJMFF032F11- GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
____________________________________________________________
consensus GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
. : . : . : . : . : . :
rJMFF013O03- CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
rJMFF019E05- CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
rJMFF011A07- CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
rJMFF032F11- CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
JMFF019E05+ CCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
JMFF013O03+ CATCACAAAG
____________________________________________________________
consensus CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
. : . : . : . : . : . :
rJMFF013O03- TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATATGGGA
rJMFF019E05- TGGCCATTGTTTCCAAACATTGAAGA
rJMFF011A07- TGGCCATTGTTT
rJMFF032F11- TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
JMFF019E05+ TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
JMFF032F11+ AGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
JMFF013O03+ TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
____________________________________________________________
consensus TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
. : . : . : . : . : . :
rJMFF013O03- TCCAAGTGGGGGCTTCCTACGACGCTCATT
rJMFF032F11- TCCAAGTGGGGGCTTCCTACGACGCTCATTATGACCA
JMFF019E05+ TCCAAGTGGGGGCTTCCTACGACGCTCATTATGACCAGCCAAACGCCTACGGCAGCTCCT
JMFF032F11+ TCCAAGTGGGGGCTTCTTACGACGCTCATTATGACCAGCCAAACGCCTACGGCAGCTCCT
JMFF013O03+ TCCAAGTGGGGGCTTCNTACGACGCTCATTATGACCAGCCAAACGCCTACGGCAGCTCCT
____________________________________________________________
consensus TCCAAGTGGGGGCTTCCTACGACGCTCATTATGACCAGCCAAACGCCTACGGCAGCTCCT
. : . : . : . : . : . :
JMFF019E05+ TTTTACTTGATCAAATTCACTCAATTGATGAAACCTGCTGCACTGCTGGCAGAATCTCTG
JMFF032F11+ TTTTACTTGATCAAATTCACTCAATTGATGAAACCTGCTGCACTGCTGGCAGAATCTCTG
JMFF011A07+ TGCTGCACTACTGGCAGAATCTCTG
JMFF013O03+ TTTTACTTGATCAAATTCACTCAATTGATGAAACCTGCTGCACTGCTGGCAGAATCTCTG
____________________________________________________________
consensus TTTTACTTGATCAAATTCACTCAATTGATGAAACCTGCTGCACTGCTGGCAGAATCTCTG
. : . : . : . : . : . :
JMFF019E05+ TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
JMFF032F11+ TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
JMFF011A07+ TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
JMFF013O03+ TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
____________________________________________________________
consensus TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
. : . : . : . : . : . :
JMFF019E05+ TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
JMFF032F11+ TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
JMFF011A07+ TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
JMFF013O03+ TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
____________________________________________________________
consensus TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
. : . : . : . : . : . :
JMFF019E05+ TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCACC
JMFF032F11+ TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCACC
JMFF011A07+ TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCTCC
JMFF013O03+ TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCACC
____________________________________________________________
consensus TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCACC
. : . : . : . : . : . :
JMFF019E05+ ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
JMFF032F11+ ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
JMFF011A07+ ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
JMFF013O03+ ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
____________________________________________________________
consensus ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
. : . : . : . : . : . :
JMFF019E05+ GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
JMFF032F11+ GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
JMFF011A07+ GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
JMFF013O03+ GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
____________________________________________________________
consensus GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
. : . : . : . : . : . :
JMFF019E05+ GAGCCCATTC
JMFF032F11+ TAGCCCATTCACCACATCTTTTTTGGGTCAAATCATTGAAATGCAGAACACTGACAC
JMFF011A07+ GAGCCCATTCACCACATCTTTTTTGGGTCAAATCATTGAAATGCAGAACACTGACAC
JMFF013O03+ TAGCCCATTCACCACATCTTTTTTGGGTCAAATCATTGAAATGCAGAACACTGACACTGT
____________________________________________________________
consensus TAGCCCATTCACCACATCTTTTTTGGGTCAAATCATTGAAATGCAGAACACTGACACTGT