Contig 004513:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011A07Sequence431004513 (8)emb|CAB56569.1|3e-32squamosa promoter binding protein-homologue 4 [Antirrhinum majus]707004513 (8)ref|XP_009792000.1|2e-33PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris]
JMFF013O03Sequence549004513 (8)ref|XP_009776998.1|4e-62PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris]786004513 (8)gb|AJO69986.1|5e-47SBP-box 9 [Nicotiana tabacum]
JMFF019E05Sequence525004513 (8)ref|XP_009776998.1|4e-67PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris]722004513 (8)ref|XP_009792000.1|8e-43PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris]
JMFF032F11Sequence516004513 (8)ref|XP_009776998.1|9e-60PREDICTED: squamosa promoter-binding-like protein 9 [Nicotiana sylvestris]793004513 (8)gb|AJO69986.1|2e-56SBP-box 9 [Nicotiana tabacum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF013O03- ACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
rJMFF019E05- ACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
rJMFF011A07- ACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
rJMFF032F11- CACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
                      ____________________________________________________________
consensus CACTTTATTTAGTGCTTCATGAAAGTCAGAGGAAGAT
 
. : . : . : . : . : . :
rJMFF013O03- AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
rJMFF019E05- AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
rJMFF011A07- AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
rJMFF032F11- AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
                      ____________________________________________________________
consensus AAAGTCATCTTAGAAGAGCACAAAATAACACTCCAGAATAGCAAATGCAAGTATCTAACA
 
. : . : . : . : . : . :
rJMFF013O03- ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
rJMFF019E05- ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
rJMFF011A07- ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
rJMFF032F11- ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
                      ____________________________________________________________
consensus ACATAACAAAAGATGAAACTTTTGTAACACACTTGTGTTTCAAACAACATTCAGAGAGTC
 
. : . : . : . : . : . :
rJMFF013O03- CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
rJMFF019E05- CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
rJMFF011A07- CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
rJMFF032F11- CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
                      ____________________________________________________________
consensus CAGTGCACATTCTGGACAGAAGAATCATAACCCGTCGAGTACTCCATTCCCATGTATGCT
 
. : . : . : . : . : . :
rJMFF013O03- CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
rJMFF019E05- CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
rJMFF011A07- CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
rJMFF032F11- CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
                      ____________________________________________________________
consensus CGTCCAGTTTGTTGATGAGCCATCATCTCGAGCTCACCAGAATAGTGACTATCAGGAAGG
 
. : . : . : . : . : . :
rJMFF013O03- ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
rJMFF019E05- ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
rJMFF011A07- ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
rJMFF032F11- ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
                      ____________________________________________________________
consensus ATCTTATCTGAGCTGGTAGTGGCTTGATTGCCTTTAAAACCCCATGGACTTGAAGAAAAT
 
. : . : . : . : . : . :
rJMFF013O03- TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
rJMFF019E05- TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
rJMFF011A07- TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
rJMFF032F11- TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
                      ____________________________________________________________
consensus TCATTGATAACGGCAGCATGGGAACCGGATGGATGAACAGCAAGCGTTCCATCAGTGTTA
 
. : . : . : . : . : . :
rJMFF013O03- AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
rJMFF019E05- AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
rJMFF011A07- AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
rJMFF032F11- AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
                      ____________________________________________________________
consensus AGTAAGCTATTAACCCCGAGACCAGAGGGTTGTTGGTTTCTCGAGCCCCAGGGCTGATTT
 
. : . : . : . : . : . :
rJMFF013O03- GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
rJMFF019E05- GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
rJMFF011A07- GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
rJMFF032F11- GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
                      ____________________________________________________________
consensus GAGTTTGACAGAAGAGAGAGAGCACGGGTGGAATCCGAGACCCCATTGAAGTATTCTCCA
 
. : . : . : . : . : . :
rJMFF013O03- CAAGGACTGGGATAAGTAGCCCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
rJMFF019E05- CAAGGACTGGGATAAGTAGCCCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
rJMFF011A07- CAAGGACTGGGATAAGTAG-CCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
rJMFF032F11- CAAGGACTGGGATAAGTAGCCCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
                      ____________________________________________________________
consensus CAAGGACTGGGATAAGTAGCCCTAGCAGCAGCATCCGAACCTAGCAAAAGAAGCTTGGGT
 
. : . : . : . : . : . :
rJMFF013O03- GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
rJMFF019E05- GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
rJMFF011A07- GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
rJMFF032F11- GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
                      ____________________________________________________________
consensus GGGGGATCTTCAGAGTTTCTCTGCCATGGTTGTTGAAGAAAGTTCCCCACGCCATTGGTA
 
. : . : . : . : . : . :
rJMFF013O03- CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
rJMFF019E05- CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
rJMFF011A07- CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
rJMFF032F11- CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
JMFF019E05+ CCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
JMFF013O03+ CATCACAAAG
                      ____________________________________________________________
consensus CTTGGCCGCCATGAGCCCTTACCACCCGGATATGGGTATGAGGCGAAATCCATCACAAAG
 
. : . : . : . : . : . :
rJMFF013O03- TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATATGGGA
rJMFF019E05- TGGCCATTGTTTCCAAACATTGAAGA
rJMFF011A07- TGGCCATTGTTT
rJMFF032F11- TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
JMFF019E05+ TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
JMFF032F11+ AGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
JMFF013O03+ TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
                      ____________________________________________________________
consensus TGGCCATTGTTTCCAAACATTGAAGAAGAAAGAGTCCCATAATGTGTGGACAATAT-GGA
 
. : . : . : . : . : . :
rJMFF013O03- TCCAAGTGGGGGCTTCCTACGACGCTCATT
rJMFF032F11- TCCAAGTGGGGGCTTCCTACGACGCTCATTATGACCA
JMFF019E05+ TCCAAGTGGGGGCTTCCTACGACGCTCATTATGACCAGCCAAACGCCTACGGCAGCTCCT
JMFF032F11+ TCCAAGTGGGGGCTTCTTACGACGCTCATTATGACCAGCCAAACGCCTACGGCAGCTCCT
JMFF013O03+ TCCAAGTGGGGGCTTCNTACGACGCTCATTATGACCAGCCAAACGCCTACGGCAGCTCCT
                      ____________________________________________________________
consensus TCCAAGTGGGGGCTTCCTACGACGCTCATTATGACCAGCCAAACGCCTACGGCAGCTCCT
 
. : . : . : . : . : . :
JMFF019E05+ TTTTACTTGATCAAATTCACTCAATTGATGAAACCTGCTGCACTGCTGGCAGAATCTCTG
JMFF032F11+ TTTTACTTGATCAAATTCACTCAATTGATGAAACCTGCTGCACTGCTGGCAGAATCTCTG
JMFF011A07+ TGCTGCACTACTGGCAGAATCTCTG
JMFF013O03+ TTTTACTTGATCAAATTCACTCAATTGATGAAACCTGCTGCACTGCTGGCAGAATCTCTG
                      ____________________________________________________________
consensus TTTTACTTGATCAAATTCACTCAATTGATGAAACCTGCTGCACTGCTGGCAGAATCTCTG
 
. : . : . : . : . : . :
JMFF019E05+ TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
JMFF032F11+ TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
JMFF011A07+ TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
JMFF013O03+ TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
                      ____________________________________________________________
consensus TTCAAGCCCAGAAACAATGACCTTAGGAGACTTGGAGTGCATACCACAAACTTTATGCTT
 
. : . : . : . : . : . :
JMFF019E05+ TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
JMFF032F11+ TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
JMFF011A07+ TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
JMFF013O03+ TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
                      ____________________________________________________________
consensus TGAGTAATAAGCCTTAAATTCACTCAGATCTGCCTTGCACCCTTCCACCTGGCACCTGGG
 
. : . : . : . : . : . :
JMFF019E05+ TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCACC
JMFF032F11+ TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCACC
JMFF011A07+ TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCTCC
JMFF013O03+ TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCACC
                      ____________________________________________________________
consensus TGGCTGTCCGCCTTGCGCCACCGCGCTCCTCCCTCTCTTGGCCGGCAGCGACGACCCACC
 
. : . : . : . : . : . :
JMFF019E05+ ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
JMFF032F11+ ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
JMFF011A07+ ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
JMFF013O03+ ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
                      ____________________________________________________________
consensus ACTCCCACCACCCGCATCTTCAAAGTAGACTTTTTTGCCGAACTTCAAGCCGTCGGATGA
 
. : . : . : . : . : . :
JMFF019E05+ GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
JMFF032F11+ GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
JMFF011A07+ GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
JMFF013O03+ GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
                      ____________________________________________________________
consensus GGAGTCGGCGGAGGTAGAGGTAGAAGAAGAAGAAGAACCCAGTTCCATTTTCCAGTTGCA
 
. : . : . : . : . : . :
JMFF019E05+ GAGCCCATTC
JMFF032F11+ TAGCCCATTCACCACATCTTTTTTGGGTCAAATCATTGAAATGCAGAACACTGACAC
JMFF011A07+ GAGCCCATTCACCACATCTTTTTTGGGTCAAATCATTGAAATGCAGAACACTGACAC
JMFF013O03+ TAGCCCATTCACCACATCTTTTTTGGGTCAAATCATTGAAATGCAGAACACTGACACTGT
                      ____________________________________________________________
consensus TAGCCCATTCACCACATCTTTTTTGGGTCAAATCATTGAAATGCAGAACACTGACACTGT