| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011I05 | Sequence | 608 | 004508 (7) | ref|XP_009620036.1| | 2e-105 | PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596 | |||||
| JMFF013B08 | Sequence | 126 | 004508 (7) | ||||||||
| JMFF013B24 | Sequence | 477 | 004508 (7) | ref|XP_009620036.1| | 4e-72 | PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596 | 681 | 004508 (7) | ref|XP_009620036.1| | 1e-98 | PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596 |
| JMFF026K18 | Sequence | 522 | 004508 (7) | ref|XP_009620036.1| | 2e-84 | PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596 | |||||
| JMSF002J17 | Sequence | 357 | 004508 (7) | ref|XP_009620036.1| | 3e-42 | PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596 | 746 | 004508 (7) | ref|XP_009620036.1| | 7e-129 | PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596 |
This contig is upended
. : . : . : . : . : . :
rJMFF013B24- ATCTCTATTATCACTTGATAATATCCAGTTCAGTAGTCCATTCTCTAA
rJMSF002J17- TAGTCCATTCTCTAA
____________________________________________________________
consensus ATCTCTATTATCACTTGATAATATCCAGTTCAGTAGTCCATTCTCTAA
. : . : . : . : . : . :
rJMFF013B24- TTTAATGAATAAAGAGAGTATCTTCAAGGATTTATAAAAAAAAAATATCTCAAAATAACC
rJMSF002J17- TTTAATGAATAAAGAGAGTATCTTCAAGGATTTAT-AAAAAAAAATATCTCAAAATAACC
____________________________________________________________
consensus TTTAATGAATAAAGAGAGTATCTTCAAGGATTTATAAAAAAAAAATATCTCAAAATAACC
. : . : . : . : . : . :
rJMFF013B24- AACTTAATCAAGCAAAACAAAATTTANACACTAAAGCACTTGCCACAACAAGTAACAAAA
rJMSF002J17- AACTTAATCAAGCAAAACAAAATTTAGACACTAAAGCACTTGCCACAACAAGTAACAAAA
____________________________________________________________
consensus AACTTAATCAAGCAAAACAAAATTTAGACACTAAAGCACTTGCCACAACAAGTAACAAAA
. : . : . : . : . : . :
rJMFF013B24- AAGTATAAATATTTCAAATAAAGTCCTGGATTATGCATGANAACAACTCTTCAACGGTTG
rJMSF002J17- AAGTATAAATATTTCAAATAAAGTCCTGGATTATGCATGAGAACAACTCTTCAACGGTTG
____________________________________________________________
consensus AAGTATAAATATTTCAAATAAAGTCCTGGATTATGCATGAGAACAACTCTTCAACGGTTG
. : . : . : . : . : . :
rJMFF013B24- GCCTTGGCAACTCTCTCAATCTCATCCTTCTTCTTAATTGCGTAACTGTTGGAANACCCC
rJMSF002J17- GCCTTGGCAACTCTCTCAATCTCATCCTTCTTCTTAATTGCGTAACTGTTGGAAGACCCC
____________________________________________________________
consensus GCCTTGGCAACTCTCTCAATCTCATCCTTCTTCTTAATTGCGTAACTGTTGGAAGACCCC
. : . : . : . : . : . :
rJMFF013B24- TTGGCAGCATTAATGAGTTCATCTGCAAGGCACTCAGCAATGGTCTTGATGTTCCTGAAA
rJMSF002J17- TTGGCAGCATTAATGAGTTCATCTGCAAGGCACTCAGCAATGGTCTTGATGTTCCTGAAA
JMFF011I05+ GTTCCTGAAA
____________________________________________________________
consensus TTGGCAGCATTAATGAGTTCATCTGCAAGGCACTCAGCAATGGTCTTGATGTTCCTGAAA
. : . : . : . : . : . :
rJMFF013B24- GCACTCTGGCGGGCACCACTTGTTATGAGGTANATTGCTTGGTTCACACGACGGANAGGA
rJMSF002J17- GCACTCTGGCGGGCACCACTTGTTATGAGGTAGATTGCTTGGTTCACACGACGGAGAGGA
JMFF011I05+ GCACTCTGGCGGGCACCACTTGTTATGAGGTAGATTGCTTGGTTCACACGACGGAGAGGA
____________________________________________________________
consensus GCACTCTGGCGGGCACCACTTGTTATGAGGTAGATTGCTTGGTTCACACGACGGAGAGGA
. : . : . : . : . : . :
rJMFF013B24- GAAATATCAACAGCCTGACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
rJMSF002J17- GAAATATCAACAGCCTGACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
JMFF026K18+ GACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
JMFF011I05+ GAAATATCAACAGCCTGACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
____________________________________________________________
consensus GAAATATCAACAGCCTGACGTCTCACAACACCAGCAGAACCAATTCGAGTAGCATCTTCT
. : . : . : . : . : . :
rJMFF013B24- CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
rJMSF002J17- CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
JMFF026K18+ CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
JMFF011I05+ CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
JMFF013B24+ GGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
____________________________________________________________
consensus CTTGGGCCACTATTGATCACAGCATCAACAATCACTTGAATAGGATTTAGGTCTGTCAAC
. : . : . : . : . : . :
rJMFF013B24- AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
rJMSF002J17- AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
JMFF026K18+ AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
JMFF011I05+ AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
JMFF013B24+ AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
____________________________________________________________
consensus AAATGAATGATTTCCATAGCATGCTTAACAATTCGAACTGCCATAAGCTTCTTCCCATTG
. : . : . : . : . : . :
rJMFF013B24- TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
rJMSF002J17- TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
JMFF026K18+ TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
JMFF011I05+ TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
JMSF002J17+ CCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
JMFF013B24+ TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
____________________________________________________________
consensus TTCCTTCCATGCATCATCAGTGAATTGACCAACCTCTCCACGACAGGGCACTGGGCCTTC
. : . : . : . : . : . :
rJMFF013B24- CTGAACCTTTTGGCTTGGTACCGACCTGCAGTG
rJMSF002J17- CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
JMFF026K18+ CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
JMFF011I05+ CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
JMSF002J17+ CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
JMFF013B24+ CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
____________________________________________________________
consensus CTGAACCTTTTGGCTTGGTACCGACCTGCAGTGTGTGGTGTGTAGGTAGGATGCTTGGCT
. : . : . : . : . : . :
rJMSF002J17- GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
JMFF026K18+ GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
JMFF011I05+ GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
JMSF002J17+ GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
JMFF013B24+ GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
____________________________________________________________
consensus GCAGTGGCAGTGATATAATCATCGACAGACAAGTCATTAACCTGAACATCATCGTAAGAC
. : . : . : . : . : . :
rJMSF002J17- CAACGGTTGAAG
JMFF026K18+ CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
JMFF011I05+ CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
JMSF002J17+ CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
JMFF013B08+ CTTTGA
JMFF013B24+ CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
____________________________________________________________
consensus CAACGGTTGAAGAGCAGGATACCACTGTGAACCTTCTCTTCTTGCGGATTCACACTTTGA
. : . : . : . : . : . :
JMFF026K18+ GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
JMFF011I05+ GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
JMSF002J17+ GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
JMFF013B08+ GCCTTCTCCTCTTGCGGANTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
JMFF013B24+ GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
____________________________________________________________
consensus GCCTTCTCCTCTTGCGGATTCACACTGTGTACTGCTACCGCTCCTTCCATCTTTGCTTCA
. : . : . : . : . : . :
JMFF026K18+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACG
JMFF011I05+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACG
JMSF002J17+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACG
JMFF013B08+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACG
JMFF013B24+ CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACGCAG
____________________________________________________________
consensus CCGTCGCGATTGCTTTCTCGCACAATCCCTCTCCCGGCAGCTGAAATGCAGAAAACGCAG