Contig 004485:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010C02Sequence568004485 (6)emb|CBI18223.3|5e-72unnamed protein product [Vitis vinifera]776005425 (6)emb|CDO97512.1|5e-140unnamed protein product [Coffea canephora]
JMFF025F16Sequence537004485 (6)emb|CBI18223.3|4e-76unnamed protein product [Vitis vinifera]832005425 (6)emb|CDO97512.1|4e-151unnamed protein product [Coffea canephora]
JMFF033F15Sequence598004485 (6)emb|CBI18223.3|5e-82unnamed protein product [Vitis vinifera]775005425 (6)ref|XP_009786904.1|2e-141PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris]
JMFF041G20Sequence629004485 (6)ref|XP_009786904.1|2e-101PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris]579005425 (6)ref|XP_010912010.1|2e-97PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis]
JMSF013F22Sequence215004485 (6)emb|CDY03839.1|8e-27BnaC01g29560D [Brassica napus]760005425 (6)emb|CDO97512.1|8e-141unnamed protein product [Coffea canephora]
JMSF017C17Sequence462004485 (6)ref|XP_010087922.1|3e-5760S ribosomal protein L3 [Morus notabilis] gb|EXB30757.1| 60S ribosomal protein 773005425 (6)emb|CDO97512.1|4e-135unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF041G20+ GCAATTGTCCCACCATTAACCTGG
                      ____________________________________________________________
consensus GCAATTGTCCCACCATTAACCTGG
 
. : . : . : . : . : . :
JMFF041G20+ ATCTCCATCAAATGAGCCTTCTTCTGCTTCAGCCCCTTCATTTTCCTTATCTGGGTGTGA
JMFF025F16+ TGTGA
JMFF033F15+ CTCCATCAAATGAGCCTTCTTCTGCTTCAGCCCCTTCATTTTCCTTATCTGGGTGTGA
JMFF010C02+ CCCCTTCATTTTCCTTATNTGGGTGTGA
                      ____________________________________________________________
consensus ATCTCCATCAAATGAGCCTTCTTCTGCTTCAGCCCCTTCATTTTCCTTATCTGGGTGTGA
 
. : . : . : . : . : . :
JMFF041G20+ GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
JMFF025F16+ GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
JMFF033F15+ GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
JMFF010C02+ GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
                      ____________________________________________________________
consensus GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
 
. : . : . : . : . : . :
JMFF041G20+ TTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
JMFF025F16+ TTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
JMSF017C17+ GATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
JMFF033F15+ TTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
JMFF010C02+ CTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
                      ____________________________________________________________
consensus TTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
 
. : . : . : . : . : . :
JMFF041G20+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
JMFF025F16+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
JMSF017C17+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
JMFF033F15+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
JMFF010C02+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
                      ____________________________________________________________
consensus TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
 
. : . : . : . : . : . :
JMFF041G20+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAAC-AATTAC
JMFF025F16+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAAC-AATTAC
JMSF017C17+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAAC-AATTAC
JMFF033F15+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAACAAATTAC
JMFF010C02+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAACCAATTAC
                      ____________________________________________________________
consensus GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAAC-AATTAC
 
. : . : . : . : . : . :
JMFF041G20+ AATTGGAGGTGCCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
JMFF025F16+ AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
JMSF017C17+ AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
JMFF033F15+ AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
JMFF010C02+ AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
                      ____________________________________________________________
consensus AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
 
. : . : . : . : . : . :
JMFF041G20+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
JMFF025F16+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGA
JMSF017C17+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATCCCAGCTTTGTACCCCAAGAATGC
JMFF033F15+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
JMSF013F22+ CAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
JMFF010C02+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
                      ____________________________________________________________
consensus TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
 
. : . : . : . : . : . :
JMFF041G20+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
JMFF025F16+ AGTCAGCCTGCATGGTTTGGAGGCATCATCATTGGGAAATGCTTTCACCTTTCCCCTTTG
JMSF017C17+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
JMFF033F15+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
JMSF013F22+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
JMFF010C02+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
                      ____________________________________________________________
consensus AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
 
. : . : . : . : . : . :
JMFF041G20+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMFF025F16+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMSF017C17+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMFF033F15+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMSF013F22+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMFF010C02+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
                      ____________________________________________________________
consensus GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
 
. : . : . : . : . : . :
JMFF041G20+ CCTGTGCGACATCCTTC
JMFF025F16+ CCTGTGCGACATCCTTCTCCTCCTCCAAACC
JMSF017C17+ CCTGTGCGACATCCTTCTCCTCCTCCAAACC
JMFF033F15+ CCTGTGCGACATCCTTCTCCTCCTCCAAACC
JMSF013F22+ CCTGTGCGACATCCTTCTCCTCCTCCAAACC
JMFF010C02+ CCTGTGCGACATCCTTCTCCTCCTCCAAACCTAGGGAGCTTCAAGCTTCACTCAACTAGG
                      ____________________________________________________________
consensus CCTGTGCGACATCCTTCTCCTCCTCCAAACCTAGGGAGCTTCAAGCTTCACTCAACTAGG