| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010C02 | Sequence | 568 | 004485 (6) | emb|CBI18223.3| | 5e-72 | unnamed protein product [Vitis vinifera] | 776 | 005425 (6) | emb|CDO97512.1| | 5e-140 | unnamed protein product [Coffea canephora] |
| JMFF025F16 | Sequence | 537 | 004485 (6) | emb|CBI18223.3| | 4e-76 | unnamed protein product [Vitis vinifera] | 832 | 005425 (6) | emb|CDO97512.1| | 4e-151 | unnamed protein product [Coffea canephora] |
| JMFF033F15 | Sequence | 598 | 004485 (6) | emb|CBI18223.3| | 5e-82 | unnamed protein product [Vitis vinifera] | 775 | 005425 (6) | ref|XP_009786904.1| | 2e-141 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] |
| JMFF041G20 | Sequence | 629 | 004485 (6) | ref|XP_009786904.1| | 2e-101 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] | 579 | 005425 (6) | ref|XP_010912010.1| | 2e-97 | PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis] |
| JMSF013F22 | Sequence | 215 | 004485 (6) | emb|CDY03839.1| | 8e-27 | BnaC01g29560D [Brassica napus] | 760 | 005425 (6) | emb|CDO97512.1| | 8e-141 | unnamed protein product [Coffea canephora] |
| JMSF017C17 | Sequence | 462 | 004485 (6) | ref|XP_010087922.1| | 3e-57 | 60S ribosomal protein L3 [Morus notabilis] gb|EXB30757.1| 60S ribosomal protein | 773 | 005425 (6) | emb|CDO97512.1| | 4e-135 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFF041G20+ GCAATTGTCCCACCATTAACCTGG
____________________________________________________________
consensus GCAATTGTCCCACCATTAACCTGG
. : . : . : . : . : . :
JMFF041G20+ ATCTCCATCAAATGAGCCTTCTTCTGCTTCAGCCCCTTCATTTTCCTTATCTGGGTGTGA
JMFF025F16+ TGTGA
JMFF033F15+ CTCCATCAAATGAGCCTTCTTCTGCTTCAGCCCCTTCATTTTCCTTATCTGGGTGTGA
JMFF010C02+ CCCCTTCATTTTCCTTATNTGGGTGTGA
____________________________________________________________
consensus ATCTCCATCAAATGAGCCTTCTTCTGCTTCAGCCCCTTCATTTTCCTTATCTGGGTGTGA
. : . : . : . : . : . :
JMFF041G20+ GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
JMFF025F16+ GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
JMFF033F15+ GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
JMFF010C02+ GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
____________________________________________________________
consensus GCCAACACACGAATGACACATGCATATTTCTTCATCTTCTCAAGCTGTGTTTCAATATCC
. : . : . : . : . : . :
JMFF041G20+ TTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
JMFF025F16+ TTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
JMSF017C17+ GATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
JMFF033F15+ TTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
JMFF010C02+ CTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
____________________________________________________________
consensus TTCTTACCATCCTCAGATTCATATTTCTTTGAATACTTGACAAAAGCCTTTTTCTTGGAC
. : . : . : . : . : . :
JMFF041G20+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
JMFF025F16+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
JMSF017C17+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
JMFF033F15+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
JMFF010C02+ TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
____________________________________________________________
consensus TTGCACCAGTTCTTGTAAAATCTCCTTCTCACCTCCTCACTCAGATGCTGAGCCCAAACT
. : . : . : . : . : . :
JMFF041G20+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAAC-AATTAC
JMFF025F16+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAAC-AATTAC
JMSF017C17+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAAC-AATTAC
JMFF033F15+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAACAAATTAC
JMFF010C02+ GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAACCAATTAC
____________________________________________________________
consensus GTGTTGAGGCAACGAAGGCCACGAGGTGTCTTCACATAGCCAACAACTCCAAC-AATTAC
. : . : . : . : . : . :
JMFF041G20+ AATTGGAGGTGCCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
JMFF025F16+ AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
JMSF017C17+ AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
JMFF033F15+ AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
JMFF010C02+ AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
____________________________________________________________
consensus AATTGGAGGTGTCTCAACGATTGTCACAGCCTCACAGGTCTCCTTCTTGTGAAGTTTGGA
. : . : . : . : . : . :
JMFF041G20+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
JMFF025F16+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGA
JMSF017C17+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATCCCAGCTTTGTACCCCAAGAATGC
JMFF033F15+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
JMSF013F22+ CAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
JMFF010C02+ TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
____________________________________________________________
consensus TCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATTCCAGCTTTGTACCCCAAGAATGC
. : . : . : . : . : . :
JMFF041G20+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
JMFF025F16+ AGTCAGCCTGCATGGTTTGGAGGCATCATCATTGGGAAATGCTTTCACCTTTCCCCTTTG
JMSF017C17+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
JMFF033F15+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
JMSF013F22+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
JMFF010C02+ AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
____________________________________________________________
consensus AGTCAGCCTGCATGGTTTGGAGGCATCATCCTTGGGAAATGCTTTCACCTTTCCCCTTTG
. : . : . : . : . : . :
JMFF041G20+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMFF025F16+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMSF017C17+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMFF033F15+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMSF013F22+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
JMFF010C02+ GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
____________________________________________________________
consensus GCGAGAAGCACGCTTTCTGGGAAGAAAGCCGAGTGAGCCATGCCTTGGGTGCTCAAACTT
. : . : . : . : . : . :
JMFF041G20+ CCTGTGCGACATCCTTC
JMFF025F16+ CCTGTGCGACATCCTTCTCCTCCTCCAAACC
JMSF017C17+ CCTGTGCGACATCCTTCTCCTCCTCCAAACC
JMFF033F15+ CCTGTGCGACATCCTTCTCCTCCTCCAAACC
JMSF013F22+ CCTGTGCGACATCCTTCTCCTCCTCCAAACC
JMFF010C02+ CCTGTGCGACATCCTTCTCCTCCTCCAAACCTAGGGAGCTTCAAGCTTCACTCAACTAGG
____________________________________________________________
consensus CCTGTGCGACATCCTTCTCCTCCTCCAAACCTAGGGAGCTTCAAGCTTCACTCAACTAGG