Contig 004484:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009P22Sequence583004484 (2)ref|XP_010257131.1|7e-71PREDICTED: cullin-3A-like [Nelumbo nucifera]767009819 (3)ref|XP_010257125.1|2e-116PREDICTED: cullin-3A-like isoform X2 [Nelumbo nucifera]
JMFS016G01Sequence579004484 (2)ref|XP_008230980.1|3e-16PREDICTED: cullin-3B-like [Prunus mume]

Alignment

This contig is upended


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JMFS016G01+                                                                   TAAG
                      ____________________________________________________________
consensus                                                                     TAAG
 
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JMFS016G01+           TGAAATTAAGCTCTCTCTTCTTTTTTTTTTTTTCAAAAGCACATGATTGTTATCCAAATA
                      ____________________________________________________________
consensus             TGAAATTAAGCTCTCTCTTCTTTTTTTTTTTTTCAAAAGCACATGATTGTTATCCAAATA
 
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JMFS016G01+           AAAAGGGGGACCTCATTTCTTCAAATCCATCGTTCAGAATTCCAAGTTGTAGCAGCATCA
                      ____________________________________________________________
consensus             AAAAGGGGGACCTCATTTCTTCAAATCCATCGTTCAGAATTCCAAGTTGTAGCAGCATCA
 
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JMFS016G01+           AATTTCATGTGTTTACCATTCTTGGATATCAAAATCAGATACAGAACAAGTATAAAGTGT
                      ____________________________________________________________
consensus             AATTTCATGTGTTTACCATTCTTGGATATCAAAATCAGATACAGAACAAGTATAAAGTGT
 
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JMFS016G01+           ATAGGCAAATGAGTTAAACGAAAAAGCACTCCAAACCTATAGAGCTCTTCAAAACTAAGG
JMFF009P22+                                              CCTATAGAGCTCTTCAAAACTAAGG
                      ____________________________________________________________
consensus             ATAGGCAAATGAGTTAAACGAAAAAGCACTCCAAACCTATAGAGCTCTTCAAAACTAAGG
 
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JMFS016G01+           CCACTGGCGTTATGATTGTAAATCTCGTGAATCGCATGTTCAATGATATTCCAGGTCTTC
JMFF009P22+           CCACTGGCGTTATGATTGTAAATCTCGTGAATCGCATGTTCAATGATATTCCAGGTCTTC
                      ____________________________________________________________
consensus             CCACTGGCGTTATGATTGTAAATCTCGTGAATCGCATGTTCAATGATATTCCAGGTCTTC
 
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JMFS016G01+           TCTGCAACTCACAGTATCAACCACGACCCGATGCTTAAACGCCTCTATCTGAAAATTCCT
JMFF009P22+           TCTGCATATTTCGG-ATCAACCACGACCCGATGCTTAAACGCCTCTATCTGAAAATTCCT
                      ____________________________________________________________
consensus             TCTGCATCTTTCGGTATCAACCACGACCCGATGCTTAAACGCCTCTATCTGAAAATTCCT
 
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JMFS016G01+           CTTCTTCGGCGCACTCATTTCTCGCTTAAACTGTCCACCGCTTCGGAACCCGACTCCTCG
JMFF009P22+           CTTCTTCGGCGCACTCATTTCTCGCTTAAACTGTCCACCGCTTCGGAACCCGACTCCTCG
                      ____________________________________________________________
consensus             CTTCTTCGGCGCACTCATTTCTCGCTTAAACTGTCCACCGCTTCGGAACCCGACTCCTCG
 
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JMFS016G01+           GCCGTGCCCGCACCCGTGACTCCAGAACTCAAATCTCACCGACGGGTAACTATCGATCTG
JMFF009P22+           GCCGTGCCCGCACCCGTGACTCCAGAACTCAAATCTCACCGACGGGTAACTATCGATCTG
                      ____________________________________________________________
consensus             GCCGTGCCCGCACCCGTGACTCCAGAACTCAAATCTCACCGACGGGTAACTATCGATCTG
 
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JMFS016G01+           ATATATACAAGCTAGGGTTTTTCTTTGTGAAAAGCAAATCAGAAGCTCCCAAATCGACTA
JMFF009P22+           ATATATACAAGCTAGGGTTTTTCTTTGTGAAAAGCAAATCAGAAGCTCCCAAATCGACTA
                      ____________________________________________________________
consensus             ATATATACAAGCTAGGGTTTTTCTTTGTGAAAAGCAAATCAGAAGCTCCCAAATCGACTA
 
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JMFS016G01+           ATCGGTTAGGGTTGAGAGTTTCGTTTACGCAGCAA                         
JMFF009P22+           ATCGGTTAGGGTTGAGAGTTTCGTTTACGCAGCAATCACCTATACTGTGTTGAAGGACTT
                      ____________________________________________________________
consensus             ATCGGTTAGGGTTGAGAGTTTCGTTTACGCAGCAATCACCTATACTGTGTTGAAGGACTT