Contig 004484:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009P22Sequence583004484 (2)ref|XP_010257131.1|7e-71PREDICTED: cullin-3A-like [Nelumbo nucifera]767009819 (3)ref|XP_010257125.1|2e-116PREDICTED: cullin-3A-like isoform X2 [Nelumbo nucifera]
JMFS016G01Sequence579004484 (2)ref|XP_008230980.1|3e-16PREDICTED: cullin-3B-like [Prunus mume]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS016G01+ TAAG
                      ____________________________________________________________
consensus TAAG
 
. : . : . : . : . : . :
JMFS016G01+ TGAAATTAAGCTCTCTCTTCTTTTTTTTTTTTTCAAAAGCACATGATTGTTATCCAAATA
                      ____________________________________________________________
consensus TGAAATTAAGCTCTCTCTTCTTTTTTTTTTTTTCAAAAGCACATGATTGTTATCCAAATA
 
. : . : . : . : . : . :
JMFS016G01+ AAAAGGGGGACCTCATTTCTTCAAATCCATCGTTCAGAATTCCAAGTTGTAGCAGCATCA
                      ____________________________________________________________
consensus AAAAGGGGGACCTCATTTCTTCAAATCCATCGTTCAGAATTCCAAGTTGTAGCAGCATCA
 
. : . : . : . : . : . :
JMFS016G01+ AATTTCATGTGTTTACCATTCTTGGATATCAAAATCAGATACAGAACAAGTATAAAGTGT
                      ____________________________________________________________
consensus AATTTCATGTGTTTACCATTCTTGGATATCAAAATCAGATACAGAACAAGTATAAAGTGT
 
. : . : . : . : . : . :
JMFS016G01+ ATAGGCAAATGAGTTAAACGAAAAAGCACTCCAAACCTATAGAGCTCTTCAAAACTAAGG
JMFF009P22+ CCTATAGAGCTCTTCAAAACTAAGG
                      ____________________________________________________________
consensus ATAGGCAAATGAGTTAAACGAAAAAGCACTCCAAACCTATAGAGCTCTTCAAAACTAAGG
 
. : . : . : . : . : . :
JMFS016G01+ CCACTGGCGTTATGATTGTAAATCTCGTGAATCGCATGTTCAATGATATTCCAGGTCTTC
JMFF009P22+ CCACTGGCGTTATGATTGTAAATCTCGTGAATCGCATGTTCAATGATATTCCAGGTCTTC
                      ____________________________________________________________
consensus CCACTGGCGTTATGATTGTAAATCTCGTGAATCGCATGTTCAATGATATTCCAGGTCTTC
 
. : . : . : . : . : . :
JMFS016G01+ TCTGCAACTCACAGTATCAACCACGACCCGATGCTTAAACGCCTCTATCTGAAAATTCCT
JMFF009P22+ TCTGCATATTTCGG-ATCAACCACGACCCGATGCTTAAACGCCTCTATCTGAAAATTCCT
                      ____________________________________________________________
consensus TCTGCATCTTTCGGTATCAACCACGACCCGATGCTTAAACGCCTCTATCTGAAAATTCCT
 
. : . : . : . : . : . :
JMFS016G01+ CTTCTTCGGCGCACTCATTTCTCGCTTAAACTGTCCACCGCTTCGGAACCCGACTCCTCG
JMFF009P22+ CTTCTTCGGCGCACTCATTTCTCGCTTAAACTGTCCACCGCTTCGGAACCCGACTCCTCG
                      ____________________________________________________________
consensus CTTCTTCGGCGCACTCATTTCTCGCTTAAACTGTCCACCGCTTCGGAACCCGACTCCTCG
 
. : . : . : . : . : . :
JMFS016G01+ GCCGTGCCCGCACCCGTGACTCCAGAACTCAAATCTCACCGACGGGTAACTATCGATCTG
JMFF009P22+ GCCGTGCCCGCACCCGTGACTCCAGAACTCAAATCTCACCGACGGGTAACTATCGATCTG
                      ____________________________________________________________
consensus GCCGTGCCCGCACCCGTGACTCCAGAACTCAAATCTCACCGACGGGTAACTATCGATCTG
 
. : . : . : . : . : . :
JMFS016G01+ ATATATACAAGCTAGGGTTTTTCTTTGTGAAAAGCAAATCAGAAGCTCCCAAATCGACTA
JMFF009P22+ ATATATACAAGCTAGGGTTTTTCTTTGTGAAAAGCAAATCAGAAGCTCCCAAATCGACTA
                      ____________________________________________________________
consensus ATATATACAAGCTAGGGTTTTTCTTTGTGAAAAGCAAATCAGAAGCTCCCAAATCGACTA
 
. : . : . : . : . : . :
JMFS016G01+ ATCGGTTAGGGTTGAGAGTTTCGTTTACGCAGCAA
JMFF009P22+ ATCGGTTAGGGTTGAGAGTTTCGTTTACGCAGCAATCACCTATACTGTGTTGAAGGACTT
                      ____________________________________________________________
consensus ATCGGTTAGGGTTGAGAGTTTCGTTTACGCAGCAATCACCTATACTGTGTTGAAGGACTT