Contig 004479:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009B21Sequence478004479 (2)ref|XP_006426527.1|4e-45hypothetical protein CICLE_v10025421mg [Citrus clementina] gb|ESR39767.1| hypoth696013678 (2)gb|AAG51573.1|AC027034_191e-60RNA helicase, 5' partial; 101954-101280 [Arabidopsis thaliana]
JMFF017A17Sequence478004479 (2)ref|XP_006426527.1|4e-46hypothetical protein CICLE_v10025421mg [Citrus clementina] gb|ESR39767.1| hypoth819013678 (2)gb|EPS60527.1|5e-87hypothetical protein M569_14276, partial [Genlisea aurea]

Alignment

This contig is upended


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JMFF017A17+             TTGAATAGGTGTAGGCTCAGTAAAGCCAGCCTTCTCAATTTCTTTCATAACATATTCT
JMFF009B21+             TTGAATAGGTGTAGGCTCAGTAAAGCCAGCCTTCTCAATTTCTTTCATAACATATTCT
                      ____________________________________________________________
consensus               TTGAATAGGTGTAGGCTCAGTAAAGCCAGCCTTCTCAATTTCTTTCATAACATATTCT
 
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JMFF017A17+           GGAAACCCCACGTCACTGAAGCTCTTCACAGGCTTCGGCACATCACGGCCTTCTACCGTT
JMFF009B21+           GGAAACCCCACGTCACTGAAGCTCTTCACAGGCTTCGGCACATCACGGCCTTCTACCGTT
                      ____________________________________________________________
consensus             GGAAACCCCACGTCACTGAAGCTCTTCACAGGCTTCGGCACATCACGGCCTTCTACCGTT
 
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JMFF017A17+           ATCTCCCGTCGCAGCCTATATTCCTCCACCTCGCTGTCCGTCATTGCCGCAACTGACCGT
JMFF009B21+           ATCTCCCGTCGCAGCCTATATTCCTCCACCTCGCTGTCCGTCATTGCCGCAACTGACCGT
                      ____________________________________________________________
consensus             ATCTCCCGTCGCAGCCTATATTCCTCCACCTCGCTGTCCGTCATTGCCGCAACTGACCGT
 
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JMFF017A17+           GACTCGACATAGAAATTCTTCTCAAACGGGGTCAACCCGTCTAAATCCAATTTCCGAGGC
JMFF009B21+           GACTCGACATAGAAATTCTTCTCAAACGGGGTCAACCCGTCTAAATCCAATTTCCGAGGC
                      ____________________________________________________________
consensus             GACTCGACATAGAAATTCTTCTCAAACGGGGTCAACCCGTCTAAATCCAATTTCCGAGGC
 
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JMFF017A17+           GACTCACTGCCCTCATAGTCTTTCCTACTTGCTGAAGATGACCGGTATGTCGATCCACCG
JMFF009B21+           GACTCACTGCCCTCATAGTCTTTCCTACTTGCTGAAGATGACCGGTATGTCGATCCACCG
                      ____________________________________________________________
consensus             GACTCACTGCCCTCATAGTCTTTCCTACTTGCTGAAGATGACCGGTATGTCGATCCACCG
 
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JMFF017A17+           CCAAAGCCAGAGTCGCTTCGTCGGTCTCGATACGACCCGGGGTCCGCCGCGCGGCTATCG
JMFF009B21+           CCAAAGCCAGAGTCGCTTCGTCGGTCTCGATACGACCCGGGGTCCGCCGCGCGGCTATCG
                      ____________________________________________________________
consensus             CCAAAGCCAGAGTCGCTTCGTCGGTCTCGATACGACCCGGGGTCCGCCGCGCGGCTATCG
 
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JMFF017A17+           TATCTACTCATTGAACGTATTGTTGACTGCAAGCTCTGGAGAAGTTCCGGCGAGGGATAT
JMFF009B21+           TAGCTACTCATTGAACGTATTGTTGACTGCAAGCTCTGGAGAAGTTCCGGCGAGGGATAT
                      ____________________________________________________________
consensus             TATCTACTCATTGAACGTATTGTTGACTGCAAGCTCTGGAGAAGTTCCGGCGAGGGATAT
 
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JMFF017A17+           CGATGGTTTAAAGAGATGGCTCTTTTAATCCGTGTACTACGGTCGCCCCGGCAGTGAGCT
JMFF009B21+           CGATGGTTTAAAGAGATGGCTCTTTTAATCCGTGTACTACGGTCGCCCCGGCAGTGAGCT
                      ____________________________________________________________
consensus             CGATGGTTTAAAGAGATGGCTCTTTTAATCCGTGTACTACGGTCGCCCCGGCAGTGAGCT