Contig 004475:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002G09Sequence516004475 (4)ref|XP_009594017.1|5e-12PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis]760011331 (5)ref|XP_011017101.1|7e-117PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica]
JMFF008C17Sequence515004475 (4)ref|XP_009594017.1|8e-11PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis]761011331 (5)ref|XP_011017101.1|8e-138PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica]
JMFF040B19Sequence437004475 (4)ref|XP_009594017.1|1e-17PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis]190011331 (5)ref|XP_011016941.1|8e-08PREDICTED: probable protein phosphatase 2C 38 isoform X2 [Populus euphratica]
JMSF025I04Sequence647004475 (4)ref|XP_009594017.1|2e-37PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis]788011331 (5)ref|XP_011017101.1|6e-143PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica]

Alignment

This contig is upended


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JMSF025I04+                      AACAAACGTGCTGAGGACCCGTNTCAACCGAGCTCAATGACCCTGATTC
                      ____________________________________________________________
consensus                        AACAAACGTGCTGAGGACCCGTNTCAACCGAGCTCAATGACCCTGATTC
 
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JMSF025I04+           GAGCTGGCACTGATCCTCCAGTACATTATTTGCTTGAATTACAGCCATTGAGAATTCCCC
                      ____________________________________________________________
consensus             GAGCTGGCACTGATCCTCCAGTACATTATTTGCTTGAATTACAGCCATTGAGAATTCCCC
 
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JMFF040B19+           ATTGACATGATGCCCTAAATCTTTATACCACAACAACCCATCCACCCGGCCATTCGGGTC
JMSF025I04+           ATTGACATGATGCCCTAAATCTTTATACCACAACAACCCATCCACCCGGCCATTCGGGTC
JMFF002G09+                                    TACCACAACAACCCATCCACCCGGCCATTCGGGTC
JMFF008C17+                                    TACCACAACAACCCATCCACCCGGCCATTCGGGTC
                      ____________________________________________________________
consensus             ATTGACATGATGCCCTAAATCTTTATACCACAACAACCCATCCACCCGGCCATTCGGGTC
 
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JMFF040B19+           TCCCCCTCTACTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
JMSF025I04+           TCCCCCTCTACTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
JMFF002G09+           TCCCCCTCTACTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
JMFF008C17+           TCCCCCTCTNCTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
                      ____________________________________________________________
consensus             TCCCCCTCTACTACTCCAATCTTGGCCCTCATCCTCAATGGTAGGCCTCCAACAAGGGTA
 
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JMFF040B19+           TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
JMSF025I04+           TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
JMFF002G09+           TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
JMFF008C17+           TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
                      ____________________________________________________________
consensus             TACAATTCTTCTCCATGTAGTAGTCACCATTCCTTACATATTATGCTTGCAATAACCCTC
 
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JMFF040B19+           AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
JMSF025I04+           AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
JMFF002G09+           AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
JMFF008C17+           AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
                      ____________________________________________________________
consensus             AAGTCTCACCCAAATGACCCAGCAATCACAACACTCATTAAATCTCCCTTACCCCTTATA
 
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JMFF040B19+           CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
JMSF025I04+           CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
JMFF002G09+           CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
JMFF008C17+           CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
                      ____________________________________________________________
consensus             CCCCAATCCCTTCACCTAAAAAAGTTTCAGTCTTTGCGCATATATTAATCGAGGTAAACA
 
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JMFF040B19+           GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
JMSF025I04+           GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
JMFF002G09+           GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
JMFF008C17+           GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
                      ____________________________________________________________
consensus             GCATTTAATCCATGTGCAAACAATCAAACGAGGGATCAAAATCAATGCCTTGAATCCCCG
 
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JMFF040B19+           CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
JMSF025I04+           CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
JMFF002G09+           CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
JMFF008C17+           CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
                      ____________________________________________________________
consensus             CTCCTCAAGATCCCATTTTTATCGTCAGAATTTGCACGATCGGTTCTACTGAGAGAGAAG
 
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JMFF040B19+           AACAATTGTTTTAGAAT                                           
JMSF025I04+           AACAATTGTTTTAGAATGAGGAAAGCAGAGGAGGGTGGGCGGGGTGGAGGAGGAGTTGTT
JMFF002G09+           AACAATTGTTTTAGAATGAGGAAAGCAGAGGAGGGTGGGCGGGGTGGAGGAGGAGTTGTT
JMFF008C17+           AACAATTGTTTTAGAATGAGGAAAGCAGAGGAGGGTGGGCGGGGTGGAGGAGGAGTTGTT
                      ____________________________________________________________
consensus             AACAATTGTTTTAGAATGAGGAAAGCAGAGGAGGGTGGGCGGGGTGGAGGAGGAGTTGTT
 
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JMSF025I04+           TTTTCCCTTTTTTATTTTTTTTTGGGTTTTTTCTTTATTGTAAAAAGAAAGAGAGAC   
JMFF002G09+           TTTTCCCTTTTTTATTTTTTTTTGGGTTTTTTCTTTATTGTAAAAAGAAAGAGAGAC   
JMFF008C17+           TTTTCCCTTTTTTATTTTTTTTTGGGTTTTTTCTTTATTGTAAAAAGAAAGAGAGACGGC
                      ____________________________________________________________
consensus             TTTTCCCTTTTTTATTTTTTTTTGGGTTTTTTCTTTATTGTAAAAAGAAAGAGAGACGGC