Contig 004474:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF037N09-                                        GAGAGTAGTAGCTCCATCCATACTTCTTTCT
                      ____________________________________________________________
consensus                                          GAGAGTAGTAGCTCCATCCATACTTCTTTCT
 
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JMSF037N09-           CTCTCTAAATTCTCTATTCTTCGCCGCTTTATCTCTCTACCCTGCCTGCAGAAAGAATGG
                      ____________________________________________________________
consensus             CTCTCTAAATTCTCTATTCTTCGCCGCTTTATCTCTCTACCCTGCCTGCAGAAAGAATGG
 
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JMSF037N09-           GGAAGCAAAAGGTAGTGATCGGTATCTCAATCAAGGACCAGAAGGCTCGTACCAAGGCCT
rJMSF037N09+                                    TCAATCAAGGACCAGAAGGCTCGTACCAAGGCCT
                      ____________________________________________________________
consensus             GGAAGCAAAAGGTAGTGATCGGTATCTCAATCAAGGACCAGAAGGCTCGTACCAAGGCCT
 
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JMSF037N09-           TCAAGATTGCCGTCAGCCTGCCTGGTACGCATAACTTTATTTCTTTATAGACCGTCATCA
rJMSF037N09+          TCAAGATTGCCGTCAGCCTGCCTGGTACGCATAACTTTATTTCTTTATAGACCGTCATCA
                      ____________________________________________________________
consensus             TCAAGATTGCCGTCAGCCTGCCTGGTACGCATAACTTTATTTCTTTATAGACCGTCATCA
 
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JMSF037N09-           CATTTTTCACCAAGTACTGGTCTTTACCGGCAAGTTTTGTGGTTTCCTGCAGGGGTTGAA
rJMSF037N09+          CATTTTTCNCCAAGTACTGGTCTTTACCGGCAAGTTTTGTGGTTTCCTGCAGGGGTTGAA
rJMSF001N11+                                                             GGGGTTGAA
                      ____________________________________________________________
consensus             CATTTTTCACCAAGTACTGGTCTTTACCGGCAAGTTTTGTGGTTTCCTGCAGGGGTTGAA
 
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JMSF037N09-           TCGGCGGCTATGCAAGCGGAGAAGGGGCAGTTAGAGGTGGTGGGCGAGTTCGACTCGGTG
rJMSF037N09+          TCGGCGGNTATGCAAGCGGAGAAGGGGCNNTTAGAGGTGGTGGGCGAGTTCGACTCGGTG
rJMSF001N11+          TCGGCGGCTATGCAAGCGGAGAAGGGGCAGTTAGAGGTGGTGGGCGAGTTCGACTCGGTG
                      ____________________________________________________________
consensus             TCGGCGGCTATGCAAGCGGAGAAGGGGCAGTTAGAGGTGGTGGGCGAGTTCGACTCGGTG
 
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JMSF037N09-           GTTCTGGCGAACCTGCTGAGGAAGAGGGTGGGGCAAGCGGAGCTAGTGAGCGTGGGTTCG
rJMSF037N09+          GTTCTGGCGAACCTGCTGAGGAAGAGGGTGGGGCAAGCGGAGCTAGTGAGCGTGGGTTCG
rJMSF001N11+          GTTNTGGCGAACCTGCTGAGGAAGAGGGTGGGGCAAGCGGAGCTAGTGAGCGTGGGTTCG
                      ____________________________________________________________
consensus             GTTCTGGCGAACCTGCTGAGGAAGAGGGTGGGGCAAGCGGAGCTAGTGAGCGTGGGTTCG
 
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JMSF037N09-           GCCGAGAAAAAGGAAGAGAAAAAGGAGGAGAAGAAGGAGGATAAGAAGAAAGACGAGGCC
rJMSF037N09+          GCCGAGAAAAAGGAAGAGAAAAAGGAGGAGAAGAAGGAGGATAAGAAGAAAGACGAGGCC
rJMSF001N11+          GCCGAGAAAAAGGAAGAGAAAAAGGAGGNGAAGAAGGAGGATAAGAAGAAAGACGAGGCC
                      ____________________________________________________________
consensus             GCCGAGAAAAAGGAAGAGAAAAAGGAGGAGAAGAAGGAGGATAAGAAGAAAGACGAGGCC
 
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JMSF037N09-           CAACCACCAAAAGTCGTTACAGTCTTCCAGGATCCTTCTCACTTTCCTTACCCCCCTTAC
rJMSF037N09+          CAACCNCCAAAAGTCGTTACAGTNTTCCNGGATCCTTCTCACTTTCCTTACCCCCCTTAC
rJMSF001N11+          CAACCNCCAAAAGTCGTTACAGTNTTCCNGGATCCTTCTCNCTTTCCTTACCCCCCTTAC
                      ____________________________________________________________
consensus             CAACCACCAAAAGTCGTTACAGTCTTCCAGGATCCTTCTCACTTTCCTTACCCCCCTTAC
 
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JMSF037N09-           TACGCTTGCCCAGTTCATGATTACCAACCCTCCGTCTGCTCTATTATGTAAACTCCCACC
rJMSF037N09+          TACGCTTGCCCAGTTCATGATTACCAACCCTCCGTNTGCTCTATTATGTAAACTCCCACC
rJMSF001N11+          TACGCTTGCCCAGTTCATGATTACCAACCCTCCGTNTGCTNTATTATGTAAACTCCCNCC
                      ____________________________________________________________
consensus             TACGCTTGCCCAGTTCATGATTACCAACCCTCCGTCTGCTCTATTATGTAAACTCCCACC
 
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JMSF037N09-           ATCCATTTCAAGTAGGATCAGAATAATCAGATCAGATGATGAAATCCATCATTAATCGCA
rJMSF037N09+          ATCCNTTTCAAGTAGGATCAGAATAATCAGATCAGATGATGAAATCCATCNTTAATCGCA
rJMSF001N11+          ATCCATTTCAAGTAGGATCAGAATAATCAGATCAGATGATGAAATCCATCNTTAATCGCA
                      ____________________________________________________________
consensus             ATCCATTTCAAGTAGGATCAGAATAATCAGATCAGATGATGAAATCCATCATTAATCGCA
 
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JMSF037N09-           TCAAAACAAGCGTGTATATCCCGTGCACACTCCCA                         
rJMSF037N09+          TCAAAACNAGCGTGTATATCCCGTGCACNCTCCCAAATAGTTTGTGANTGNGANTTTACT
rJMSF001N11+          TCAAAACAAGCGNGTATATCCCGTGCNCACTCCCAAATAGTTTGTGATTGCGATTTTACT
                      ____________________________________________________________
consensus             TCAAAACAAGCGTGTATATCCCGTGCACACTCCCAAATAGTTTGTGATTGCGATTTTACT
 
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rJMSF037N09+          GGTCGGTNTAAAACAAAGNGNGTATAAAAGAA                            
rJMSF001N11+          GGTCGGTCTAAAACAAAGTGTGTATAAAAGAATTAGGTTGTTTGGAACAAGTTTTGGGGT
JMFF007P13-                                                                      T
                      ____________________________________________________________
consensus             GGTCGGTCTAAAACAAAGTGTGTATAAAAGAATTAGGTTGTTTGGAACAAGTTTTGGGGT
 
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rJMSF001N11+          TTAGTATCATAGTATGATTATATGTGTCGAGGTTTGGTCTTCAATGGAGTGATTAGAAAG
JMFF007P13-           TTAGTATCATAGTATGATTATATGTGTCGAGGTTTGGTCTTCAATGGAGTGATTAGAAAG
                      ____________________________________________________________
consensus             TTAGTATCATAGTATGATTATATGTGTCGAGGTTTGGTCTTCAATGGAGTGATTAGAAAG
 
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rJMSF001N11+          TTGGGAT                                                     
JMFF007P13-           TTGGGATTGTATTATCAAAAAAAAAAGTTGGGATTGCATATTCAAAAAAGAAAAAAAAAA
                      ____________________________________________________________
consensus             TTGGGATTGTATTATCAAAAAAAAAAGTTGGGATTGCATATTCAAAAAAGAAAAAAAAAA