Contig 004472:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN003F04+                                        GCGGCTCAAACACAAGAACGCCGCCATCTGA
                      ____________________________________________________________
consensus                                          GCGGCTCAAACACAAGAACGCCGCCATCTGA
 
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JMFN003F04+           TAGCCCTAACGCAAACTGGTTTGGATCTTGTGGATGGGGAGAGAACTAGTCTCGAGXXXX
                      ____________________________________________________________
consensus             TAGCCCTAACGCAAACTGGTTTGGATCTTGTGGATGGGGAGAGAACTAGTCTCGAGNNNN
 
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JMFN003F04+           XXXXXXXXXXXXXXGGTATTTTTTTTTCAACGGCGAATAAACGCGGAGGGAACAAATCAT
rJMSF027N18-                        GGTATTTTTTTTTCANCGGCNAAAAAACGCGGAGGGAACAAACCAT
JMFN034E12+                            ATTTTTTTTTTAACGGCGAATAAACGCGGAGGGAACAAATCAT
rJMSF051N14-                           ATTTTTTTTTCAACGGCNAANAAACGCGGAGGGAACAAATCAT
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNGGTATTTTTTTTTCAACGGCGAATAAACGCGGAGGGAACAAATCAT
 
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JMFN003F04+           ATGGTGGGAACCTAATGTGCACCCAGCAGCGTTGACCGACTGTGCAAGTCCCTTTGTCAT
rJMSF027N18-          ANGGGGGGAACCTAANGNGCACCCAGNAGCGTTNACCGACGGGGCAAGTCCCTTTGTCAT
JMFN034E12+           ATGGTGGGAACCTAATGTGCACCCAGCAGCGTTGACCGACTGTGCAAGTCCCTTTGTCAT
rJMSF051N14-          ANGGGGGGAACCTAAGGNGCACCCAGCAGCGTTNACCGACNGNGCAAGTCCCTTTGTCAT
                      ____________________________________________________________
consensus             ATGGTGGGAACCTAATGTGCACCCAGCAGCGTTGACCGACTGTGCAAGTCCCTTTGTCAT
 
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JMFN003F04+           CTTCCGTCTGAACCATGGACGGCGCTGATTTGATTTCGATTAGACTCTTTGGTTACGTGG
rJMSF027N18-          CTTCCGTCNNAACCANGGACGGNNCTNATTTGATTTCAATNAAACNCTTTGGTTCCGNGG
JMFN034E12+           CTTCCGTCTGAACCATGGACGGCGCTGATTTGATTTCGATTAGACTCTTTGGTTCCGTGG
rJMSF051N14-          CTTCCGTCNNAACCANGGACGGCGCTNATTTGATTTCAATNAAACNCTTTGGTTCCGGGG
                      ____________________________________________________________
consensus             CTTCCGTCTGAACCATGGACGGCGCTGATTTGATTTCGATTAGACTCTTTGGTTCCGTGG
 
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JMFN003F04+           CTCTGCGCCGTTGGATTTGAGGACCGCGTGGTGATCCACGGTTAAGATGATTCGAGGATT
rJMSF027N18-          CTCTGCNCCGTTGNATTTNAGGACCGCGGGGNGANCCACGGTTAAAATGATTCGAGGATT
JMFN034E12+           CTCTGCGCCGTTGGATTTGAGGACCGCGTGGTGATCCACGGTTAAGATGATTCGAGGATT
rJMSF051N14-          CTCTGCNCCGTTGGATTTNAGGACCGCGGGGNGATCCACGGTTAAAATGATTCNAGGATT
                      ____________________________________________________________
consensus             CTCTGCGCCGTTGGATTTGAGGACCGCGTGGTGATCCACGGTTAAGATGATTCGAGGATT
 
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JMFN003F04+           AGAGAGGCCGGAGTTTCCCCGATCGATTGCGAATGGTTGTGTTCTCCTTCGTAGGTTACA
rJMSF027N18-          AAANAGGCCGGANTTTCCCCNATCGATNGCNAANGGTTGNGTNCNCCTTCGAAGGTNACA
JMFN034E12+           AGAGAGGCCGGAGTTTCCCCGATCGATTGCGAATGGTTGTGTTCTCCTTCGTAGGTTACA
rJMSF051N14-          AAANAGGCCGGAGTTTCCCCNATCGATNGCNAAGGGTTGNGTTCNCCTTCGNAGGTNACA
JMSF051N14+                                             GGTTGTGTTCTCCTTCGTAGGTTACA
                      ____________________________________________________________
consensus             AGAGAGGCCGGAGTTTCCCCGATCGATTGCGAATGGTTGTGTTCTCCTTCGTAGGTTACA
 
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JMFN003F04+           ATTAACATCGTCGGATCATCCAGTGCCCGCTCCACATGCTTCCTCGCCGGACATCCTCGT
rJMSF027N18-          ATTAACATCGTCGGATCATCCAGNGCCCGCTCCANANGCTTCCTCGCCGNACATCCTCGN
JMFN034E12+           ATTAACATCGTCGGATCATCCAGTGCCCGCTCCACATGCTTCCTCGCCGGACATCCTCGT
rJMSF051N14-          ATTAACATCGNCGNATCATCCAGNGCCCGCTCCACANGCTTCCTCGCCGGACATCCTCGN
JMSF051N14+           ATTAACATCGTCGGATCATCCAGTGCCCGCTCCACATGCTTCCTCGCCGGACATCCTCGT
                      ____________________________________________________________
consensus             ATTAACATCGTCGGATCATCCAGTGCCCGCTCCACATGCTTCCTCGCCGGACATCCTCGT
 
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JMFN003F04+           ACGCTGCTACACTTATAATAACCCCTAGGATGTGGGGAGCCTTTGATGGGCTTTTGGCCG
rJMSF027N18-          ACGCNGCTACACTTATAANAACCCCNAGNATGNGGGGAGCCTTTGANGGGCTTTTGGCCG
JMFN034E12+           ACGCTGCTACACTTATAATAACCCCTAGGATGTGGGGAGCCTTTGATGGGCTTTTGGCCG
rJMSF051N14-          ACGCTGCTACACTTATAANAACCCCNAGGANGNGGGGAGCCTTTGANGGGCTTTNGGCCG
JMSF051N14+           ACGCTGCTACACTTATAATAACCCCTAGGATGTGGGGAGCCTTTGATGGGCTTTTGGCCG
                      ____________________________________________________________
consensus             ACGCTGCTACACTTATAATAACCCCTAGGATGTGGGGAGCCTTTGATGGGCTTTTGGCCG
 
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JMFN003F04+           TATTTTCGCCAGGAGAAATCGTCTGGGGGAATATCAGCCATCTTCATGCTGATAGCAGGG
rJMSF027N18-          NATTTTCCCCNGGAAAAATCGNCNGGGGNAATATCACCCATCTNCANGCNGATAGCAGGG
JMFN034E12+           TATTTTCGCCAGGAGAAATCGTCTGGGGGAATATCAGCCATCTTCATGCTGATAGCAGGG
rJMSF051N14-          NATTTTCNCCAGGAAAAATCGNCNGGGGNAANATCANCCATCTTCANGCTGATAGCAGGG
JMSF051N14+           TATTTTCGCCAGGAGAAATCGTCTGGGGGAATATCAGCCATCTTCATGCTGATAGCAGGG
                      ____________________________________________________________
consensus             TATTTTCGCCAGGAGAAATCGTCTGGGGGAATATCAGCCATCTTCATGCTGATAGCAGGG
 
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JMFN003F04+           ATTCTAACCACTCTTTTGAC                                        
rJMSF027N18-          ATNCTAACCACTCTTTTNACTCTGGATTTCCTTTTCTTGGGGCAATGGCAACGTCC    
JMFN034E12+           ATTCTAACCACTCTTTTGACTCTTGATTTCCT                            
rJMSF051N14-          ATTCTAACCACNCTTTTGACNCTNGATTTCCTTTTCTTGGGGCAATGGCAACGTCCTGAG
JMSF051N14+           ATTCTAACCACTCTTTTGACTCTTGATTTCCTTTTCTTGGGGCAATGGCAACGTCCTGAG
                      ____________________________________________________________
consensus             ATTCTAACCACTCTTTTGACTCTTGATTTCCTTTTCTTGGGGCAATGGCAACGTCCTGAG
 
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rJMSF051N14-          GCTGACCCACCAGCACTACCGCACTTTAGGGAGGAAT                       
JMSF051N14+           GCTGACCCACCAGCACTACCGCACTTTAGGGAGGAATCGTCCATTGAATTGCACTTCCGT
                      ____________________________________________________________
consensus             GCTGACCCACCAGCACTACCGCACTTTAGGGAGGAATCGTCCATTGAATTGCACTTCCGT
 
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JMSF051N14+           TTGAACGACGACGTGGACAGAGGGGGACGGCCGGCCGACGAGACCTGGGAGAGATTGGTT
                      ____________________________________________________________
consensus             TTGAACGACGACGTGGACAGAGGGGGACGGCCGGCCGACGAGACCTGGGAGAGATTGGTT
 
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JMSF051N14+           ATCTGGAAACCGGAGGAAAGTGAAGGTTGTAAGCTCTCTGTGTCGCCGGTAAGCGATGAG
                      ____________________________________________________________
consensus             ATCTGGAAACCGGAGGAAAGTGAAGGTTGTAAGCTCTCTGTGTCGCCGGTAAGCGATGAG
 
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JMSF051N14+           ATGAAAGAGCCCGGCGAGGATGTGGCTTGGGAGGCGGAGAAATTGATGGTGGTCGACGAT
                      ____________________________________________________________
consensus             ATGAAAGAGCCCGGCGAGGATGTGGCTTGGGAGGCGGAGAAATTGATGGTGGTCGACGAT
 
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JMSF051N14+           TCTTTCCGGGCCGCCGCCTCCGGCGCCGGCCCGTTCTTCAGCAGGTGGTGGTGATTGTGC
JMFS071E02+              TTCCGGGCCGCGGCCTCCGGCGCCGGCCCGTTCTTCAGCAGGTGGTGGTGATTGTGC
                      ____________________________________________________________
consensus             TCTTTCCGGGCCGCGGCCTCCGGCGCCGGCCCGTTCTTCAGCAGGTGGTGGTGATTGTGC
 
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JMSF051N14+           GGGAGCGGCGGCAATCGTTGAATCGGCGGCGGAGAATACACTTTGGAGGCACCCGTGTGC
JMFS071E02+           GGGAGCGGCGGCAATCGTTGAATCGGCGGCGGAGAATACACTTTGGAGGCACCCGTGTGC
                      ____________________________________________________________
consensus             GGGAGCGGCGGCAATCGTTGAATCGGCGGCGGAGAATACACTTTGGAGGCACCCGTGTGC
 
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JMSF051N14+           GGCTTCTCGGAGTTCTCGATAACCCGGGTTTGACCCGAC                     
JMFS071E02+           GGCTTCTCGGAGTTCTCGATAACCCGGGTTTGACCCGACGGCACGGGGTCCGATTCCTGA
                      ____________________________________________________________
consensus             GGCTTCTCGGAGTTCTCGATAACCCGGGTTTGACCCGACGGCACGGGGTCCGATTCCTGA
 
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JMFS071E02+           TCCATTTTCTTCAGCGGTTGCGGAGCCGGAGGGTTACAAATCGGGCCCCTCCGGAACCGC
                      ____________________________________________________________
consensus             TCCATTTTCTTCAGCGGTTGCGGAGCCGGAGGGTTACAAATCGGGCCCCTCCGGAACCGC
 
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JMFS071E02+           GCGTGACCCGTCAGGGTCCGATCGAGCAACGAAATAAACTTCTTAAACTTACTCACAGCA
                      ____________________________________________________________
consensus             GCGTGACCCGTCAGGGTCCGATCGAGCAACGAAATAAACTTCTTAAACTTACTCACAGCA
 
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JMFS071E02+           ACGTCCGCCACCGCCTGGTAATCCCCGGCCGCCGGCGGCGCCAAAGACCCAGAAGAAGAA
                      ____________________________________________________________
consensus             ACGTCCGCCACCGCCTGGTAATCCCCGGCCGCCGGCGGCGCCAAAGACCCAGAAGAAGAA
 
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JMFS071E02+           AACCCACTACTACTTTGCGGCTGCGATTGAGAAAGCAATCTGATAAGCTTCTCAACGCTC
JMSF027N18+                                      TGAGAAAGCAATCTGATAAGCTTCTCAACGCTC
                      ____________________________________________________________
consensus             AACCCACTACTACTTTGCGGCTGCGATTGAGAAAGCAATCTGATAAGCTTCTCAACGCTC
 
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JMFS071E02+           TGAAACCCAGCGGCGGCCGCCTCCTTCACGGCGTTGTCCTCCATCTTAGCGGCGGCGAAG
JMSF027N18+           TGAAACCCAGCGGCGGCCGCCTCCTTCANGGCGTTGTCNTCCATNTTAGCGGCGGNGAAG
                      ____________________________________________________________
consensus             TGAAACCCAGCGGCGGCCGCCTCCTTCACGGCGTTGTCCTCCATCTTAGCGGCGGCGAAG
 
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JMFS071E02+           CCGCCGTTCCTGTAACCAGACAACAACTCCACAGCCATCTCTATTCCACCATAAACAAAC
JMSF027N18+           CCGCCGTTCCTGTAACCAGACAACAACTCCACAGCCATCTCTATTCCACCATAAACAAAC
JMFF007N23+           CCGCCGTTCCTGTAACCAGACAACAACTCCACAGCCATCTCTATTCCACCATAAACAAAC
                      ____________________________________________________________
consensus             CCGCCGTTCCTGTAACCAGACAACAACTCCACAGCCATCTCTATTCCACCATAAACAAAC
 
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JMFS071E02+           AAAAAAACCCTCAAAGATCTCTGAAACTCTGTAGAGTCAAAAAGAAAGAGAGAAGAAAGA
JMSF027N18+           AAAAAAACCCTCAAAGATCTCTGAAACTCTGTAGAGTCAAAAAGAAAGAGAGAAGAAAGA
JMFF007N23+           AAAAAAACCCTCAAAGATCTCTGAAACTCTGTAGAGTCAAAAAGAAAGAGAGAAGAAAGA
                      ____________________________________________________________
consensus             AAAAAAACCCTCAAAGATCTCTGAAACTCTGTAGAGTCAAAAAGAAAGAGAGAAGAAAGA
 
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JMFS071E02+           GTTTGA                                                      
JMSF027N18+           GTTTGAGAGAGAGAATCAGC                                        
JMFF007N23+           GTTTGAGAGAGAGAATCAGCAAATTGAACCCAACTCCAAGACGATTAAAATAGACAAGAT
                      ____________________________________________________________
consensus             GTTTGAGAGAGAGAATCAGCAAATTGAACCCAACTCCAAGACGATTAAAATAGACAAGAT