Contig 004471:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF007C13-                                                            ATGAACCCCA
                      ____________________________________________________________
consensus                                                               ATGAACCCCA
 
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rJMFF007C13-          ATATTGGATCAAACCTAGGAAGAATAAACAAAAAAGCAAAGAACAACCCACAAATTTAAG
                      ____________________________________________________________
consensus             ATATTGGATCAAACCTAGGAAGAATAAACAAAAAAGCAAAGAACAACCCACAAATTTAAG
 
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rJMFF007C13-          TCTAATCAAATATTAAATGAGTCTACTAATGAAGGGAAATTCAAAGGCCTGCTAAACCGA
                      ____________________________________________________________
consensus             TCTAATCAAATATTAAATGAGTCTACTAATGAAGGGAAATTCAAAGGCCTGCTAAACCGA
 
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rJMFF007C13-          TCCATGTTGTTCAACCAAGCTTGCTGATGAGTGATGAAGGACTAGAACCAAGCTTGCTGA
                      ____________________________________________________________
consensus             TCCATGTTGTTCAACCAAGCTTGCTGATGAGTGATGAAGGACTAGAACCAAGCTTGCTGA
 
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rJMFF007C13-          TGAGTGATGAAGGACTAGAACCAAGCTTGTAAACCTGTCGAGGTCTCGCTCAACCAAAGA
                      ____________________________________________________________
consensus             TGAGTGATGAAGGACTAGAACCAAGCTTGTAAACCTGTCGAGGTCTCGCTCAACCAAAGA
 
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rJMFF007C13-          AATCCGAAAGCTTGCTGCTGAAACCGAATCTGCGACCCGAACTACATCAAGTCATGACAG
                      ____________________________________________________________
consensus             AATCCGAAAGCTTGCTGCTGAAACCGAATCTGCGACCCGAACTACATCAAGTCATGACAG
 
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rJMFF007C13-          ACAAAGCAACAATACATATTCGGAAAGATAAATTGAAAGCAACCGATCAATATAAATGCA
                      ____________________________________________________________
consensus             ACAAAGCAACAATACATATTCGGAAAGATAAATTGAAAGCAACCGATCAATATAAATGCA
 
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rJMFF007C13-          AAAGTTCCAAAAAACCAAGCATAGGATAAACCGATCTATTCGCTCAACTAGAACAAATCC
JMFN028A03+                                                        AACTAGAACAAATCC
JMFS133A11+                                                               ACAAATCC
                      ____________________________________________________________
consensus             AAAGTTCCAAAAAACCAAGCATAGGATAAACCGATCTATTCGCTCAACTAGAACAAATCC
 
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rJMFF007C13-          GGAGCCTTGAACTTGATATCAAATCCACGATCTGCGCTACATCAACATGACAAGACATAC
JMFN028A03+           GAAGCCTTGCACTTGAATTCAAATCCACGATCTGAGCTACATCAACATGACAAGACATAC
JMFS133A11+           GGAGCCTTGAACTTGATATCAAATCCACGATCTGCGCTACATCAACATGACAAGACATAC
                      ____________________________________________________________
consensus             GGAGCCTTGAACTTGATATCAAATCCACGATCTGCGCTACATCAACATGACAAGACATAC
 
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rJMFF007C13-          AGACGAGAGTACGTAACTACAAATAGACATCTTCGGCAACCGATCAAGACATAAACCAAA
JMFN028A03+           AGACGAGCATAAGTAACTACAAATAGACATCTTCAGCAACCG--------ATAAACCAAA
JMFS133A11+           AGACGAGCGTACGTAACTACAAATAGACATCTTCGGCAACCGATCAAGACATAAACCAAA
JMFF017B18+                                                             ATAAACCAAA
                      ____________________________________________________________
consensus             AGACGAGCGTACGTAACTACAAATAGACATCTTCGGCAACCGATCAAGACATAAACCAAA
 
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rJMFF007C13-          ATTCATAGAGA-ACCACGCATAAGATAACCAAACACGAATTATCAAATCGATCCATGTCG
JMFN028A03+           ATTCATAGAGA-ACCACGCATAAGATAACCAAACACGTATTATCAAATCGATCCATGTCG
JMFS133A11+           ATTCATAGAGA-ACCACGCATAAGATAACCAAACACGAATTATCAAATCGATCCATGTCG
JMFF017B18+           ATTCATAGAGACACCACGCATAAGATAACCAAACACGTATTATCAAATCGATCCANGTCG
JMFF007C13+                                                 ATTATCAAATCGATCCATGTCG
                      ____________________________________________________________
consensus             ATTCATAGAGA-ACCACGCATAAGATAACCAAACACGAATTATCAAATCGATCCATGTCG
 
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rJMFF007C13-          TTCAACCAAAAGACATCCGAAAGCAGCAGGCTGAAAT------CGAATCCACGATCCAAA
JMFN028A03+           TTCAACAAAAAGACATCCGAAAGCAGCAGGCTGAAATCCAAATCCAATCCACGATCCAAA
JMFS133A11+           TTCAACCAAAAGACATCCGAAAGCAGCAGGCTGAAAT------CGAATCCACGATCCAAA
JMFF017B18+           TTCAACAAAAAGACATCCGAAAGCAGCAGGCTGAAATCCAAATCCAATCCACGATCCAAA
JMFF007C13+           TTCAACCAAAAGACATCCGAAAGCAGCAGGCTGAAAT------NGAATCCACGATCCAAA
                      ____________________________________________________________
consensus             TTCAACCAAAAGACATCCGAAAGCAGCAGGCTGAAAT------CGAATCCACGATCCAAA
 
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rJMFF007C13-          CTACATCAAGTCATGATAGACATACCAACNATAAATAATCGGGAACAGAGA-CTTAAGCA
JMFN028A03+           CTACATCAAGTCATGACAGACATACCGGCAATAAATAATCGGAAACAGAAATCTTAAGCA
JMFS133A11+           CTACATCAAGTCATGATAGACATACCAACAATAAATAATCGGGAACAGAGA-CTTAAGCA
JMFF017B18+           CTACATCAAGTCATGACAGACATACCGGCAATAAATAATCGGAAACAGAAATCTTAAGCA
JMFF007C13+           NTACATCAAGTCATGATAGACATACCAACAATAAATAATCGGGAACAGAGA-CTTAAGCA
                      ____________________________________________________________
consensus             CTACATCAAGTCATGATAGACATACCAACAATAAATAATCGGGAACAGAGA-CTTAAGCA
 
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rJMFF007C13-          ACCGATCAATATAAATGCGAAATTTCCAGAAAATCAAGCACAGGATAA            
JMFN028A03+           ACCGATCAATATAAACGCGAAATTTCCACAAAATCAAGCATAGGATAATTAAACACGTAT
JMFS133A11+           ACCGATCAATATAAATGCGAAATTTCCAGAAAATCAAGCACAGGATAACTAGACACGTAT
JMFF017B18+           ACCGATCAATATAAACGCGAAATTTCCACAAAATCAAGCATAGGATAATTAAACACGTAT
JMFF007C13+           ACCGATCAATATAAATGCGAAATTTCCAGAAAATCAAGCACAGGATAACTAGACACGTAT
                      ____________________________________________________________
consensus             ACCGATCAATATAAATGCGAAATTTCCAGAAAATCAAGCACAGGATAATTAGACACGTAT
 
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JMFN028A03+           CGATCAAACCGAT                                               
JMFS133A11+           CGATCAAACCGATGGTTTTCGTTCAACAAGAACACATCCGAA                  
JMFF017B18+           CGATCAAACCGATCCGAAGCCTTGCACA----------------GTTGCACTTGACTTCA
JMFF007C13+           CGATCAAACCGATGGTTTTCGTTCAACAAGAACACATCCGAAGCCTTGAACTTGACTACA
                      ____________________________________________________________
consensus             CGATCAAACCGATGGTTTTCGTTCAACAAGAACACATCCGAAGCGTTGCACTTGACTTCA
 
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JMFF017B18+           AATCCACGATCTGAGTTACATCAACATGACAAGACATACAGACGAAGATGAGTAACTTGA
JMFF007C13+           AATCCACGATCTGAGCTACATTAACATGGCAAGACATACAGACGAACATGAGTAACTAGA
                      ____________________________________________________________
consensus             AATCCACGATCTGAGTTACATTAACATGGCAAGACATACAGACGAAGATGAGTAACTTGA
 
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JMFF017B18+           AACAGACTTCTTTGGCAACCGATCAAGAGAGAAACCAAAATTTCCAGAAAATCAAGCATC
JMFF007C13+           ATTGGACTTCTTTGGCAGCCGATCAAGAGAGAAACCAAAATTTCCAGAAAATCAA--AGC
                      ____________________________________________________________
consensus             ATTGGACTTCTTTGGCAGCCGATCAAGAGAGAAACCAAAATTTCCAGAAAATCAAGCATC
 
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JMFF017B18+           ATAGGATAACAAAACACGAATTAATCAAACCGATCACTACGAATCTGAAACAGCTATCCG
JMFF007C13+           ATAGGATAACAAAACACGAATTAATCAAACCGATCACTACAAATCTCAAACAGCTATCCT
                      ____________________________________________________________
consensus             ATAGGATAACAAAACACGAATTAATCAAACCGATCACTACGAATCTGAAACAGCTATCCT
 
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JMFF017B18+           AAACCCCATGGAA                                               
JMFF007C13+           AAACCCCATGGAATATGAGAGAGATTTGAGAGACTGCAAAACATATATTAAGTTGAGAAC
                      ____________________________________________________________
consensus             AAACCCCATGGAATATGAGAGAGATTTGAGAGACTGCAAAACATATATTAAGTTGAGAAC