| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006A11 | Sequence | 595 | 004462 (6) | gb|AAF86340.1|AF277455_1 | 9e-73 | UMP synthase [Nicotiana plumbaginifolia] | 785 | 001050 (6) | gb|AAF86340.1|AF277455_1 | 3e-129 | UMP synthase [Nicotiana plumbaginifolia] |
| JMFF009D11 | Sequence | 552 | 004462 (6) | ref|XP_006362855.1| | 4e-84 | PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum] | 743 | 001050 (6) | gb|AAF86340.1|AF277455_1 | 3e-119 | UMP synthase [Nicotiana plumbaginifolia] |
| JMFF015H15 | Sequence | 548 | 004462 (6) | ref|XP_006362855.1| | 3e-82 | PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum] | 641 | 001050 (6) | ref|XP_011091831.1| | 1e-93 | PREDICTED: uridine 5'-monophosphate synthase [Sesamum indicum] |
| JMSF021A14 | Sequence | 676 | 004462 (6) | ref|XP_006362855.1| | 2e-100 | PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum] | 806 | 001050 (6) | ref|XP_009606895.1| | 6e-138 | PREDICTED: uridine 5'-monophosphate synthase [Nicotiana tomentosiformis] |
| JMSF033A14 | Sequence | 635 | 004462 (6) | ref|XP_006362855.1| | 8e-103 | PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum] | 728 | 001050 (6) | ref|XP_011091831.1| | 4e-90 | PREDICTED: uridine 5'-monophosphate synthase [Sesamum indicum] |
| JMSF038A21 | Sequence | 685 | 004462 (6) | gb|AAF86340.1|AF277455_1 | 1e-96 | UMP synthase [Nicotiana plumbaginifolia] | 875 | 001050 (6) | ref|XP_009606895.1| | 9e-153 | PREDICTED: uridine 5'-monophosphate synthase [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF033A14+ CCTTCAATATCCTCACCATCTCAGTCAACTTCACCATGGCGTGCAGCCTAATTCCATTCT
JMSF021A14+ TCCTCACCATCTCAGTCAACTTCACCATGGCGTGCAGCCTAATTCCATTCT
JMSF038A21+ TCAGTCAACTTCACCATGGCGTGCAGCCTAATTCCATTCT
____________________________________________________________
consensus CCTTCAATATCCTCACCATCTCAGTCAACTTCACCATGGCGTGCAGCCTAATTCCATTCT
. : . : . : . : . : . :
JMSF033A14+ CAGCCAAATTCTCCCTACCTCCTTGTTCCCTGTCAATCATGACGACGGCGTCGGTAACCT
JMFF015H15+ TCCCTGTCAATCATGACGACGGCGTCGGTAACCT
JMFF009D11+ TTGTTCCCTGTCAATCATGACGACGGCGTCGGTAACCT
JMSF021A14+ CAGCCAAATTCTCCCTACCTCCTTGTTCCCTGTCAATCATGACGACGGCGTCGGTAACCT
JMSF038A21+ CAGCCAAATTCTCCCTACCTCCTTGTTCCCTGTCAATCATGACGACGGCGTCGGTAACCT
____________________________________________________________
consensus CAGCCAAATTCTCCCTACCTCCTTGTTCCCTGTCAATCATGACGACGGCGTCGGTAACCT
. : . : . : . : . : . :
JMSF033A14+ TGAGGCCAGCGGCGCGGAGAGGTGCGGCGGTCTCGAGAACGGAGGCGCCGCTGGTGACGA
JMFF015H15+ TGAGGCCAGCGGCGCGGAGAGGTGCGGCGGTCTCGAGAACGGAGGCGCCGCTGGTGACGA
JMFF009D11+ TGAGGCCAGCGGCGCGGAGAGGTGCGGCGGTCTCGAGAACGGAGGCGCCGCTGGTGACGA
JMSF021A14+ TGAGGCCAGCGGCGCGGAGAGGTGCGGCGGTCTCGAGAACGGAGGCGCCGCTGGTGACGA
JMSF038A21+ TGAGGCCAGCGGCGCGGAGAGGTGCGGCGGTCTCGAGAACGGAGGCGCCGCTGGTGACGA
JMFF006A11+ CCAGCGGCGCGGAGAGGTGCGGCGGTCTCGAGAACGGAGGCGCCGCTGGTGACGA
____________________________________________________________
consensus TGAGGCCAGCGGCGCGGAGAGGTGCGGCGGTCTCGAGAACGGAGGCGCCGCTGGTGACGA
. : . : . : . : . : . :
JMSF033A14+ GGTCCTCGATGATGAGGCAGACCTGGCCGGAGCTGAAGGCTCCCTCAATGGCCTTGGCGG
JMFF015H15+ GGTCCTCGATGATGAGGCAGACCTGGCCGGAGCTGAAGGCTCCCTCAATGGCCTTGGCGG
JMFF009D11+ GGTCCTCGATGATGAGGCAGACCTGGCCGGAGCTGAAGGCTCCCTCAATGGCCTTGGCGG
JMSF021A14+ GGTCCTCGATGATGAGGCAGACCTGGCCGGAGCTGAAGGCTCCCTCAATGGCCTTGGCGG
JMSF038A21+ GGTCCTCGATGATGAGGCAGACCTGGCCGGAGCTGAAGGCTCCCTCAATGGCCTNGGCGG
JMFF006A11+ GGTCCTCGATGATGAGGCAGACCTGGCCGGAGCTGAAGGCTCCCTCAATGGCCTTGGCGG
____________________________________________________________
consensus GGTCCTCGATGATGAGGCAGACCTGGCCGGAGCTGAAGGCTCCCTCAATGGCCTTGGCGG
. : . : . : . : . : . :
JMSF033A14+ TGCCGTAGTCCTTGACCTCCTTACGGCGCATGAGCATAGGAACATTGTTCGCGGTGGAAA
JMFF015H15+ TGCCGTAGTCCTTGACCTCCTTACGGCGCATGAGCATAGGAACATTGTTCGCGGTGGAAA
JMFF009D11+ TGCCGTAGTCCTTGACCTCCTTACGGCGCATGAGCATAGGAACATTGTTCGCGGTGGAAA
JMSF021A14+ TGCCGTAGTCCTTGACCTCCTTACGGCGCATGAGCATAGGAACATTGTTCGCGGTGGAAA
JMSF038A21+ TGCCGTAGTCCTTGACCTCCTTACGGCGCATGAGCATAGGAACATTGTTCGCGGTGGAAA
JMFF006A11+ TGCCGTAGTCCTTGACCTCCTTACGGCGCATGAGCATAGGAACATTGTTCGCGGTGGAAA
____________________________________________________________
consensus TGCCGTAGTCCTTGACCTCCTTACGGCGCATGAGCATAGGAACATTGTTCGCGGTGGAAA
. : . : . : . : . : . :
JMSF033A14+ TACAGGTGGCGATGGGAAGGGCGGTGTAGGGAACGCCGCAGACGAGGTCATAGGCGGAGG
JMFF015H15+ TACAGGTGGCGATGGGAAGGGCGGTGTAGGGAACGCCGCAGACGAGGTCATAGGCGGAGG
JMFF009D11+ TACAGGTGGCGATGGGAAGGGCGGTGTAGGGAACGCCGCAGACGAGGTCATAGGCGGAGG
JMSF021A14+ TACAGGTGGCGATGGGAAGGGCGGTGTAGGGAACGCCGCAGACGAGGTCATAGGCGGAGG
JMSF038A21+ TACAGGTGGCGATGGGAAGGGCGGTGTAGGGAACGCCGCAGACGAGGTCATAGGCGGAGG
JMFF006A11+ TACAGGTGGCGATGGGAAGGGCGGTGTAGGGAACGCCGCAGACGAGGTCATAGGCGGAGG
____________________________________________________________
consensus TACAGGTGGCGATGGGAAGGGCGGTGTAGGGAACGCCGCAGACGAGGTCATAGGCGGAGG
. : . : . : . : . : . :
JMSF033A14+ CGGAGGGAGGGATGATGGCGGTGAGCGTCTCGGAAATCTGGCGGAGGAGCGAAGGATACG
JMFF015H15+ CGGAGGGAGGGATGATGGCGGTGAGCGTCTCGGAAATCTGGCGGAGGAGCGAAGGATACG
JMFF009D11+ CGGAGGGAGGGATGATGGCGGTGAGCGTCTCGGAAATCTGGCGGAGGAGCGAAGGATACG
JMSF021A14+ CGGAGGGAGGGATGATGGCGGTGAGCGTCTCGGAAATCTGGCGGAGGAGCGAAGGATACG
JMSF038A21+ CGGAGGGAGGGATGATGGCGGTGAGCGTCTCGGAAATCTGGCGGAGGAGCGAAGGATACG
JMFF006A11+ CGGAGGGAGGGATGATGGCGGTGAGCGTCTCGGAAATCTGGCGGAGGAGCGAAGGATACG
____________________________________________________________
consensus CGGAGGGAGGGATGATGGCGGTGAGCGTCTCGGAAATCTGGCGGAGGAGCGAAGGATACG
. : . : . : . : . : . :
JMSF033A14+ AGACGATGAGGCGGAGGTCGATGTAGATGGGGGAAAGGATGCCGGATTTGAGCTTGAACT
JMFF015H15+ AGACGATGAGGCGGAGGTCGATGTAGATGGGGGAAAGGATGCCGGATTTGAGCTTGAACT
JMFF009D11+ AGACGATGAGGCGGAGGTCGATGTAGATGGGGGAAAGGATGCCGGATTTGAGCTTGAACT
JMSF021A14+ AGACGATGAGGCGGAGGTCGATGTAGATGGGGGAAAGGATGCCGGATTTGAGCTTGAACT
JMSF038A21+ AGACGATGAGGCGGAGGTCGATGTAGATGGGGGAAAGGATGCCGGATTTGAGCTTGAACT
JMFF006A11+ AGACGATGAGGCGGAGGTCGATGTAGATGGGGGAAAGGATGCCGGATTTGAGCTTGAACT
____________________________________________________________
consensus AGACGATGAGGCGGAGGTCGATGTAGATGGGGGAAAGGATGCCGGATTTGAGCTTGAACT
. : . : . : . : . : . :
JMSF033A14+ CGCCGAACTTGACGGCGGAGATGTCGTGGAGCTGGAGGATCAGAGACTCCATAGCCTGTG
JMFF015H15+ CGCCGAACTTGACGGCGGAGATGTCGTGGAGCTGGAGGATCAGAGACTCCATAGCCTGTG
JMFF009D11+ CGCCGAACTTGACGGCGGAGATGTCGTGGAGCTGGAGGATCAGAGACTCCATAGCCTGTG
JMSF021A14+ CGCCGAACTTGACGGCGGAGATGTCGTGGAGCTGGAGGATCAGAGACTCCATAGCCTGTG
JMSF038A21+ CGCCGAACTTGACGGCGGAGATGTCGTGGAGCTGGAGGATCAGAGACTCCATAGCCTGTG
JMFF006A11+ CGCCGAACTTGACGGCGGAGATGTCGTGGAGCTGGAGGATCAGAGACTCCATAGCCTGTG
____________________________________________________________
consensus CGCCGAACTTGACGGCGGAGATGTCGTGGAGCTGGAGGATCAGAGACTCCATAGCCTGTG
. : . : . : . : . : . :
JMSF033A14+ CGGAAACTGATGATGGAAACGACGTCATCTCTTCTTCTCCTTCCTCACCTTCACAGCTTA
JMFF015H15+ CGGAAACTGATGATGGAAACGACGTCATCTCTTCTTCTCCTTCCTCACCTTCACAGCTTA
JMFF009D11+ CGGAAACTGATGATGGAAACGACGTCATCTCTTCTTCTCCTTCCTCACCTTCACAGCTTA
JMSF021A14+ CGGAAACTGATGATGGAAACGACGCCATCTCTTCTTCTCCTTCCTCACCTTCACAGCTTA
JMSF038A21+ CGGAAACTGATGATGGAAACGACGTCATCTCTTCTTCTCCTTCCTCACCTTCACAGCTTA
JMFF006A11+ CGGAAACTGATGATGGAAACGACGTCATCTCTTCTTCTCCTTCCTCACCTTCACAGCTTA
____________________________________________________________
consensus CGGAAACTGATGATGGAAACGACGTCATCTCTTCTTCTCCTTCCTCACCTTCACAGCTTA
. : . : . : . : . : . :
JMSF033A14+ AGCACAGAGAGTGAACAACAGGTGCAGTTATAG
JMFF015H15+ AGCACAGAGAGTGAACAACAGGTGCAGTTATAGT
JMFF009D11+ AGCACAGAGAGTGAACAACAGGTGCAGTTATAGT
JMSF021A14+ AGCACAGAGAGTGAACAACAGGTGCAGTTATAGTGAGAGAAGCGGCGACTGTGCTTTTGC
JMSF038A21+ AGCACAGAGAGTGAACAACAGGTGCAGTTATAGTGAGAGAAGCGGCGACTGTGCTTTTGC
JMFF006A11+ AGCACAGAGAGTGAACAACAGGTGCAGTTATAGTGAGAGAAGCGGCGACTGTGCTTTTGC
____________________________________________________________
consensus AGCACAGAGAGTGAACAACAGGTGCAGTTATAGTGAGAGAAGCGGCGACTGTGCTTTTGC
. : . : . : . : . : . :
JMSF021A14+ TTTTGTAGTAGCAGTGCGGCGGAC
JMSF038A21+ TTTTGTAGTAGCAGTGCGGCGGACATTAAAAGAGAACCTAAACT
JMFF006A11+ TTTTGTAGTAGCAGTGCGGCGGACATTAAAAGAGAACCTAAACTAAGGAGAAAAAAGATT
____________________________________________________________
consensus TTTTGTAGTAGCAGTGCGGCGGACATTAAAAGAGAACCTAAACTAAGGAGAAAAAAGATT