Contig 004461:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005J24Sequence261004461 (5)719006788 (3)ref|XP_009602497.1|5e-89PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform
JMFS030F09Sequence474004461 (5)ref|XP_009602497.1|6e-24PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform
JMFS058D06Sequence597004461 (5)ref|XP_009602497.1|8e-38PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform
JMSF011P05Sequence223004461 (5)654006788 (3)ref|XP_009795730.1|4e-98PREDICTED: leucine-rich repeat extensin-like protein 4 [Nicotiana sylvestris]
JMSF049K05Sequence223004461 (5)716006788 (3)ref|XP_009602497.1|4e-89PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform

Alignment

This contig is upended


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JMFS058D06+                                                        AACTCAGTGAGGGAA
                      ____________________________________________________________
consensus                                                          AACTCAGTGAGGGAA
 
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JMFS058D06+           ACAAGGTCTCTAAAGGTTTCTGGGATTGTGCCTGAAAATCTGTTGGTGTTGAGGTGGAGG
                      ____________________________________________________________
consensus             ACAAGGTCTCTAAAGGTTTCTGGGATTGTGCCTGAAAATCTGTTGGTGTTGAGGTGGAGG
 
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JMFS030F09+                                                           AGATTTGCATGG
JMFS058D06+           AGGGAGAGGTCTGTTAACAAAGAAAGCTCTTTTACAAGAACCCCTTTGAGATTTGCATGG
                      ____________________________________________________________
consensus             AGGGAGAGGTCTGTTAACAAAGAAAGCTCTTTTACAAGAACCCCTTTGAGATTTGCATGG
 
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JMFS030F09+           TTTAGATCTATACCTGCCACAACTTCATCTGGGTTGCCCATAAAATCTTGAGAGTCTGAG
JMFS058D06+           TTTAGATCTATACCTGCCACAACTTCATCTGGGTTGCCCATAAAATCTTGAGAGTCTGAG
                      ____________________________________________________________
consensus             TTTAGATCTATACCTGCCACAACTTCATCTGGGTTGCCCATAAAATCTTGAGAGTCTGAG
 
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JMFS030F09+           CAGAAAACCCCTTTGTAATCACACACATTTGACCCAACCCATGACTTCAAAATCCCCAAT
JMFS058D06+           CAGAAAACCCCTTTGTAATCACACACATTTGACCCAACCCATGACTTCAAAATCCCCAAT
                      ____________________________________________________________
consensus             CAGAAAACCCCTTTGTAATCACACACATTTGACCCAACCCATGACTTCAAAATCCCCAAT
 
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JMFS030F09+           GGGTCCTCAGAAACTGCAGATTTCAATGCTTGCAGAGCAGTGTATCCTTTTTGAAGCTTT
JMFS058D06+           GGGTCCTCAGAAACTGCAGATTTCAATGCTTGCAGAGCAGTGTATCCTTTTTGAAGCTTT
                      ____________________________________________________________
consensus             GGGTCCTCAGAAACTGCAGATTTCAATGCTTGCAGAGCAGTGTATCCTTTTTGAAGCTTT
 
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JMFS030F09+           GAGCCACCACCAGAAGAGCCTGTTGGCCCTGGACTGTTGATTCCTCCACCAATCCAAACC
JMSF049K05+                                                                 CAAACC
JMSF011P05+                                                                 CAAACC
JMFS058D06+           GAGCCACCACCAGAAGAGCCTGTTGGCCCTGGACTGTTGATTCCTCCACCAATCCAAACC
JMFF005J24+                                                  ATTCCTCCACCAATCCAAACC
                      ____________________________________________________________
consensus             GAGCCACCACCAGAAGAGCCTGTTGGCCCTGGACTGTTGATTCCTCCACCAATCCAAACC
 
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JMFS030F09+           CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
JMSF049K05+           CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
JMSF011P05+           CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
JMFS058D06+           CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
JMFF005J24+           CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
                      ____________________________________________________________
consensus             CCTCCACCACCACCACCACCGCCGCCGCCGCCCATTCCAATTCCAACTCCAACCCCAACA
 
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JMFS030F09+           CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
JMSF049K05+           CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
JMSF011P05+           CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
JMFS058D06+           CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
JMFF005J24+           CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
                      ____________________________________________________________
consensus             CCACCACTAACAGTCACAGTCACTGCAGCCTCAATGGCAATGGCATGAAGGAGAAGAGCA
 
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JMFS030F09+           AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
JMSF049K05+           AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
JMSF011P05+           AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
JMFS058D06+           AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
JMFF005J24+           AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
                      ____________________________________________________________
consensus             AAAAGAAGCCAGCTTTTTGCCATATTTCACCAACAGTCAAGATTCCAATTTGAGAGGAGT
 
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JMFS030F09+           TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGC                        
JMSF049K05+           TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGC                        
JMSF011P05+           TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGC                        
JMFS058D06+           TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGC                        
JMFF005J24+           TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGCATTGATGATGGAGGAAGTGTAAAT
                      ____________________________________________________________
consensus             TTCTTGTAAGGTTGTGCAAATGTGGTTAGTTGCTGCATTGATGATGGAGGAAGTGTAAAT