| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004E06 | Sequence | 591 | 004455 (4) | ref|XP_009632054.1| | 3e-77 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] | 792 | 001241 (5) | ref|XP_006368050.1| | 2e-157 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan |
| JMFF013K11 | Sequence | 556 | 004455 (4) | ref|XP_009632054.1| | 1e-69 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] | 736 | 001241 (5) | ref|XP_006368050.1| | 9e-159 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan |
| JMFF050H12 | Sequence | 488 | 004455 (4) | ref|XP_009632054.1| | 2e-51 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] | 480 | 001241 (5) | ref|XP_006368050.1| | 8e-59 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan |
| JMSF032L09 | Sequence | 676 | 004455 (4) | ref|XP_009632054.1| | 9e-101 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] | 720 | 001241 (5) | ref|XP_006368050.1| | 4e-149 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan |
This contig is upended
. : . : . : . : . : . :
JMSF032L09+ CCTGAGCACCCATATAGA
____________________________________________________________
consensus CCTGAGCACCCATATAGA
. : . : . : . : . : . :
JMSF032L09+ TTACACATTCTAAGCCAAAGCGAGCACAAACAGTTGCAGTGGCAACACCATGCTGACCAG
____________________________________________________________
consensus TTACACATTCTAAGCCAAAGCGAGCACAAACAGTTGCAGTGGCAACACCATGCTGACCAG
. : . : . : . : . : . :
JMSF032L09+ CTCCTGTCTCAGCTATAATGCGTTTCTTGCCCAACCGCTTTGCAAGCAAGGCTTGAGCAA
JMFF013K11+ AGCAAGGCTTGAGCAA
JMFF004E06+ CAGCTATAATGCGTTTCTTGCCCAACCGCTTTGCAAGCAAGGCTTGAGCAA
____________________________________________________________
consensus CTCCTGTCTCAGCTATAATGCGTTTCTTGCCCAACCGCTTTGCAAGCAAGGCTTGAGCAA
. : . : . : . : . : . :
JMSF032L09+ CAGCATTATTGATTTTGTGTGCCCCAGTGTGGTTCAGATCTTCCCTCTTGAGGTAGATGA
JMFF013K11+ CAGCATTATTGATTTTGTGTGCCCCAGTGTGGTTCAGATCTTCCCTCTTGAGGTAGATGA
JMFF050H12+ GTAGATGA
JMFF004E06+ CAGCATTATTGATTTTGTGTGCCCCAGTGTGGTTCAGATCTTCCCTCTTGAGGTAGATGA
____________________________________________________________
consensus CAGCATTATTGATTTTGTGTGCCCCAGTGTGGTTCAGATCTTCCCTCTTGAGGTAGATGA
. : . : . : . : . : . :
JMSF032L09+ GTGGTCCTTCACCATTAGGTCGCTTATAGTGCTCAGTAAGCCGTTCTGCAAAATACAGAG
JMFF013K11+ GTGGTCCTTCACCATTAGGTCGCTTATAGTGCTCAGTAAGCCGTTCTGCAAAATACAGAG
JMFF050H12+ GTGGTCCTTCACCATTAGGTCGCTTATAGTGCTCAGTAAGCCGTTCTGCAAAATACAGAG
JMFF004E06+ GTGGTCCTTCACCATTAGGTCGCTTATAGTGCTCAGTAAGCCGTTCTGCAAAATACAGAG
____________________________________________________________
consensus GTGGTCCTTCACCATTAGGTCGCTTATAGTGCTCAGTAAGCCGTTCTGCAAAATACAGAG
. : . : . : . : . : . :
JMSF032L09+ GGCTCTCTCTCCCAACATAGTCACGCAAGATTCCATCCAGCTCTTTCTGAAAAGCGTCAT
JMFF013K11+ GGCTCTCTCTCCCAACATAGTCACGCAAGATTCCATCCAGCTCTTTCTGAAAAGCGTCAT
JMFF050H12+ GGCTCTCTCTCCCAACATAGTCACGCAAGATTCCATCCAGCTCTTTCTGAAAAGCGTCAT
JMFF004E06+ GGCTCTCTCTCCCAACATAGTCACGCAAGATTCCATCCAGCTCTTTCTGAAAAGCGTCAT
____________________________________________________________
consensus GGCTCTCTCTCCCAACATAGTCACGCAAGATTCCATCCAGCTCTTTCTGAAAAGCGTCAT
. : . : . : . : . : . :
JMSF032L09+ CGACGGAGATGGCCTTGAACGCGGTCTCGAGCTCATCGAGAGCGTACATTAGCGTTTCGG
JMFF013K11+ CGACGGAGATGGCCTTGAACGCGGTCTCGAGCTCATCGAGAGCGTACATTAGCGTTTCGG
JMFF050H12+ CGACGGAGATGGCCTTGAACGCGGTCTCGAGCTCATCGAGAGCGTACATTAGCGTTTCGG
JMFF004E06+ CGACGGAGATGGCCTTGAACGCGGTCTCGAGCTCATCGAGAGCGTACATTAGCGTTTCGG
____________________________________________________________
consensus CGACGGAGATGGCCTTGAACGCGGTCTCGAGCTCATCGAGAGCGTACATTAGCGTTTCGG
. : . : . : . : . : . :
JMSF032L09+ GGACATACTTCCCGCCGAACTTGCCGAACCGGCCGAACGAATCGGGGCGTTGAAGGAAAG
JMFF013K11+ GGACATACTTCCCGCCGAACTTGCCGAACCGGCCGAACGAATCGGGGCGTTGAAGGAAAG
JMFF050H12+ GGACATACTTCCCGCCGACCTTGCCGAACCGGCCGAACGAATCGGGGCGTTGAAGGAAAG
JMFF004E06+ GGACATACTTCCCGCCGAACTTGCCGAACCGGCCGAACGAATCGGGGCGTTGAAGGAAAG
____________________________________________________________
consensus GGACATACTTCCCGCCGAACTTGCCGAACCGGCCGAACGAATCGGGGCGTTGAAGGAAAG
. : . : . : . : . : . :
JMSF032L09+ TCAGTTCAGACGCCTCCCGAGCCTCCATTTGCTGCTTTAGAGATCCTGCGGTGAGAGTGC
JMFF013K11+ TCAGTTCAGACGCCTCCCGAGCCTCCATTTGCTGCTTTAGAGATCCTGCGGTGAGAGTGC
JMFF050H12+ TCAGTTCAGACGCCTCCCGAGCCTCCATTTGCTGCTTTAGAGATCCTGCGGTGAGAGTGC
JMFF004E06+ TCAGTTCAGACGCCTCCCGAGCCTCCATTTGCTGCTTTAGAGATCCTGCGGCGAGAGTGC
____________________________________________________________
consensus TCAGTTCAGACGCCTCCCGAGCCTCCATTTGCTGCTTTAGAGATCCTGCGGTGAGAGTGC
. : . : . : . : . : . :
JMSF032L09+ AGAAAACCGCAGGTGCCTTGGCTGGGCGCGTCGTGAATTTGTTCAGTTTCAGAGGTAGGT
JMFF013K11+ AGAAAACCGCAGGTGCCTTGGCTGGGCGCGTCGTGAATTTGTTCAGTTTCAGAGGTAGGT
JMFF050H12+ AGAAAACCGCAGGTTCCTTGGCTGGGCGCGTCGTGAATTTGTTCAGTTTCAGAGGTAGGT
JMFF004E06+ AGAAAACCGCAGGTGCCTTGGCTGGGCGCGTCGTGAATTTGTTCAGTTTCAGAGGTAGGT
____________________________________________________________
consensus AGAAAACCGCAGGTGCCTTGGCTGGGCGCGTCGTGAATTTGTTCAGTTTCAGAGGTAGGT
. : . : . : . : . : . :
JMSF032L09+ GGCGCAAGGAGGAGGAGGAGGCGGAGGCGGCGGCACCGGTCGGCTTTGGGAGCAATGGGG
JMFF013K11+ GGCGCAAGGAGGAGGAGGAGGCGGAGGCGGCGGCACCGGTCGGCTTTGGGAGCAATGGGG
JMFF050H12+ GGCGCAAGGAGGAGGAGGAGGCGGAGGCGGCGGCACCGGTCGGCTTTGGGAGCAATGGGG
JMFF004E06+ GGCGCAAGGAGGAGGAGGAGGCGGAGGCGGCGGCACCGGTCGGCTTTGGGAGCAATGGGG
____________________________________________________________
consensus GGCGCAAGGAGGAGGAGGAGGCGGAGGCGGCGGCACCGGTCGGCTTTGGGAGCAATGGGG
. : . : . : . : . : . :
JMSF032L09+ CTGACGTTTTCGTGGTGGCGGCAGAGAAGGCCATGTTTGGAATGCGAGCTAAAGTAT
JMFF013K11+ CTGACGTTTTCGTGGTGGCGGCAGAGAAGGCCATGTTTGGAATGCGAGCTAAAGTAT
JMFF050H12+ CTGACGTTTTCGTGGTGGCGGCAGAGAAGGCCATGTTTGGAATGCGAGCTAAAGTAT
JMFF004E06+ CTGACGTTTTCGTGGTGGCGGCAGAGAAGGCCATGTTTGGAATGCGAGCTAAAGTATACT
____________________________________________________________
consensus CTGACGTTTTCGTGGTGGCGGCAGAGAAGGCCATGTTTGGAATGCGAGCTAAAGTATACT