| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004A03 | Sequence | 583 | 004454 (5) | ref|XP_006353238.1| | 6e-32 | PREDICTED: protease Do-like 10, mitochondrial-like [Solanum tuberosum] | 767 | 011176 (7) | ref|XP_009803816.1| | 4e-117 | PREDICTED: protease Do-like 10, mitochondrial [Nicotiana sylvestris] |
| JMFF010E08 | Sequence | 634 | 004454 (5) | ref|XP_006353238.1| | 9e-43 | PREDICTED: protease Do-like 10, mitochondrial-like [Solanum tuberosum] | 719 | 011176 (7) | ref|XP_009803816.1| | 7e-117 | PREDICTED: protease Do-like 10, mitochondrial [Nicotiana sylvestris] |
| JMFF022C23 | Sequence | 533 | 004454 (5) | ref|XP_006353238.1| | 6e-20 | PREDICTED: protease Do-like 10, mitochondrial-like [Solanum tuberosum] | 742 | 011176 (7) | ref|XP_009803816.1| | 6e-124 | PREDICTED: protease Do-like 10, mitochondrial [Nicotiana sylvestris] |
| JMFF044N22 | Sequence | 646 | 004454 (5) | ref|XP_006353238.1| | 6e-46 | PREDICTED: protease Do-like 10, mitochondrial-like [Solanum tuberosum] | 654 | 011176 (7) | ref|XP_009803816.1| | 1e-88 | PREDICTED: protease Do-like 10, mitochondrial [Nicotiana sylvestris] |
| JMSF032I08 | Sequence | 676 | 004454 (5) | ref|XP_006353238.1| | 1e-50 | PREDICTED: protease Do-like 10, mitochondrial-like [Solanum tuberosum] | 811 | 011176 (7) | ref|XP_009803816.1| | 1e-137 | PREDICTED: protease Do-like 10, mitochondrial [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF032I08+ ATTCTGAACCACTAG
____________________________________________________________
consensus ATTCTGAACCACTAG
. : . : . : . : . : . :
JMSF032I08+ AATAGCCAAGTCACATTCATGGCCAACTGCCTGGACTTCAGCTTTATACTTGGTTGGAGA
JMFF044N22+ ATTCATGGCCAACTGCCTGGACTTCAGCTTTATACTTGGTTGGAGA
JMFF010E08+ CTGCCTGGACTTCAGCTTTATACTTGGTTGGAGA
____________________________________________________________
consensus AATAGCCAAGTCACATTCATGGCCAACTGCCTGGACTTCAGCTTTATACTTGGTTGGAGA
. : . : . : . : . : . :
JMSF032I08+ GCCACGCTTTCTTACTAGTACAAAGGTATGATCGGCCACAACGTGAGCATTTGTCAGGAT
JMFF044N22+ GCCATGCTTTCTTACTAGTACAAAGGTATGATCGGCCACAACGTGAGCATTTGTCAGGAT
JMFF010E08+ GCCATGCTTTCTTACTAGTACAAAGGTATGATCGGCCACAACGTGAGCATTTGTCAGGAT
JMFF004A03+ GTACAAAGGTATGATCGGCCACAACGTGAGCATTTGTCAGGAT
____________________________________________________________
consensus GCCATGCTTTCTTACTAGTACAAAGGTATGATCGGCCACAACGTGAGCATTTGTCAGGAT
. : . : . : . : . : . :
JMSF032I08+ CCTCCTTCCAGGAATAACAAAGCCAGAGCCGGTAGATTCGCGCTGGGATTTATTCTGCCA
JMFF044N22+ CCTCCTTCCAGGAATAACAAAGCCAGAGCCGGTAGATTCGCGCTGGGATTTATTCTGCCA
JMFF010E08+ CCTCCTTCCAGGAATAACAAAGCCAGAGCCGGTAGATTCGCGCTGGGATTTATTCTGCCA
JMFF022C23+ CCAGGAATAACAAAGCCAGAGCCGGTAGATTCGCGCTGGGATTTATTCTGCCA
JMFF004A03+ CCTCCTTCCAGGAATAACAAAGCCAGAGCCGGTAGATTCGCGCTGGGATTTATTCTGCCA
____________________________________________________________
consensus CCTCCTTCCAGGAATAACAAAGCCAGAGCCGGTAGATTCGCGCTGGGATTTATTCTGCCA
. : . : . : . : . : . :
JMSF032I08+ AGGTAGGAAGTAGCTAGGACTGCTGGAAACGGTGAAAATCTTAACCACAGAATCCAATGC
JMFF044N22+ AGGTAGGAAGTAGCTAGGACTGCTGGAAACGGTGAAAATCTTAACCACAGAATCCAATGC
JMFF010E08+ AGGTAGGAAGTAGCTAGGACTGCTGGAAACGGTGAAAATCTTAACCACAGAATCCAATGC
JMFF022C23+ AGGTAGGAAGTAGCTAGGACTGCTGGAAACGGTGAAAATCTTAACCACAGAATCCAATGC
JMFF004A03+ AGGTAGGAAGTAGCTAGGACTGCTGGAAACGGTGAAAATCTTAACCACAGAATCCAATGC
____________________________________________________________
consensus AGGTAGGAAGTAGCTAGGACTGCTGGAAACGGTGAAAATCTTAACCACAGAATCCAATGC
. : . : . : . : . : . :
JMSF032I08+ GAGCTCAATCGCGTAATAAGCATCCGAAATGCTGCTTGTTGTGGAAAGAGACTCCGCCGG
JMFF044N22+ GAGCTCAATCGCGTAATAAGCATCCGAAATGCTGCTTGTTGTGGAAAGAGACTCCGCCGG
JMFF010E08+ GAGCTCAATCGCGTAATAAGCATCCGAAATGCTGCTTGTTGTGGAAAGAGACTCCGCCGG
JMFF022C23+ GAGCTCAATCGCGTAATAAGCATCCGAAATGCTGCTTGTTGTGGAAAGAGACTCCGCCGG
JMFF004A03+ GAGCTCAATCGCGTAATAAGCATCCGAAATGCTGCTTGTTGTGGAAAGAGACTCCGCCGG
____________________________________________________________
consensus GAGCTCAATCGCGTAATAAGCATCCGAAATGCTGCTTGTTGTGGAAAGAGACTCCGCCGG
. : . : . : . : . : . :
JMSF032I08+ CGATTCCGAATTAATTAGTTGAACACCATCCGCGGCGGCGCCGCAGTTATTGTCATCCAA
JMFF044N22+ CGATTCCGAATTAATTAGTTGAACACCATCCGCGGCGGCGCCGCAGTTATTGTCATCCAA
JMFF010E08+ CGATTCCGAATTAATTAGTTGAACACCATCCGCGGCGGCGCCGCAGTTATTGTCATCCAA
JMFF022C23+ CGATTCCGAATTAATTAGTTGAACACCATCCGCGGCGGCGCCGCAGTTATTGTCATCCAA
JMFF004A03+ CGATTCCGAATTAATTAGTTGAACACCATCCGCGGCGGCGCCGCAGTTATTGTCATCCAA
____________________________________________________________
consensus CGATTCCGAATTAATTAGTTGAACACCATCCGCGGCGGCGCCGCAGTTATTGTCATCCAA
. : . : . : . : . : . :
JMSF032I08+ TCCATTTTCCGCGCTTGTGCTCGCAGTGGAAAATAATACGGAGGAACTGTATTTGAACCC
JMFF044N22+ TCCATTTTCCGCGCTTGTGCTCGCAGTGGAAAATAATACGGAGGAACTGTATTTGAACCC
JMFF010E08+ TCCATTTTCCGCGCTTGTGCTCGCAGTGGAAAATAATACGGAGGAACTGTATTTGAACCC
JMFF022C23+ TCCATTTTCCGCGCTTGTGCTCGCAGTGGAAAATAATACGGAGGAACTGTATTTGAACCC
JMFF004A03+ TCCATTTTCCGCGCTTGTGCTCGCAGTGGAAAATAATACGGAGGAACTGTATTTGAACCC
____________________________________________________________
consensus TCCATTTTCCGCGCTTGTGCTCGCAGTGGAAAATAATACGGAGGAACTGTATTTGAACCC
. : . : . : . : . : . :
JMSF032I08+ GTCTGCTGAACAAGGGCGAAATGAATGGTAATAGAAGTTGTCACTGCCACAGCGTGCGGG
JMFF044N22+ GTCTGCTGAACAAGGGCGAAATGAATGGTAATAGAAGTTGTCACTGTCACAGCGTGCGGG
JMFF010E08+ GTCTGCTGAACAAGGGCGAAATGAATGGTAATAGAAGTTGTCACTGTCACAGCGTGCGGG
JMFF022C23+ GTCTGCTGAACAAGGGCGAAATGAATGGTAATAGAAGTTGTCACTGTCACAGCGTGCGGG
JMFF004A03+ GTCTGCTGAACAAGGGCGAAATGAATGGTAATAGAAGTTGTCACTGTCACAGCGTGCGGG
____________________________________________________________
consensus GTCTGCTGAACAAGGGCGAAATGAATGGTAATAGAAGTTGTCACTGTCACAGCGTGCGGG
. : . : . : . : . : . :
JMSF032I08+ GACTTTGCTAGCGGAGGCTACCCGATCGGCGGAAAGTGGGTTGCGGCGGCGAAAGTAGCC
JMFF044N22+ GACTTTGCTAGCGGAGGCTACCCGATCGGCGGAAAGTGGGTTGCGGCGGCGAAAGTAGCC
JMFF010E08+ GACTTTGCTAGCGGAGGCTACCCGATCGGCGGAAAGTGGGTTGCGGCGGCGAAAGTAGCC
JMFF022C23+ GACTTTGCTAGCGGAGGCTACCCGATCGGCGGAAAGTGGGTTGCGGCGGCGAAAGTAGCC
JMFF004A03+ GACTTTGCTAGCGGAGGCTACCCGATCGGCGGAAAGTGGGTTGCGGCGGCGAAAGTAGCC
____________________________________________________________
consensus GACTTTGCTAGCGGAGGCTACCCGATCGGCGGAAAGTGGGTTGCGGCGGCGAAAGTAGCC
. : . : . : . : . : . :
JMSF032I08+ AGCTGAGAGTCTTCGTGCCACACGAAGGGCCGATCGTGTTCCCAGCATCGCTTTTCTGAA
JMFF044N22+ AGCTGAGAGTCTTCGTGCCACACGAAGGGCCGATCGTGTTCCCAGCATCGCTTTTCTGAA
JMFF010E08+ AGCTGAGAGTCTTCGTGCCACACGAAGGGCCGATCGTGTTCCCAGCATCGCTTTTCTGAA
JMFF022C23+ AGCTGAGAGTCTTCGTGCCACACGAAGGGCCGATCGTGTTCCCAGCATCGCTTTTCTGAA
JMFF004A03+ AGCTGAGAGTCTTCGTGCCACACGAAGGGCCGATCGTGTTCCCAGCATCGCTTTTCTGAA
____________________________________________________________
consensus AGCTGAGAGTCTTCGTGCCACACGAAGGGCCGATCGTGTTCCCAGCATCGCTTTTCTGAA
. : . : . : . : . : . :
JMSF032I08+ GCTACCTCTTGAAGCTTGCGCTTTGGACTGGCTGCTTTTGAGCTACCGCTAGTATGCC
JMFF044N22+ GCTACCTCTTGAAGCTTGCGCTTTGGACTGGCTGCTTTTGAGCTACCGCTAGTATGCCGA
JMFF010E08+ GCTACCTCTTGAAGCTTGCGCTTTGGACTGGCTGCTTTTGAGCTACCGCTAGTATGCCGA
JMFF022C23+ GCTACCTCTTGAAGCTTGCGCTTTGGACTGGCTGCTTTTGAGCTACCGCTAGTATGCCGA
JMFF004A03+ GCTACCTCTTGAAGCTTGCGCTTTGGACTGGCTGCTTTTGAGCTACCGCTAGTATGCCGA
____________________________________________________________
consensus GCTACCTCTTGAAGCTTGCGCTTTGGACTGGCTGCTTTTGAGCTACCGCTAGTATGCCGA