Contig 004453:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003P20Sequence181004453 (6)601004453 (6)ref|XP_006363468.1|2e-55PREDICTED: probable histone H2AXb-like [Solanum tuberosum]
JMFF010F19Sequence564004453 (6)ref|XP_006363468.1|1e-55PREDICTED: probable histone H2AXb-like [Solanum tuberosum]
JMFN025D22Sequence508004453 (6)ref|XP_004148883.1|7e-56PREDICTED: histone H2AX-like [Cucumis sativus] ref|XP_004171385.1| PREDICTED: hi
JMSF043A22Sequence797004453 (6)ref|XP_006363468.1|1e-54PREDICTED: probable histone H2AXb-like [Solanum tuberosum]676004453 (6)ref|XP_006363468.1|1e-56PREDICTED: probable histone H2AXb-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF043A22-                       AGAGTTCATTTACAAAGAACAGTCACTCATTCATCATGCCCACAGCA
JMSF043A22+                                                      TCATCATGCCCACAGCA
                      ____________________________________________________________
consensus                          AGAGTTCATTTACAAAGAACAGTCACTCATTCATCATGCCCACAGCA
 
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rJMSF043A22-          CTGCAATTTGACAGTATCTTGCATATGCATCACAGCATTCTCAGACTTGGGTAAACACAT
JMSF043A22+           NTGCAATTTGACAGTATCTTGCATATGCATCACAGCATTCTCAGACTTGGGTAAACACAT
                      ____________________________________________________________
consensus             CTGCAATTTGACAGTATCTTGCATATGCATCACAGCATTCTCAGACTTGGGTAAACACAT
 
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rJMSF043A22-          CAAATCTCAAGCAATGCCAATAAACCCCAAAACAAATGTGCTTGAACCATGATTTGAATT
JMSF043A22+           CAAATNTCAAGCAATGCCAATAAACCCCAAAACAAATGTGCTTGAACCATGATTTGAATT
                      ____________________________________________________________
consensus             CAAATCTCAAGCAATGCCAATAAACCCCAAAACAAATGTGCTTGAACCATGATTTGAATT
 
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rJMSF043A22-          AACCCAATGAATTTGAAATCAAAACCTCAAACAGCAGCATATTGAACCAAAACAGCAATT
JMFN025D22+                                                                      T
JMSF043A22+           AACCCAATGAATTTGAAATCAAAACCTCAAACAGCAGCATATTGAACCAAAACAGCAATT
rJMFF003P20-                                                                     T
                      ____________________________________________________________
consensus             AACCCAATGAATTTGAAATCAAAACCTCAAACAGCAGCATATTGAACCAAAACAGCAATT
 
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rJMSF043A22-          GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
JMFN025D22+           GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
JMSF043A22+           GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
rJMFF003P20-          GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
JMFF010F19+                                               CCCGAGTACAAAAACAGCTATTTT
                      ____________________________________________________________
consensus             GAATTGCTTATATCATATATAAAGTCATTGAATAAACCCGAGTACAAAAACAGCTATTTT
 
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rJMSF043A22-          ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
JMFN025D22+           ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
JMSF043A22+           ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
rJMFF003P20-          ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
JMFF010F19+           ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
                      ____________________________________________________________
consensus             ACAGAAGTCCAACTATCACTTTCTATCCGCTAAACCCCTAAAACTCCTGAGAAGCAGAGC
 
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rJMSF043A22-          CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
JMFN025D22+           CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
JMSF043A22+           CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
rJMFF003P20-          CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
JMFF010F19+           CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
                      ____________________________________________________________
consensus             CAATGTCACCCTTGGCTGAGCCAGCCTTCTTGGGCAACAGATTCTGATGAATGTTAGGCA
 
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rJMSF043A22-          ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
JMFN025D22+           ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
JMSF043A22+           ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
rJMFF003P20-          ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
JMFF010F19+           ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
                      ____________________________________________________________
consensus             ACACACCACCATTAGCAATAGTCACATTGCCCAAAAGCTTGCTCAGCTCCTCATCATTCC
 
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rJMSF043A22-          TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
JMFN025D22+           TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
JMSF043A22+           TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
rJMFF003P20-          TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
JMFF010F19+           TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
                      ____________________________________________________________
consensus             TCACAGCCAGCTGAATATGCCTCGGCACAATCCGATTCTTCTTGTTGTCCCTGGCTGCAT
 
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rJMSF043A22-          TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
JMFN025D22+           TCCCTGGTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
JMSF043A22+           TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
rJMFF003P20-          TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
JMFF010F19+           TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
                      ____________________________________________________________
consensus             TCCCTGCTAATTCCAAAACCTCTGCGGCGAGATACTCGAGTACAGCAGAGAGATACACCG
 
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rJMSF043A22-          GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
JMFN025D22+           GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
JMSF043A22+           GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
rJMFF003P20-          GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
JMFF010F19+           GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
JMFF003P20+                                                                      C
                      ____________________________________________________________
consensus             GAGCTCCGGCACCGACACGCTCGGCATACTTCCCAGCCTTGAGGAAACGCGCGATCCTAC
 
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rJMSF043A22-          CGACGGGGAACTGGAGCCCCGCCTTCGAC                               
JMFN025D22+           CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
JMSF043A22+           CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
rJMFF003P20-          CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
JMFF010F19+           CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
JMFF003P20+           CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
                      ____________________________________________________________
consensus             CGACGGGGAACTGGAGCCCCGCCTTCGACGATCGGGACACCGACTTCGACGCCTTAGGCT
 
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JMFN025D22+           TGCCCCTTCCGGCGCCACCCT                                       
JMSF043A22+           TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
rJMFF003P20-          TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
JMFF010F19+           TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
JMFF003P20+           TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
                      ____________________________________________________________
consensus             TGCCCCTTCCGGCGCCACCCTTTCCCGCTCCTGCGCCGCTAGAACTCATTTTTTACTCAG
 
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JMSF043A22+           CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAG    
rJMFF003P20-          CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAG    
JMFF010F19+           CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAG    
JMFF003P20+           CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAGCGAT
                      ____________________________________________________________
consensus             CAAAAACCCTAATCAAAACTCGTGAATGATTGAAGAAGAATGCGGCTTTTCTGTAGCGAT