Contig 004450:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003B12Sequence373004450 (8)ref|XP_009792957.1|2e-34PREDICTED: DNA-damage-repair/toleration protein DRT102 [Nicotiana sylvestris]
JMFF037A16Sequence560004450 (8)ref|XP_009792957.1|2e-86PREDICTED: DNA-damage-repair/toleration protein DRT102 [Nicotiana sylvestris]383004450 (8)ref|XP_006347794.1|3e-36PREDICTED: DNA-damage-repair/toleration protein DRT102-like [Solanum tuberosum]
JMFN013L20Sequence598004450 (8)ref|XP_009792957.1|8e-95PREDICTED: DNA-damage-repair/toleration protein DRT102 [Nicotiana sylvestris]
JMFN025I08Sequence624004450 (8)ref|XP_009792957.1|8e-95PREDICTED: DNA-damage-repair/toleration protein DRT102 [Nicotiana sylvestris]
JMFN043D06Sequence621004450 (8)ref|XP_009792957.1|1e-101PREDICTED: DNA-damage-repair/toleration protein DRT102 [Nicotiana sylvestris]
JMSF008O04Sequence321004450 (8)ref|XP_009792957.1|4e-39PREDICTED: DNA-damage-repair/toleration protein DRT102 [Nicotiana sylvestris]690004450 (8)ref|XP_006347794.1|8e-102PREDICTED: DNA-damage-repair/toleration protein DRT102-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037A16-                                                             ATTGAGAAG
                      ____________________________________________________________
consensus                                                                ATTGAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037A16-          NCAAGGAAGGTATTATACAAAGCACAAAGGATGTCTATAAGGTTTAATACACACATACAA
rJMSF008O04-                                   AAAGGATGTCTATAAGGTTTAATACACACATACAA
                      ____________________________________________________________
consensus             NCAAGGAAGGTATTATACAAAGCACAAAGGATGTCTATAAGGTTTAATACACACATACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037A16-          ACATACATAGGAGGCATAAAATAAAGGAAGGATCTCATGAGAGTAAAACAGCACATAACA
rJMSF008O04-          ACATACATAGGAGGCATAAAATAAAGGAAGGATCTCATGAGAGTAAAACAGCACATAACA
                      ____________________________________________________________
consensus             ACATACATAGGAGGCATAAAATAAAGGAAGGATCTCATGAGAGTAAAACAGCACATAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037A16-          GTAGAGCTAATTCTCCTTCTGCTGCTTATCCATGGCAGCATTGGCTGCGGCAAGATCCTC
rJMSF008O04-          GTAGAGCTAATTCTCCTTCTGCTGCTTATCCATGGCAGCATTGGCTGCGGCAAGATCCTC
                      ____________________________________________________________
consensus             GTAGAGCTAATTCTCCTTCTGCTGCTTATCCATGGCAGCATTGGCTGCGGCAAGATCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037A16-          GTCCAGGAATATATCCCACTGCCCCTCCCACTTGATGAAGAACTCTGTGTCCTCCAAATA
rJMSF008O04-          GTCCAGGAATATATCCCACTGCCCCTCCCACTTGATGAAGAACTCTGTGTCCTCCAAATA
                      ____________________________________________________________
consensus             GTCCAGGAATATATCCCACTGCCCCTCCCACTTGATGAAGAACTCTGTGTCCTCCAAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037A16-          CTTTACCCGGTGAACATCCCCGGCCGGCGTGAACAAGTAATCCCCCACCCCCAAATCGNA
rJMSF008O04-          CTTTACCCGGTGAACATCCCCGGCCGGCGTGAACAAGTAATCCCCCACCCCCAAATCGTA
                      ____________________________________________________________
consensus             CTTTACCCGGTGAACATCCCCGGCCGGCGTGAACAAGTAATCCCCCACCCCCAAATCGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037A16-          TTTCTCCCCTTTGCTCAAGNTCCACACTGTTTTGCTCCCCTGCAGCACCACCACATCGT 
rJMSF008O04-          TTTCTCCCCTTTGCTCAAGTTCCACACTGTTTTGCTCCCCTGCAGCACCACCACATCGTG
                      ____________________________________________________________
consensus             TTTCTCCCCTTTGCTCAAGTTCCACACTGTTTTGCTCCCCTGCAGCACCACCACATCGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008O04-          CCCAAACGTGTGGTGATGAGCCGGTTCCACACTCCCACCCTTGAACTTCACAAACGCCGA
                      ____________________________________________________________
consensus             CCCAAACGTGTGGTGATGAGCCGGTTCCACACTCCCACCCTTGAACTTCACAAACGCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008O04-          CGTCGGCGTCTCCCGGACTATGCTCATTGACCCGCCCGGCATGATCTCAACGCCTGTAAA
JMFN013L20+                                              CCGGCATGATCTCAACGCCTGTAAA
JMFN043D06+                                              CCGGCATGATCTCAACGCCTGTAAA
                      ____________________________________________________________
consensus             CGTCGGCGTCTCCCGGACTATGCTCATTGACCCGCCCGGCATGATCTCAACGCCTGTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008O04-          TTCCCGATTCTTAACCAGCGAGCATAGCGTACACGGCGTCGTTTCGTTCTCTGCGTTTTT
JMFN013L20+           TTCCCGATTC-TAACCAGCGAGCATAGCGTACACGGCGTCGTTTCGTTCTCTGCGTTTTT
JMFN043D06+           TTCCCGATTCTTAACCAGCGAGCATAGCGTACACGGCGTCGTTTCGTTCTCTGCGTTTTT
JMFN025I08+                      TAACCAGCGAGCATAGCGTACACGGCGTCGTTTCGTTCTCTGCGTTTTT
                      ____________________________________________________________
consensus             TTCCCGATTCTTAACCAGCGAGCATAGCGTACACGGCGTCGTTTCGTTCTCTGCGTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008O04-          AGGGTTTTTCGGGGCTCCGATTTTTGACATTTCGGGGAGGGAACCGGTGAGGAATGATTC
JMFN013L20+           AGGGTTTTTCGGGGCTCCGATTTTTGACATTTCGGGGAGGGAACCGGTGAGGAATGATTC
JMFN043D06+           AGGGTTTTTCGGGGCTCCGATTTTTGACATTTCGGGGAGGGAACCGGTGAGGAATGATTC
JMFN025I08+           AGGGTTTTTCGGGGCTCCGATTTTTGACATTTCGGGGAGGGAACCGGTGAGGAATGATTC
JMFF037A16+                                           CGGGGAGGGAACCGGTGAGGAATGATTC
                      ____________________________________________________________
consensus             AGGGTTTTTCGGGGCTCCGATTTTTGACATTTCGGGGAGGGAACCGGTGAGGAATGATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008O04-          GATATCTGATGGCCAAGGGTTGGAGCTGGAGGCGGGGCAGGGAGATTTGAAGGGAGTGTT
JMFN013L20+           GATATCTGATGGCCAAGGGTTGGAGCTGGAGGCGGGGCAGGGAGATTTGAAGGGAGTGTT
JMFN043D06+           GATATCTGATGGCCAAGGGTTGGAGCTGGAGGCGGGGCAGGGAGATTTGAAGGGAGTGTT
JMFN025I08+           GATATCTGATGGCCAAGGGTTGGAGCTGGAGGCGGGGCAGGGAGATTTGAAGGGAGTGTT
JMFF037A16+           GATATCTGATGGCCAAGGGTTGGAGCTGGAGGCGGGGCAGGGAGATTTGAAGGGAGTGTT
                      ____________________________________________________________
consensus             GATATCTGATGGCCAAGGGTTGGAGCTGGAGGCGGGGCAGGGAGATTTGAAGGGAGTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008O04-          CAGGAAGGAATCTAGGATTTGCGAAGCGACATCGGGGGAAGTGTTCATGCCGGAC     
JMFN013L20+           CAGGAAGGAATCTAGGATTTGCGAAGCGACATCGGGGGAAGTGTTCATGCCGGACACGGC
JMFN043D06+           CAGGAAGGAATCTAGGATTTGCGAAGCGACATCGGGGGAAGTGTTCATGCCGGACACGGC
JMFN025I08+           CAGGAAGGAATCTAGGATTTGCGAAGCGACATCGGGGGAAGTGTTCATGCCGGACACGGC
JMFF037A16+           CAGGAAGGAATCTAGGATTTGCGAAGCGACATCGGGGGAAGTGTTCATGCCGGACACGGC
                      ____________________________________________________________
consensus             CAGGAAGGAATCTAGGATTTGCGAAGCGACATCGGGGGAAGTGTTCATGCCGGACACGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN013L20+           GAGGACGTTGCAATTGTTGATCGATCGGGCGTTGATGGCCTCGCCGGGGGTGAGGCAAGT
JMFN043D06+           GAGGACGTTGCAATTGTTGATCGATCGGGCGTTGATGGCCTCGCCGGGGGTGAGGCAAGT
JMFN025I08+           GAGGACGTTGCAATTGTTGATCGATCGGGCGTTGATGGCCTCGCCGGGGGTGAGGCAAGT
JMFF037A16+           GAGGACGTTGCAATTGTTGATCGATCGGGCGTTGATGGCCTCGCCGGGGGTGAGGCAAGT
JMFF003B12+                                                          GGGTGAGGCAAGT
                      ____________________________________________________________
consensus             GAGGACGTTGCAATTGTTGATCGATCGGGCGTTGATGGCCTCGCCGGGGGTGAGGCAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN013L20+           GGCGGCGTAGACGCCGGGGAATTTGTTGGCGAAGATGGCGACTCCGACGCCGGTGCCGCA
JMFN043D06+           GGCGGCGTAGACGCCGGGGAATTTGTTGGCGAAGATGGCGACTCCGACGCCGGTGCCGCA
JMFN025I08+           GGCGGCGTAGACGCCGGGGAATTTGTTGGCGAAGATGGCGACTCCGACGCCGGTGCCGCA
JMSF008O04+                                      GGCGAAGATGGCGACTCCGACGCCGGTGCCGCA
JMFF037A16+           GGCGGCGTAGACGCCGGGGAATTTGTTGGCGAAGATGGCGACTCCGACGCCGGTGCCGCA
JMFF003B12+           GGCGGCGTAGACGCCGGGGAATTTGTTGGCGAAGATGGCGACTCCGACGCCGGTGCCGCA
                      ____________________________________________________________
consensus             GGCGGCGTAGACGCCGGGGAATTTGTTGGCGAAGATGGCGACTCCGACGCCGGTGCCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN013L20+           GGCGACGAGGCCTCGAGTCTCAATTGATGGATCGTCGGCGGCGGCTTGGCTAAC-GCGGC
JMFN043D06+           GGCGACGAGGCCTCGAGTCTCAATTGATGGATCGTCGGCGGCGGCTTGGCTAAC-GCGGC
JMFN025I08+           GGCGACGAGGCCTCGAGTCTCAATTGATGGATCGTCGGCGGCGGCTTGGCTAAC-GCGGC
JMSF008O04+           GGCGACGAGGCCTCGAGTCTCAATTGATGGATCGTCGGCGGCGGCTTGGCTAAC-GCGGC
JMFF037A16+           GGCGACGAGGCCTCGAGTCTCAATTGATGGATCGTCGGCGGCGGCTTGGCTAAC-GCGGC
JMFF003B12+           GGCGACGAGGCCTCGAGTCTCAATTGATGGATCGTCGGCGGCGGCTTGGCTAACGGAGGC
                      ____________________________________________________________
consensus             GGCGACGAGGCCTCGAGTCTCAATTGATGGATCGTCGGCGGCGGCTTGGCTAAC-GCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN013L20+           GCCCGATTTCTTCGCCGACTGAGTAGTACTTGTCGGTGCCTAGGTCTTCGACGTTGATGT
JMFN043D06+           GCCCGATTTCTTCGCCGACTGAGTAGTACTTGTCGGTGCCTAGGTCTTCGACGTTGATGT
JMFN025I08+           GCCCGATTTCTTCGCCGACTGAGTAGTACTTGTCGGTGCCTAGGTCTTCGACGTTGATGT
JMSF008O04+           GCCCGACTTCTTCGCCGACTGAGTAGTACTTGTCGGTGCCTAGGTCTTCGACGTTGATGT
JMFF037A16+           GCCCGATTTCTTCGCCGACTGAGTAGTACTTGTCGGTGCCTAGGTCTTCGACGTTGATGT
JMFF003B12+           GCCCGATTTCTTCCCCGACTGAGTAGTACTTGTCGGTGCCTAGGTCTTCGACGTTGATGT
                      ____________________________________________________________
consensus             GCCCGATTTCTTCGCCGACTGAGTAGTACTTGTCGGTGCCTAGGTCTTCGACGTTGATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN013L20+           TCAAGGCGCGGAGCTGAGCTACCAGGGTGTCCTTGAGGTCGCTGCCGAAGGAATCGGCTC
JMFN043D06+           TCAAGGCGCGGAGCTGAGCTACCAGGGTGTCCTTGAGGTCGCTGCCGAAGGAATCGGCTC
JMFN025I08+           TCAAGGCGCGGAGCTGAGCTACCAGGGTGTCCTTGAGGTCGCTGCCGAAGGAATCGGCTC
JMSF008O04+           TCAAGGCGCGGAGCTGAGCTACCAGGGTGTCCTTGAGGTCGCTGCCGAAGGAATCGGCTC
JMFF037A16+           TCAAGGCGCGGAGCTGAGCTACCAGGGTGTCCTTGAGGTCGCTGCCGAAGGAATCGGCTC
JMFF003B12+           TCAAGGCGCGGAGCTGAGCTACCAGGGTGTCCTTGAGGTCGCTGCCGAAGGAATCGGCTC
                      ____________________________________________________________
consensus             TCAAGGCGCGGAGCTGAGCTACCAGGGTGTCCTTGAGGTCGCTGCCGAAGGAATCGGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN013L20+           CGGCGATGATCTTAAGGCGGCGATCGGTGGAAGCC                         
JMFN043D06+           CGGCGATGATCTTAAGGCGGCGATCGGTGGAAGCCATGGGGACTGTGTTGAGTGAAG   
JMFN025I08+           CGGCGATGATCTTAAGGCGGCGATCGGTGGAAGCCATGGGGACTGTGTTGAGTGAAGAGA
JMSF008O04+           CGGCGATGATCTTAAGGCGGCGATCGGTGGAAGCCATGGGGACTGTGTTGAGTGAAGAGA
JMFF037A16+           CGGCGATGATCTTAAGGCGGCGATCGGTGGAAGCCATGGGGACTGTGTTGAGTGAAGAGA
JMFF003B12+           CGGCGATGATCTTAAGGCGGCGATCGGTGGAAGCCATGGGGACTGTGTTGAGTGAAGAGA
                      ____________________________________________________________
consensus             CGGCGATGATCTTAAGGCGGCGATCGGTGGAAGCCATGGGGACTGTGTTGAGTGAAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I08+           GTGGGCGCTGGTGAAAGAGTTTTCTTGAGATAGATA                        
JMSF008O04+           GTGGGCGCTGGTGAAAGAGTTTTCTTGAGATAGATAGATAGATTCC              
JMFF037A16+           GTGGGCGCTGGTGAAAGAGTTTTCTTGAGATAGATAGATAGATTCC              
JMFF003B12+           GTGGGCGCTGGTGAAAGAGTTTTCTTGAGATAGATAGATAGATTCCTCGGAGAGAAGATT
                      ____________________________________________________________
consensus             GTGGGCGCTGGTGAAAGAGTTTTCTTGAGATAGATAGATAGATTCCTCGGAGAGAAGATT