Contig 004449:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003B07Sequence329004449 (4)ref|XP_004243593.1|1e-24PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Solanum lyco583004449 (4)ref|XP_009601059.1|3e-61PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Nicotiana tomentosiform
JMFN031H20Sequence566004449 (4)ref|XP_004243593.1|1e-78PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Solanum lyco
JMFN036F12Sequence512004449 (4)ref|XP_010313683.1|5e-78PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Solanum lycopersicum]

Alignment

This contig is upended


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rJMFF003B07-                                        TAGTACATATCCGGCAATGTATAGAGTTCT
                      ____________________________________________________________
consensus                                           TAGTACATATCCGGCAATGTATAGAGTTCT
 
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rJMFF003B07-          GGTCACAAGAGACCCGTCACTGTGAAAGGACGCAAACATCGCCANAAAACACAAGTACAC
                      ____________________________________________________________
consensus             GGTCACAAGAGACCCGTCACTGTGAAAGGACGCAAACATCGCCANAAAACACAAGTACAC
 
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rJMFF003B07-          AAGCTACTAAAAACACTCAGCCTGTACACTACCACGCTGTGCTCTATACNTACAAACTCC
JMFN036F12+                                                             TACAAACTCC
                      ____________________________________________________________
consensus             AAGCTACTAAAAACACTCAGCCTGTACACTACCACGCTGTGCTCTATACNTACAAACTCC
 
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rJMFF003B07-          CANAAACATCGTACACAGCCACAAAAAAAAACACTCACNTCGGAGCANNGTCACCATCCT
JMFN036F12+           CACAAACATCGTACACAGCCACAAAAAAAAACACTCACATCGGAGCAGTGTCACCATCCT
                      ____________________________________________________________
consensus             CACAAACATCGTACACAGCCACAAAAAAAAACACTCACATCGGAGCAGTGTCACCATCCT
 
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rJMFF003B07-          CGTCCANAGGCATAATGTAATTCCGGCAGAGGGGGCACGTAACATTCCAATACTTGAGCC
JMFN036F12+           CGTCCAGAGGCATAATGTAATTCCGGCAGAGGGGGCACGTAACATTCCAATACTTGAGCC
JMFN031H20+                  AGGCATAATGTAATTCCGGCAGAGGGGGCACGTAACATTCCAATACTTGAGCC
                      ____________________________________________________________
consensus             CGTCCAGAGGCATAATGTAATTCCGGCAGAGGGGGCACGTAACATTCCAATACTTGAGCC
 
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rJMFF003B07-          ATTTCTCGAGACACATCGCGTGGAAAACATGCCCGCAAGACAACTGGTTTACCATTGCAT
JMFN036F12+           ATTTCTCGAGACACATGGCGTGGAAAACATGCCCGCAAGACAACTGGTTTACCATTGCAT
JMFN031H20+           ATTTCTCGAGACACATCGCGTGGAAAACATGCCCGCAAGACAACTGGTTTACCATTGCAT
                      ____________________________________________________________
consensus             ATTTCTCGAGACACATCGCGTGGAAAACATGCCCGCAAGACAACTGGTTTACCATTGCAT
 
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rJMFF003B07-          CTGGCGCAAACTCCGANAGGCAGACAGAGCACTTTTGCTCCAGGTGCTCCGAGATGCAGC
JMFN036F12+           CTGGCGCAAACTCCGAGAGGCAGACAGAGCACTTTTGCTCCAGGTGCTCCGAGATGCAGC
JMFN031H20+           CTGGCGCAAACTCCGAGAGGCAGACAGAGCACTTTTGCTCCAGGTGCTCCGAGATGCAGC
                      ____________________________________________________________
consensus             CTGGCGCAAACTCCGAGAGGCAGACAGAGCACTTTTGCTCCAGGTGCTCCGAGATGCAGC
 
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rJMFF003B07-          AGATCNAATCATACGGGACTGCANGATTTCTGCTGCGGAACTCCTCCATGTAAGCCTCCG
JMFN036F12+           AGATCGAATCATACGGGACTGCAGGATTTCTGGTGCGGAACTCCTCCATGTAAGCCTCCG
JMFN031H20+           AGATCGAATCATACGGGACTGCAGGATTTCTGCTGCGGAACTCCTCCATGTAAGCCTCCG
                      ____________________________________________________________
consensus             AGATCGAATCATACGGGACTGCAGGATTTCTGCTGCGGAACTCCTCCATGTAAGCCTCCG
 
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rJMFF003B07-          AGGGAGCTCCCCGACATTCAAAACCGTCCAACGGNCCTTCAACGTTGTACTCCTCCCAGG
JMFN036F12+           AGGGAGCTCCCCGACATTCAAAACCGTCCAACGGCCCTTCAACGTTGTACTCCTCCCAGG
JMFN031H20+           AGGGAGCTCCCCGACATTCAAAACCGTCCAACGGCCCTTCAACGTTGTACTCCTCCCAGG
JMFF003B07+                                              CCTTCAACGTTGTACTCCTCCCAGG
                      ____________________________________________________________
consensus             AGGGAGCTCCCCGACATTCAAAACCGTCCAACGGCCCTTCAACGTTGTACTCCTCCCAGG
 
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rJMFF003B07-          ACGCTATCCGGATGCCAATGACATGAAGGATTGACCGGACTATCTCCTTCACGATGGAGA
JMFN036F12+           ACGCTATCCGGATGCCAATGCCCCGAAGGATTGACCGGACTATCTCCTTCACGATGGAGA
JMFN031H20+           ACGCTATCCGGATGCCAATGACATGAAGGATTGACCGGACTATCTCCTTCACGATGGAGA
JMFF003B07+           ACGCTATCCGGATGCCAATGACATGAAGGATTGACCGGACTATCTCCTTCACGATGGAGA
                      ____________________________________________________________
consensus             ACGCTATCCGGATGCCAATGACATGAAGGATTGACCGGACTATCTCCTTCACGATGGAGA
 
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rJMFF003B07-          TGGATATGGCGGT                                               
JMFN036F12+           TGGATATGGCGGTGTTCACCAGTATCACGCATAGCACACCAGCATCCGTTGGAGTAGGAT
JMFN031H20+           TGGATATGGCGGTGTTCACCAGTATCACGCATAGCACACCAGCATCCGTTGGAGTAGGAT
JMFF003B07+           TGGATATGGCGGTGTTCACCAGTATCACGCATAGCACACCAGCATCCGTTGGAGTAGGAT
                      ____________________________________________________________
consensus             TGGATATGGCGGTGTTCACCAGTATCACGCATAGCACACCAGCATCCGTTGGAGTAGGAT
 
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JMFN036F12+           AAGTTGAGAGACCCATAATCG                                       
JMFN031H20+           AAGTTGAGAGACCCATAATCGACTTCAACCTTATTGTGGCTTGTAAAGCTGAGTATGCAG
JMFF003B07+           AAGTTGAGAGACCCATAATCGACTTCAACCTTATTGTGGCTTGTAAAGCTGAGTATGCAG
                      ____________________________________________________________
consensus             AAGTTGAGAGACCCATAATCGACTTCAACCTTATTGTGGCTTGTAAAGCTGAGTATGCAG
 
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JMFN031H20+           ATTCCTCTGGGCAAAAACCTGTGAGAACAAGCTGGATACAAAGGATCTGCAAAGGGAAGG
JMFF003B07+           ATTCCTNTGGGCAAAAACCTGTGAGAACAAGCTGGATACAAAGGATCTGCAAAGGGAAGG
                      ____________________________________________________________
consensus             ATTCCTCTGGGCAAAAACCTGTGAGAACAAGCTGGATACAAAGGATCTGCAAAGGGAAGG
 
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JMFN031H20+           CAGAAAATGGAAACCATATAAGAAACACAGA                             
JMFF003B07+           CAGAAAATGGAAACCATATAAGAAACACAGAAAAAGCTCACACCAATGAGCCAATCAGAC
                      ____________________________________________________________
consensus             CAGAAAATGGAAACCATATAAGAAACACAGAAAAAGCTCACACCAATGAGCCAATCAGAC