| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002O22 | Sequence | 543 | 004448 (7) | ref|XP_009593905.1| | 5e-74 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 744 | 008936 (6) | ref|XP_010113097.1| | 4e-108 | Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in |
| JMFF009A13 | Sequence | 593 | 004448 (7) | ref|XP_009593905.1| | 5e-90 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 698 | 008936 (6) | ref|XP_010113097.1| | 1e-115 | Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in |
| JMFF013K15 | Sequence | 595 | 004448 (7) | ref|XP_009593905.1| | 8e-91 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 756 | 008936 (6) | ref|XP_010113097.1| | 2e-117 | Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in |
| JMFF021D10 | Sequence | 536 | 004448 (7) | ref|XP_009593905.1| | 3e-90 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 742 | 008936 (6) | ref|XP_010113097.1| | 3e-111 | Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in |
| JMFF031G07 | Sequence | 422 | 004448 (7) | gb|AFJ42571.1| | 2e-92 | elongation initiation factor 4A [Sesamum indicum] | |||||
| JMFN033C05 | Sequence | 606 | 004448 (7) | ref|XP_009593905.1| | 4e-96 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | |||||
| JMSF039D04 | Sequence | 674 | 004448 (7) | ref|XP_009593905.1| | 7e-118 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 815 | 008936 (6) | gb|AAD20980.1| | 6e-136 | translation initiation factor 4A2 [Zea mays] |
This contig is upended
. : . : . : . : . : . :
JMFF031G07+ AATCCTCTTGACAGCATTTCATCAGCCTCATCCAATACAAACATCTTAA
____________________________________________________________
consensus AATCCTCTTGACAGCATTTCATCAGCCTCATCCAATACAAACATCTTAA
. : . : . : . : . : . :
JMFF031G07+ TGTAATCAGGACGAAGGGACTGCCTACGCAACATGTCAAAGACACGCCCAGGAGTTCCGA
JMSF039D04+ GGACGAAGGGACTGCCTACGCAACATGTCAAAGACACGCCCAGGAGTTCCGA
____________________________________________________________
consensus TGTAATCAGGACGAAGGGACTGCCTACGCAACATGTCAAAGACACGCCCAGGAGTTCCGA
. : . : . : . : . : . :
JMFF031G07+ CAACTACATGAACTCCACTGGAAAGAATGCGTTGGTCCTCACGGACACTGGTTCCTCCAA
JMFN033C05+ TGGTCCTCACGGACACTGGTTCCTCCAA
JMSF039D04+ CAACTACATGAACTCCACTGGAAAGAATGCGTTGGTCCTCACGGACACTGGTTCCTCCAA
JMFF021D10+ AA
JMFF013K15+ TCCAA
JMFF009A13+ AA
____________________________________________________________
consensus CAACTACATGAACTCCACTGGAAAGAATGCGTTGGTCCTCACGGACACTGGTTCCTCCAA
. : . : . : . : . : . :
JMFF031G07+ CACAAGCATGTACCTTGACACCAAGATAGTCTCCCAGTGCCCGCATAACCTTCTCAATCT
JMFN033C05+ CACAAGCATGTACCTTGACACCAAGATAGTCTCCCAGTGCCCGCATAACCTTCTCAATCT
JMSF039D04+ CACAAGCATGTACCTTGACACCAAGATAGTCTCCCAGTGCCCGCATAACCTTCTCAATCT
JMFF021D10+ CACAAGCATGTACCTTGACACCAAGATAGTCTCCCAGTGCCCGCATAACCTTCTCAATCT
JMFF013K15+ CACAAGCATGTACCTTGACACCAAGATAGTCTCCCAGTGCCCGCATAACCTTCTCAATCT
JMFF009A13+ CACAAGCATGTACCTTGACACCAAGATAGTCTCCCAGTGCCCGCATAACCTTCTCAATCT
JMFF002O22+ TCT
____________________________________________________________
consensus CACAAGCATGTACCTTGACACCAAGATAGTCTCCCAGTGCCCGCATAACCTTCTCAATCT
. : . : . : . : . : . :
JMFF031G07+ GCTGTGCAAGTTCACGAGTCGGTGCCAAGACCAGAGCTTGACATTCCACTTTGTCATAGT
JMFN033C05+ GCTGTGCAAGTTCACGAGTCGGTGCCAAGACCAGAGCTTGACATTCCACTTTGTCATAGT
JMSF039D04+ GCTGTGCAAGTTCACGAGTCGGTGCCAAGACCAGAGCTTGACATTCCACTTTGTCATAGT
JMFF021D10+ GCTGTGCAAGTTCACGAGTCGGTGCCAAGACCAGAGCTTGACATTCCACTTTGTCATAGT
JMFF013K15+ GCTGTGCAAGTTCACGAGTCGGTGCCAAGACCAGAGCTTGACATTCCACTTTGTCATAGT
JMFF009A13+ GCTGTGCAAGTTCACGAGTCGGTGCCAAGACCAGAGCTTGACATTCCACTTTGTCATAGT
JMFF002O22+ GCTGTGCAAGTTCACGAGTCGGTGCCAAGACCAGAGCTTGACATTCCACTTTGTCATAGT
____________________________________________________________
consensus GCTGTGCAAGTTCACGAGTCGGTGCCAAGACCAGAGCTTGACATTCCACTTTGTCATAGT
. : . : . : . : . : . :
JMFF031G07+ CGAGCTGTTGAAGAACACCCGAGCAGAAAGTAGCAGTCTTCCCAGTTCCAGATTGAGCCT
JMFN033C05+ CGAGCTGTTGAAGAACACCCGAGCAGAAAGTAGCAGTCTTCCCAGTTCCAGATTGAGCCT
JMSF039D04+ CGAGCTGTTGAAGAACACCCGAGCAGAAAGTAGCAGTCTTCCCAGTTCCAGATTGAGCCT
JMFF021D10+ CGAGCTGTTGAAGAACACCCGAGCAGAAAGTAGCAGTCTTCCCAGTTCCAGATTGAGCCT
JMFF013K15+ CGAGCTGTTGAAGAACACCCGAGCAGAAAGTAGCAGTCTTCCCAGTTCCAGATTGAGCCT
JMFF009A13+ CGAGCTGTTGAAGAACACCCGAGCAGAAAGTAGCAGTCTTCCCAGTTCCAGATTGAGCCT
JMFF002O22+ CGAGCTGTTGAAGAACACCCGAGCAGAAAGTAGCAGTCTTCCCAGTTCCAGATTGAGCCT
____________________________________________________________
consensus CGAGCTGTTGAAGAACACCCGAGCAGAAAGTAGCAGTCTTCCCAGTTCCAGATTGAGCCT
. : . : . : . : . : . :
JMFF031G07+ GCTGAATTACATCGAGACCATTGCAGAATGGAACAATACCTCTTTGCTGAATTGCTGAGG
JMFN033C05+ GCTGAATTACATCGAGACCATTGCAGAATGGAACAATACCTCTTTGCTGAATTGCTGAGG
JMSF039D04+ GCTGAATTACATCGAGACCATTGCAGAATGGAACAATACCTCTTTGCTGAATTGCTGAGG
JMFF021D10+ GCTGAATTACATCGAGACCATTGCAGAATGGAACAATACCTCTTTGCTGAATTGCTGAGG
JMFF013K15+ GCTGAATTACATCGAGACCATTGCAGAATGGAACAATACCTCTTTGCTGAATTGCTGAGG
JMFF009A13+ GCTGAATTACATCGAGACCATTGCAGAATGGAACAATACCTCTTTGCTGAATTGCTGAGG
JMFF002O22+ GCTGAATTACATCGAGACCATTGCAGAATGGAACAATACCTCTTTGCTGAATTGCTGAGG
____________________________________________________________
consensus GCTGAATTACATCGAGACCATTGCAGAATGGAACAATACCTCTTTGCTGAATTGCTGAGG
. : . : . : . : . : . :
JMFF031G07+ GCTTTTCAAAACC
JMFN033C05+ GCTTTTCAAAACCATATGCATAAATTCCCCTGAGAAGGTTCTCCTTTAAACCCATGGCAT
JMSF039D04+ GCTTTTCAAAACCATATGCATAAATTCCCCTGAGAAGGTTCTCCTTTAAACCCATGGCAT
JMFF021D10+ GCTTTTCAAAACCATATGCATAAATTCCCCTGAGAAGGTTCTCCTTTAAACCCATGGCAT
JMFF013K15+ GCTTTTCAAAACCATATGCATAAATTCCCCTGAGAAGGTTCTCCTTTAAACCCATGGCAT
JMFF009A13+ GCTTTTCAAAACCATATGCATAAATTCCCCTGAGAAGGTTCTCCTTTAAACCCATGGCAT
JMFF002O22+ GCTTTTCAAAACCATATGCATAAATTCCCCTGAGAAGGTTCTCCTTTAAACCCATGGCAT
____________________________________________________________
consensus GCTTTTCAAAACCATATGCATAAATTCCCCTGAGAAGGTTCTCCTTTAAACCCATGGCAT
. : . : . : . : . : . :
JMFN033C05+ CAAAACTGTCATGAACTTCATCATAAGAGGTGAAGAACTCTTGCCCTTCAACGGTCAGCA
JMSF039D04+ CAAAACTGTCATGAACTTCATCATAAGAGGTGAAGAACTCTTGCCCTTCAACGGTCAGCA
JMFF021D10+ CAAAACTGTCATGAACTTCATCATAAGAGGTGAAGAACTCTTGCCCTTCAACGGTCAGCA
JMFF013K15+ CAAAACTGTCATGAACTTCATCATAAGAGGTGAAGAACTCTTGCCCTTCAACGGTCAGCA
JMFF009A13+ CAAAACTGTCATGAACTTCATCATAAGAGGTGAAGAACTCTTGCCCTTCAACGGTCAGCA
JMFF002O22+ CAAAACTGTCATGAACTTCATCATAAGAGGTGAAGAACTCTTGCCCTTCAACGGTCAGCA
____________________________________________________________
consensus CAAAACTGTCATGAACTTCATCATAAGAGGTGAAGAACTCTTGCCCTTCAACGGTCAGCA
. : . : . : . : . : . :
JMFN033C05+ ACTCCTGCATTTTGGCATCATACTGACGAGCATCAAACTGGGATCCCTCTGGTGCTGCAC
JMSF039D04+ ACTCCTGCATTTTGGCATCATACTGACGAGCATCAAACTGGGATCCCTCTGGTGCTGCAC
JMFF021D10+ ACTCCTGCATTTTGGCATCATACTGACGAGCATCAAACTGGGATCCCTCTGGTGCTGCAC
JMFF013K15+ ACTCCTGCATTTTGGCATCATACTGACGAGCATCAAACTGGGATCCCTCTGGTGCTGCAC
JMFF009A13+ ACTCCTGCATTTTGGCATCATACTGACGAGCATCAAACTGGGATCCCTCTGGTGCTGCAC
JMFF002O22+ ACTCCTGCATTTTGGCATCATACTGACGAGCATCAAACTGGGATCCCTCTGGTGCTGCAC
____________________________________________________________
consensus ACTCCTGCATTTTGGCATCATACTGACGAGCATCAAACTGGGATCCCTCTGGTGCTGCAC
. : . : . : . : . : . :
JMFN033C05+ CTGCCATAACTGAAGACGAAGTGAAATGGAGTGATGAGAGAGAAAGTGAAAGAGCGAAAG
JMSF039D04+ CTGCCATAACTGAAGACGAAGTGAAATGGAGTGATGAGAGAGAAAGTGAAAGAGCGAAAG
JMFF021D10+ CTGCCATAACTGAAGACGAAGTGAAATGGAGTGATGAGAGAGAAAGTGAAAGAGCGAAAG
JMFF013K15+ CTGCCATAACTGAAGACGAAGTGAAATGGAGTGATGAGAGAGAAAGTGAAAGAGCGAAAG
JMFF009A13+ CTGCCATAACTGAAGACGAAGTGAAATGGAGTGATGAGAGAGAAAGTGAAAGAGCGAAAG
JMFF002O22+ CTGCCATAACTGAAGACGAAGTGAAATGGAGTGATGAGAGAGAAAGTGAAAGAGCGAAAG
____________________________________________________________
consensus CTGCCATAACTGAAGACGAAGTGAAATGGAGTGATGAGAGAGAAAGTGAAAGAGCGAAAG
. : . : . : . : . : . :
JMFN033C05+ AAGTGTGGCGAGAGAGAAATTAGGGTTTTCCCAAACTCCTCGGATCTAAGCCTTGGAGTT
JMSF039D04+ AAGTGTGGCGAGAGAGAAATTAGGGTTTTCCCAAACTCCTCGGATCTAAGCCTTGGAGTT
JMFF021D10+ AAGTGTGGCGAGAGAGAAATTAGGGTTTTCCCAAACTCCTCGGATCTAAGCCTT
JMFF013K15+ AAGTGTGGCGAGAGAGAAATTAGGGTTTTCCCAAACTCCTCGGATCTAAGCCTTGGAGTT
JMFF009A13+ AAGTGTGGCGAGAGAGAAATTAGGGTTTTCCCAAACTCCTCGGATCTAAGCCTTGGAGTT
JMFF002O22+ AAGTGTGGCGAGAGAGAAATTAGGGTTTTCCCAAACTCCTCGGATCTAAGCCTTGGAGTT
____________________________________________________________
consensus AAGTGTGGCGAGAGAGAAATTAGGGTTTTCCCAAACTCCTCGGATCTAAGCCTTGGAGTT
. : . : . : . : . : . :
JMFN033C05+ GAGGAAGAAGAGA
JMSF039D04+ GAGGAAGAAGAGAGTGAGGCGC
JMFF013K15+ GAGGAAGAAGAGAGTGAGGCGCGAGAGAAAACTACGGTAAGGGTTCCA
JMFF009A13+ GAGGAAGAAGAGAGTGAGGCGCGAGAGAAAACTACGGTAAGGGTTCCA
JMFF002O22+ GAGGAAGAAGAGAGTGAGGCGCGAGAGAAAACTACGGTAAGGGTTCCACGCAGGGAAATC
____________________________________________________________
consensus GAGGAAGAAGAGAGTGAGGCGCGAGAGAAAACTACGGTAAGGGTTCCACGCAGGGAAATC