Contig 004442:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002F21Sequence569004442 (15)ref|XP_009612959.1|2e-78PREDICTED: actin-depolymerizing factor 2-like [Nicotiana tomentosiformis]679004442 (15)ref|XP_009612959.1|4e-87PREDICTED: actin-depolymerizing factor 2-like [Nicotiana tomentosiformis]
JMFF046M13Sequence635004442 (15)gb|EPS73519.1|2e-84actin-depolymerizing factor, partial [Genlisea aurea]547004442 (15)gb|EPS73519.1|2e-46actin-depolymerizing factor, partial [Genlisea aurea]
JMFF051N04Sequence622004442 (15)ref|XP_009612959.1|1e-88PREDICTED: actin-depolymerizing factor 2-like [Nicotiana tomentosiformis]267004442 (15)
JMFN008J18Sequence620004442 (15)gb|EPS73519.1|2e-87actin-depolymerizing factor, partial [Genlisea aurea]
JMFN008L04Sequence618004442 (15)ref|XP_009612959.1|1e-88PREDICTED: actin-depolymerizing factor 2-like [Nicotiana tomentosiformis]
JMFN009O16Sequence535004442 (15)ref|XP_003594440.1|9e-54Actin depolymerizing factor [Medicago truncatula] gb|AES64691.1| cofilin/actin-d
JMFN015D16Sequence625004442 (15)ref|XP_009612959.1|3e-88PREDICTED: actin-depolymerizing factor 2-like [Nicotiana tomentosiformis]
JMFN018F16Sequence622004442 (15)ref|XP_009612959.1|2e-88PREDICTED: actin-depolymerizing factor 2-like [Nicotiana tomentosiformis]
JMFN039A09Sequence642004442 (15)ref|XP_009612959.1|2e-88PREDICTED: actin-depolymerizing factor 2-like [Nicotiana tomentosiformis]
JMFN039B22Sequence622004442 (15)ref|XP_003594440.1|2e-63Actin depolymerizing factor [Medicago truncatula] gb|AES64691.1| cofilin/actin-d
JMSF031O02Sequence656004442 (15)ref|XP_009612959.1|2e-88PREDICTED: actin-depolymerizing factor 2-like [Nicotiana tomentosiformis]
JMSF051B14Sequence138004442 (15)

Alignment

This contig is upended


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rJMFF051N04-                                     AATTCAAAAGTTGCCAGTCATCCAGGCCAGATT
                      ____________________________________________________________
consensus                                        AATTCAAAAGTTGCCAGTCATCCAGGCCAGATT
 
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rJMFF051N04-          AGCAATCACCATCGGCATTGAAAATAAAAAAAGAAAAAACAAACAAACCATAATTGTTGA
JMFN009O16+                                                                  GTTGA
JMFN039B22+                                                                  GTTGA
rJMFF046M13-                                                                 GTTGA
rJMFF002F21-                                                              ATTGTTGA
                      ____________________________________________________________
consensus             AGCAATCACCATCGGCATTGAAAATAAAAAAAGAAAAAACAAACAAACCATAATTGTTGA
 
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rJMFF051N04-          TTGGTACCCAACCAAAAAATTCATTACACGCATTCA--ACACCAAACCATCATATGAATA
JMFN009O16+           TTGGTACCCAACCAAAGAATTCATTACACGCATTCAACACACCAAACCATCATATG-ATA
JMFN039B22+           TTGGTACCCAACCAAAGAATTCATTACACGCATTCAACACACCAAACCATCATATG-ATA
rJMFF046M13-          TTGGTACCCAACCAAAGAATTCATTACACGCATTCAACACACCAAACCATCATATG-ATA
rJMFF002F21-          TTGGTACCCAACCAAAGAATTCATTACACGCATTCAACACACCAAACCATCATATG-ATA
                      ____________________________________________________________
consensus             TTGGTACCCAACCAAAGAATTCATTACACGCATTCAACACACCAAACCATCATATG-ATA
 
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rJMFF051N04-          ATGTCAAAAGGACATAATTTGTTTAAATGGAGATTAAAATAGTAAAATCGACAACAGACT
JMFN009O16+           ATGTCAAAAGGACATAATTTGTTTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
JMFN039B22+           ATGTCAAAAGGACATAATTTGTTTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
rJMFF046M13-          ATGTCAAAGGGACATAATTTGTTTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
rJMFF002F21-          ATGTCAAAGGGACATAATTTGTTTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
JMFN008L04+                             TTGTTTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
JMFN015D16+                                 TTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
JMFN018F16+                         TAATTTGTTTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
JMFN039A09+           ATGTCAAAAGGACATAATTGTNNTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
JMFF051N04+                                           ATTAAAATAGTAAATTCGACAACAGGCT
                      ____________________________________________________________
consensus             ATGTCAAAAGGACATAATTTGTTTAGATGGAGATTAAAATAGTAAAATCGACAACAGACT
 
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rJMFF051N04-          AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTC    
JMFN009O16+           AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
JMFN039B22+           AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
rJMFF046M13-          AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
rJMFF002F21-          AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
JMFN008L04+           AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
JMFN015D16+           AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
JMFN018F16+           AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
JMFN039A09+           AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
JMFF051N04+           AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
JMSF031O02+                    TCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
                      ____________________________________________________________
consensus             AATATCACATCTTAGCGAGGCAGGCAGTGCAGTCCCACAAACTATAAACATTTCTCAAGG
 
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JMFN009O16+           AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
JMFN039B22+           AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
rJMFF046M13-          AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAAAAAATTTTATTTAATTTGC
rJMFF002F21-          AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
JMFN008L04+           AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
JMFN015D16+           AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
JMFN018F16+           AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
JMFN039A09+           AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
JMFF051N04+           AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
JMSF031O02+           AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
JMFN008J18+                     AGAAGGCGTACATCAAGCTNTGCAGTACTAGAGAATTTTATTTAATNTGC
JMFF046M13+                                ATCAAGCTTTGCAGTACTAGAGAATTTTATNTAATTTGC
                      ____________________________________________________________
consensus             AGTAAAGCAAAGAAGGCGTACATCAAGCTTTGCAGTACTAGAGAATTTTATTTAATTTGC
 
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JMFN009O16+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFN039B22+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
rJMFF046M13-          GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
rJMFF002F21-          GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFN008L04+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFN015D16+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFN018F16+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFN039A09+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFF051N04+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMSF031O02+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFN008J18+           GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFF046M13+           GCGGC-TTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
JMFF002F21+                                          GTTGGATCAGTGGCTTGCAGCTCCACCTG
                      ____________________________________________________________
consensus             GCGGCTTTTGAAGACGTCGAGATCCATCTCAGTTGGATCAGTGGCTTGCAGCTCCACCTG
 
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JMFN009O16+           AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFN039B22+           AATGCCATCCAATTCCATCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
rJMFF046M13-          AATGCCACCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
rJMFF002F21-          AATGCCACCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFN008L04+           AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFN015D16+           AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFN018F16+           AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFN039A09+           AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFF051N04+           AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMSF031O02+           AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFN008J18+           AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFF046M13+           AATGCCACCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
JMFF002F21+           AATGCCACCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
                      ____________________________________________________________
consensus             AATGCCATCCAATTCCCTCTTAAATCTGTCCTTGGAGCTTGCATAAATCATTTTGCTTCT
 
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JMFN009O16+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFN039B22+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
rJMFF046M13-          AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
rJMFF002F21-          AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFN008L04+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFN015D16+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFN018F16+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFN039A09+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFF051N04+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMSF031O02+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFN008J18+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFF046M13+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
JMFF002F21+           AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
                      ____________________________________________________________
consensus             AACCTTTGCAGTATCAGGAGACCAGGCAATAAAGAAAATCCTGCTCTTTGGGACACTCTC
 
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JMFN009O16+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFN039B22+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
rJMFF046M13-          TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
rJMFF002F21-          TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFN008L04+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFN015D16+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFN018F16+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFN039A09+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFF051N04+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMSF031O02+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFN008J18+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFF046M13+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
JMFF002F21+           TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
                      ____________________________________________________________
consensus             TTCTGTTAGAAAATCAAAATCATAGACAGCATATCGGCATTCATCAGCAGGCAGGCATGC
 
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JMFN009O16+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCAC                            
JMFN039B22+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
rJMFF046M13-          AG                                                          
rJMFF002F21-          AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMFN008L04+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMFN015D16+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMFN018F16+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMFN039A09+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMFF051N04+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMSF031O02+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMFN008J18+           AGTGAAGTCGTCATAGCTCTGAGCCGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMFF046M13+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
JMFF002F21+           AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
                      ____________________________________________________________
consensus             AGTGAAGTCGTCATAGCTCTGAGCTGGCTCACCCAGCTTTTCCACAATTACCTGCTTTTG
 
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JMFN039B22+           CTTCTCCTCAATCTTA                                            
rJMFF002F21-          CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMFN008L04+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMFN015D16+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMFN018F16+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMFN039A09+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMFF051N04+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMSF031O02+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMFN008J18+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMFF046M13+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
JMFF002F21+           CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
                      ____________________________________________________________
consensus             CTTCTCCTCAATCTTATATACTATAAACCGGTAAGCCCTCTTTGTTTTCAACTCCAAAAA
 
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rJMFF002F21-          TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMFN008L04+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMFN015D16+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMFN018F16+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMFN039A09+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMFF051N04+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMSF031O02+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMFN008J18+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMFF046M13+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
JMSF051B14+                                                             TGGTGGTGCG
JMFF002F21+           TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
                      ____________________________________________________________
consensus             TTTCAGTTTGCAGTCATCATGGACTGCCATGCCTGATGCAGAATTAGCCATGGTGGTGCG
 
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rJMFF002F21-          CGGTGATCGGAG                                                
JMFN008L04+           CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGA                        
JMFN015D16+           CGGTGATCGGAGAAAGATCGGT                                      
JMFN018F16+           CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGA                        
JMFN039A09+           CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGAGATATA                  
JMFF051N04+           CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGAGATATAGAGCTTTAGGGC      
JMSF031O02+           CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGAGATATAGAGCTTTAGGGCAAAGAA
JMFN008J18+           CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGAGATATAGAGCTTTAGGGCAAAGAA
JMFF046M13+           CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGAGATATAGAGCTTTAGGGCAAAGAA
JMSF051B14+           CGGTGATCGGAGAAAGNTCGGTGAGATTTGAGCGGAGATATAGAGCTNTAGGGCAAAGAA
JMFF002F21+           CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGAGATATAGAGCTTTAGGGCAAAGAA
                      ____________________________________________________________
consensus             CGGTGATCGGAGAAAGATCGGTGAGATTTGAGCGGAGATATAGAGCTTTAGGGCAAAGAA
 
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JMSF031O02+           GAGATATTTCTGTGCGCGTATATATAGGGGAGCGCGTTTGAGACCGGAAAAGACTTTGCT
JMFN008J18+           GAGATATTTCTGTGCGCGTATATATAGGGGAGCGCGTTTGAGACCGGAAAAGACTTTGCT
JMFF046M13+           GAGATATTTCTGTGCGCGTATATATAGGGGAGCGCGTTTGAGACCGGAAAAGACTTTGCT
JMSF051B14+           GAGATATTTNTGTGCGCGTATATNTAGGGGAGCGCGTTTGAGACCGGAAAAGACTTNGCT
JMFF002F21+           GAGATATTTCTGTGCGCGTATATATAGGGGAGCGCGTTTGAGACCGGAAAAGACTTTGCT
                      ____________________________________________________________
consensus             GAGATATTTCTGTGCGCGTATATATAGGGGAGCGCGTTTGAGACCGGAAAAGACTTTGCT
 
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JMSF031O02+           TCAC                                                        
JMFN008J18+           TCACACAGATAAGCAAAGCGGAGAAAGAAG                              
JMFF046M13+           TCACACAGATAAGCAAAGCGGAGAAAGAAGAAAAAGAGAATTGAGGAATTGAATTCC   
JMSF051B14+           TC                                                          
JMFF002F21+           TCACACAGATAAGCAAAGCGGAGAAAGAAGAAAAAGAGAATTGAGGAATTGAATTCCCCA
                      ____________________________________________________________
consensus             TCACACAGATAAGCAAAGCGGAGAAAGAAGAAAAAGAGAATTGAGGAATTGAATTCCCCA