Contig 004436:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001M13Sequence486004436 (5)ref|XP_011073578.1|4e-15PREDICTED: probable inactive receptor kinase At4g23740 [Sesamum indicum]677010980 (5)gb|KDP25339.1|5e-81hypothetical protein JCGZ_20495 [Jatropha curcas]
JMFF003L15Sequence535004436 (5)ref|XP_011073578.1|9e-53PREDICTED: probable inactive receptor kinase At4g23740 [Sesamum indicum]695010980 (5)gb|KDP25339.1|1e-81hypothetical protein JCGZ_20495 [Jatropha curcas]
JMFF004I18Sequence662004436 (5)ref|XP_011073578.1|1e-49PREDICTED: probable inactive receptor kinase At4g23740 [Sesamum indicum]704010980 (5)gb|KDP25339.1|1e-88hypothetical protein JCGZ_20495 [Jatropha curcas]
JMFF007K21Sequence575004436 (5)ref|XP_006343895.1|2e-61PREDICTED: probable inactive receptor kinase At4g23740-like [Solanum tuberosum]699010980 (5)gb|KDP25339.1|1e-81hypothetical protein JCGZ_20495 [Jatropha curcas]
JMFF027F19Sequence402004436 (5)ref|XP_004245544.1|9e-18PREDICTED: probable inactive receptor kinase At4g23740 [Solanum lycopersicum]655010980 (5)gb|KDP25339.1|9e-73hypothetical protein JCGZ_20495 [Jatropha curcas]

Alignment

This contig is upended


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JMFF003L15+                                                             AAATCCAAAG
JMFF007K21+                     GTTAGACAAGTTAAGACTGGTGAGATTCTTCCAAACCGAGAAATCCAAAG
JMFF004I18+                                                                     AG
                      ____________________________________________________________
consensus                       GTTAGACAAGTTAAGACTGGTGAGATTCTTCCAAACCGAGAAATCCAAAG
 
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JMFF003L15+           GCAAAGGGCCAGAGAAATTGTTGAACTGCAAGTAAAGATAGGAGAGGTTCTTCAAGTTAA
JMFF007K21+           GCAAAGGGCCAGAGAAATTGTTGAACTGCAAGTAAAGATAGGAGAGGTTCTTCAAGTTAA
JMFF004I18+           GCAAAGGGCCAGAGAAATTGTTGAACTGCAAGTAAAGATAGGAGAGGTTCTTCAAGTTAA
                      ____________________________________________________________
consensus             GCAAAGGGCCAGAGAAATTGTTGAACTGCAAGTAAAGATAGGAGAGGTTCTTCAAGTTAA
 
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JMFF003L15+           CAAAATCTAGAGGGAAGTTCCCAGAAATACCATTGGATCTGAGGCTCAAGATCTGCAATG
JMFF007K21+           CAAAATCTAGAGGGAAGTTCCCAGAAATACCATTGGATCTGAGGCTCAAGATCTGCAATG
JMFF004I18+           CAAAATCTAGAGGGAAGTTCCCAGAAATACCATTGGATCTGAGGCTCAAGATCTGCAATG
                      ____________________________________________________________
consensus             CAAAATCTAGAGGGAAGTTCCCAGAAATACCATTGGATCTGAGGCTCAAGATCTGCAATG
 
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JMFF003L15+           CTGACAAACGGCCGATAGTATTCCCAGGAATTGGGCCGTGAAATCCCACCCCGGGCAGCC
JMFF007K21+           CTGACAAACGGCCGATAGTATTCCCAGGAATTGGGCCGTGAAATCCCACCCCGGGCAGCC
JMFF027F19+              ACAAACGGCCGATAGTATTCCCAGGAATTGGGCCGTGAAATCCCACCCCGGGCAGCC
JMFF004I18+           CTGACAAACGGCCGATAGTATTCCCAGGAATTGGGCCGTGAAATCCCACCCCGGGCAGCC
JMFF001M13+                                                                 GCAGCC
                      ____________________________________________________________
consensus             CTGACAAACGGCCGATAGTATTCCCAGGAATTGGGCCGTGAAATCCCACCCCGGGCAGCC
 
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JMFF003L15+           TCAATGCCACCACTCTAGACCCATCTTCACTGCACCCCACTCCAGTCCAGTTCATGCAAA
JMFF007K21+           TCAATGCCACCACTCTAGACCCATCTTCACTGCACCCCACTCCAGTCCAGTTCATGCAAA
JMFF027F19+           TCAATGCCACCACTNTAGACCCATCTTCACTGCACCCCACTCCAGTCCAGTTCATGCAAA
JMFF004I18+           CCAATGCCACCACTCTAGACCCATCTTCACTGCACCCCACTCCAGTCCAGTTCATGCAAA
JMFF001M13+           CCAATGCCACCACTCTAGACCCATCTTCACTGCACCCCACTCCAGTCCAGTTCATGCAAA
                      ____________________________________________________________
consensus             TCAATGCCACCACTCTAGACCCATCTTCACTGCACCCCACTCCAGTCCAGTTCATGCAAA
 
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JMFF003L15+           CCGAGAGCTCCTCGTTCCAGTTCAGAGATCTTAAATGGCGAAGGTTGTTCACAAACTCCA
JMFF007K21+           CCGAGAGCTCCTCGTTCCAGTTCAGAGATCTTAAATGGCGAAGGTTGTTCACAAACTCCA
JMFF027F19+           CCGAGAGCTCCTCGTTCCAGTTCAGAGATNTTAAATGGNGAAGGTTGTTCACAAACTCCA
JMFF004I18+           CCGAGAGCTCCTCGTTCCAGTTCAGAGATCTTAAATGGCGAAGGTTGTTCACAAACTCCA
JMFF001M13+           CCGAGAGCTCCTCGTTCCAGTTCAGAGATCTTAAATGGCGAAGGTTGTTCACAAACTCCA
                      ____________________________________________________________
consensus             CCGAGAGCTCCTCGTTCCAGTTCAGAGATCTTAAATGGCGAAGGTTGTTCACAAACTCCA
 
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JMFF003L15+           GCAACGCTTGCTTGTCATTCTCAACGAGACTGAAACCGCCTCGTGCCGCCACAAAAACCC
JMFF007K21+           GCAACGCTTGCTTGTCATTCTCAACGAGACTGAAACCGCCTCGTGCCGCCACAAAAACCC
JMFF027F19+           GCAACGCTTGCTTGTCATTCTCAACGAGACTGAAACCGCCTCGTGCCGCCACAAAAACCC
JMFF004I18+           GCAACGCTTGCTTGTCATTCTCAACGAGACTGAAACCGCCTCGTGCCGCCACAAAAACCC
JMFF001M13+           GCAACGCTTGCTTGTCATTCTCAACGAGACTGAAACCGCCTCGTGCCGCCACAAAAACCC
                      ____________________________________________________________
consensus             GCAACGCTTGCTTGTCATTCTCAACGAGACTGAAACCGCCTCGTGCCGCCACAAAAACCC
 
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JMFF003L15+           CCAGCAACACCGCCACAAACAAAACGCTTAGCCTCTTCATTTCAAGATTGTTTCTTTCTT
JMFF007K21+           CCAGCAACACCGCCACAAACAAAACGCTTAGCCTCTTCATTTCAAGATTGTTTCTTTCTT
JMFF027F19+           CCAGCAACACCGCCACAAACAAAACGCTTAGCCTCTTCATTTCAAGATTGTTTCTTTCTT
JMFF004I18+           CCAGCAACACCGCCACAAACAAAACGCTTAGCCTCTTCATTTCAAGATTGTTTCTTTCTT
JMFF001M13+           CCAGCAACACCGCCACAAACAAAACGCTTAGCCTCTTCATTTCAAGATTGTTTCTTTCTT
                      ____________________________________________________________
consensus             CCAGCAACACCGCCACAAACAAAACGCTTAGCCTCTTCATTTCAAGATTGTTTCTTTCTT
 
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JMFF003L15+           TCTTTAAGCTCCTCCACAAGACATGCCTTTTAGCTTCGGGAGCTACGGTGAAAGAAGCAA
JMFF007K21+           TCTTTAAGCTCCTCCACAAGACATGCCTTTTAGCTTCGGGAGCTACGGTGAAAGAAGCAA
JMFF027F19+           TCTTTAAGCTCCTCCACAAGACATGCCTTTTAGCTTCGGGAGCTACGGTGAAAGAAGCAA
JMFF004I18+           TCTTTAAGCTCCTCCACAAGACATGCCTTTTAGCTTCGGGAGCTACGGTGAAAGAAGCAA
JMFF001M13+           TCTTTAAGCTCCTCCACAAGACATGCCTTTTAGCTTCGGGAGCTACGGTGAAAGAAGCAA
                      ____________________________________________________________
consensus             TCTTTAAGCTCCTCCACAAGACATGCCTTTTAGCTTCGGGAGCTACGGTGAAAGAAGCAA
 
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JMFF003L15+           ATTCCAAGAATGGTGTGTTGTGGGAAAGAAGAGAGTGTGGTTCTT               
JMFF007K21+           ATTCCAAGAATGGTGTGTTGTGGGAAAGAAGAGAGTGTGGTTCTT               
JMFF027F19+           ATTCCAAGAATGGTGTGTTGTGGGAAAGAAGAGAGTGTGGTTCTT               
JMFF004I18+           ATTCCAAGAATGGTGTGTTGTGGGAAAGAAGAGAGTGTGGTTCTTAAAAATGGGGTTTAA
JMFF001M13+           ATTCCAAGAATGGTGTGTTGTGGGAAAGAAGAGAGTGTGGTTCTTAAAAATGGGGTTTAA
                      ____________________________________________________________
consensus             ATTCCAAGAATGGTGTGTTGTGGGAAAGAAGAGAGTGTGGTTCTTAAAAATGGGGTTTAA
 
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JMFF004I18+           AGTTTTAAGAAATATAAATGGAGGTCAGCAGAAGAAGGTTTGAAAGAAGAAGAGAGGTGA
JMFF001M13+           AGTTTTAAGAAATATAAATGGAGGTCAGCAGAAGAAGGTTTGAAAGAAGAAGAGAGGTGA
                      ____________________________________________________________
consensus             AGTTTTAAGAAATATAAATGGAGGTCAGCAGAAGAAGGTTTGAAAGAAGAAGAGAGGTGA
 
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JMFF004I18+           GAGGCGAGGGGATTTGGGTCAAAAGCGAATTTTTAGTTTTAATTTAAAGGAGGCGACTTT
JMFF001M13+           GAGGCGAGGGGATTTGGGTCAAAAGCGAATTTTTAGTTTTAATTTAAAGGAGGCGACTTT
                      ____________________________________________________________
consensus             GAGGCGAGGGGATTTGGGTCAAAAGCGAATTTTTAGTTTTAATTTAAAGGAGGCGACTTT