Contig 004435:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001L24Sequence530004435 (2)ref|XP_009773539.1|2e-12PREDICTED: protein YLS7 [Nicotiana sylvestris] ref|XP_009773540.1| PREDICTED: pr720014796ref|XP_009773539.1|3e-86PREDICTED: protein YLS7 [Nicotiana sylvestris] ref|XP_009773540.1| PREDICTED: pr
JMSF049J15Sequence590004435 (2)ref|XP_006348059.1|2e-13PREDICTED: uncharacterized protein LOC102605748 isoform X1 [Solanum tuberosum] 728005833 (2)ref|XP_006349165.1|2e-25PREDICTED: DNA methyltransferase 1-associated protein 1-like [Solanum tuberosum

Alignment

This contig is upended


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JMSF049J15+                                           TCCATCAAGTTGACCATCATCGACAGGN
                      ____________________________________________________________
consensus                                             TCCATCAAGTTGACCATCATCGACAGGN
 
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JMSF049J15+           TCTTTCTCCACCGACTTTGAAGAAAACTCTCTCAATTTACTATCCTTGGCTTGAGAATCA
                      ____________________________________________________________
consensus             TCTTTCTCCACCGACTTTGAAGAAAACTCTCTCAATTTACTATCCTTGGCTTGAGAATCA
 
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JMSF049J15+           ATTCCTGTACCATTTCTGGGAGGGTCAACACACACTCCAGCATCCTCGAGGACTAAANTA
                      ____________________________________________________________
consensus             ATTCCTGTACCATTTCTGGGAGGGTCAACACACACTCCAGCATCCTCGAGGACTAAANTA
 
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JMSF049J15+           TTCTTTCTTGAGTTATCAACACCATAGTAATGCCCACGAACAGCNGAAGCAATAGGCCCC
JMFF001L24+                   TGAGTTATCAACACCATAGTAATGCCCACGAACAGCAGAAGCAATAGGCCCC
                      ____________________________________________________________
consensus             TTCTTTCTTGAGTTATCAACACCATAGTAATGCCCACGAACAGCAGAAGCAATAGGCCCC
 
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JMSF049J15+           GAGGTAAGAAACGATGAAGCAAGAATTAAGAACACAGCAAGGCCCCCAACTGAAATCACA
JMFF001L24+           GAGGTAAGAAACGATGAAGCAAGAATTAAGAACACAGCAAGGCCCCCAACTGAAATCACA
                      ____________________________________________________________
consensus             GAGGTAAGAAACGATGAAGCAAGAATTAAGAACACAGCAAGGCCCCCAACTGAAATCACA
 
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JMSF049J15+           ATGGACACTAATGTCCTCGGATAGGATCCTGTTGCACTGTCTTTAGCAGAAGCTGTAGTC
JMFF001L24+           ATGGACACTAATGTCCTCGGATAGGATCCTGTTGCACTGTCTTTAGCAGAAGCTGTAGTC
                      ____________________________________________________________
consensus             ATGGACACTAATGTCCTCGGATAGGATCCTGTTGCACTGTCTTTAGCAGAAGCTGTAGTC
 
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JMSF049J15+           ATCCTTTTAAGATTTGAGAACAGAACCGCCCATATAACAGATCCACTTGGAATCTTGAAA
JMFF001L24+           ATCCTTTTAAGATTTGAGAACAGAACCGCCCATATAACAGATCCACTTGGAATCTTGAAA
                      ____________________________________________________________
consensus             ATCCTTTTAAGATTTGAGAACAGAACCGCCCATATAACAGATCCACTTGGAATCTTGAAA
 
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JMSF049J15+           TTCAGCCAAAATTTATAGTTTTGAGGCTCTGGGCAGTCCTCCAGTGTGTTGTTGAGCTTG
JMFF001L24+           TTCAGCCAAAATTTATAGTTTTGAGGCTCTGGGCAGTCCTCCAGTGTGTTGTTGAGCTTG
                      ____________________________________________________________
consensus             TTCAGCCAAAATTTATAGTTTTGAGGCTCTGGGCAGTCCTCCAGTGTGTTGTTGAGCTTG
 
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JMSF049J15+           GGAGAAGATGGAGTAAAATGCAGAGAGATAATGGTGGAAAGGGAAATCAAGAATGCATAG
JMFF001L24+           GGAGAAGATGGAGTAAAATGCAGAGAGATAATGGTGGAAAGGGAAATCAAGAATGCATAG
                      ____________________________________________________________
consensus             GGAGAAGATGGAGTAAAATGCAGAGAGATAATGGTGGAAAGGGAAATCAAGAATGCATAG
 
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JMSF049J15+           AATCAGAAGAATCGGATACACGGCACGAGAATGTAGTAATTACTAGCTCAGTAGTCTGTA
JMFF001L24+           AATCAGAAGAA-CGGATACACGGCACGAGAATGTAGTAATTACTA-CTCAGTAGTCTGTA
                      ____________________________________________________________
consensus             AATCAGAAGAATCGGATACACGGCACGAGAATGTAGTAATTACTAGCTCAGTAGTCTGTA
 
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JMSF049J15+           CTTGCCGGGAATGGAATTTTT                                       
JMFF001L24+           CTTGCCGGGAATGGAATTTTTACAGATTTGCTCTTTAAACAATCAATTAAAATCCTTGTT
                      ____________________________________________________________
consensus             CTTGCCGGGAATGGAATTTTTACAGATTTGCTCTTTAAACAATCAATTAAAATCCTTGTT
 
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JMFF001L24+           AGGGATTAGAGAAGGGGAAGACCAGAGCCTAGAGGCAGTCAATGAATGAATGTTCAGACT
                      ____________________________________________________________
consensus             AGGGATTAGAGAAGGGGAAGACCAGAGCCTAGAGGCAGTCAATGAATGAATGTTCAGACT