Contig 004432:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMCP004H12+                                                                      G
rJMCP004B09+                                                                     G
rJMCP005A11+                                                                     G
rJMCP004A02+                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
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JMCP004H12+           TCCTCTCTCTCTCTCCCTTTCTAAACTTCTCTCTAGAACATTAACAATTCTGTTGTTGAA
rJMCP009A09+           CCTCTCTCTCTCTCCCTTTCTAAACTTCTCTCTAGAACATTAACAtaagTGTTGTTGAA
rJMCP004B09+          TCCTCTCTCTCTCTCCCTTTCTAAACTTCTCTCTAGAACATTAACAATTCTGTTGTTGAA
rJMCP004F07+          TCCTCTCTCTCTCTCCCTTTCTAAACTTCTCTCTAGAACATTAACAATTCTGTTGTTGAA
JMFS049B06-              TCTCTCTCTCTCCCTTTCTAAACTTCTCTCTAGAACATTAACAATTCTGTTGTTGAA
rJMCP019A02+          TCCTCTCTCTCTCTCCCaaTCTttAgaagagagatcAACATTAACAATagTGTTGTTGAA
rJMCP005A11+          TCCTCTCTCTCTCTCCCTTTCTAAACTTCTCTCTAGAACATTAACAATTCTGTTGTTGAA
rJMCP005F05+                                                           CTGTTGTTGAG
rJMCP004A02+          TCCTCTCTCTCTCTCCCTTTCTAAACTTCTCTCTAGAACATTAACAATTCTGTTGTTGAA
                      ____________________________________________________________
consensus             TCCTCTCTCTCTCTCCCTTTCTAAACTTCTCTCTAGAACATTAACAATTCTGTTGTTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP004H12+           CAATTGATTGAGTGATGATTCGCATAAAGAAAGATGAGAGAGAGAGAGAGATGGGAAAAG
rJMCP009A09+          gttTaGATTGAGTGATGATTCGCATAAAGAAAGATGAGAGAGAGATAGAGATGGGAAAAG
rJMCP004B09+          CAATTGATTGAGTGATGATTCGCATAAAGAAAGATGAGAGAGAGAGAGAGATGGGAAAAG
rJMCP004F07+          CAATTGATTGAGTGATGATTCGCATAAAGAAAGATGAGAGAGAGAGAGAGATGGGAAAAG
JMFS049B06-           CAATTGATTGAGTGATGATTCGCATAAAGAAAGATGAGAGAGAGAGAGAGATGGGAAAAG
rJMCP019A02+          CAATTGtaactGTGATGATTCGCATAAGGAAAGAT--GAGAGAGAGAGAGATGGGAAAAG
rJMCP005A11+          CAATTGATTGAGTGATGATTCGCATAAAGAAAGAT--GAGAGAGAGAGAGATGGGAAAAG
rJMCP005F05+          CAATTGAaaGAGTGATGATTCGCATAAAGAAAGATGAGAGAGAGAGAGAGATGGGAAAAG
rJMCP004A02+          CAATTGATTGAGTGATGATTCGCATAAAGAAAGATGAGAGAGAGAGAGAGATGGGAAAAG
                      ____________________________________________________________
consensus             CAATTGATTGAGTGATGATTCGCATAAAGAAAGATGAGAGAGAGAGAGAGATGGGAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP004H12+           AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
rJMCP009A09+          AGGGTGTTTGGGTTTAGgAtaagTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
rJMCP004B09+          AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
rJMCP004F07+          AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
JMFS049B06-           AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
rJMCP019A02+          AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
rJMCP005A11+          AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
rJMCP005F05+          AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
rJMCP004A02+          AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
JMCP003C07+                                                              AGATTTTCT
rJMCP009A01+                                                                 TTTCT
rJMCP004F09+                                                              GATTTTCT
                      ____________________________________________________________
consensus             AGGGTGTTTGGGTTTAGCAATTCTTATTGGTAACTAGCTAGCTATCATTCCAGATTTTCT
 
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JMCP004H12+           TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
rJMCP009A09+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
rJMCP004B09+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
rJMCP004F07+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
JMFS049B06-           TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
rJMCP019A02+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
rJMCP005A11+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
rJMCP005F05+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
rJMCP004A02+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
JMCP003C07+           TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCGCAAAGATGG
JMCP017F11+                                                 GGATGAAGTAGCACAAAGATGG
rJMCP009A01+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
rJMCP004F09+          TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
                      ____________________________________________________________
consensus             TGTTTCTTGTTTCTTGTTTCTTTGATGGGTTCAGAGGTGGATGAAGTAGCACAAAGATGG
 
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JMCP004H12+           AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGagcag
rJMCP009A09+          AGTTTTTTGTACTCcAAGGAGACAAAAtTGGCTTCCATAATTCCACACTATAGTcagcag
rJMCP004B09+          AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
rJMCP004F07+          AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
JMFS049B06-           AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
rJMCP019A02+          AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
rJMCP005A11+          AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
rJMCP005F05+          AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
rJMCP020D07+                                                        ACTATAGTGTCGTC
rJMCP004A02+          AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGagcag
JMCP003C07+           AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
JMCP017F11+           AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
rJMCP009A01+          AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGagcag
rJMCP004F09+          AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
                      ____________________________________________________________
consensus             AGTTTTTTGTACTCGAAGGAGACAAAAATGGCTTCCATAATTCCACACTATAGTGTCGTC
 
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JMCP004H12+           TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACAgCTAAA
rJMCP009A09+          aaCTTTTTTgaCTGTAAAAAGATGGAGagTTTTAGTTTGCTGTACTTCTAAACAgCaAAA
rJMCP004B09+          TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
rJMCP004F07+          TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
JMFS049B06-           TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
rJMCP019A02+          TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
rJMCP005A11+          TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
rJMCP005F05+          TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
rJMCP020D07+          aTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
rJMCP004A02+          TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACAgCTAAA
JMCP003C07+           TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
JMCP017F11+           TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
rJMCP009A01+          TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
rJMCP004F09+          TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAG
                      ____________________________________________________________
consensus             TTCTTTTTTCTCTGTAAAAAGATGGAGTCTTTTAGTTTGCTGTACTTCTAAACACCTAAA
 
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JMCP004H12+           GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGAagTGATC
rJMCP009A09+          GAATCgttGgttAAAGCATATTATATTATtTGTATATATAAGGGGTGAggaGAagTcATC
rJMCP004B09+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
rJMCP004F07+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
JMFS049B06-           GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
rJMCP019A02+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
rJMCP005A11+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
rJMCP005F05+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
rJMCP020D07+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
rJMCP004A02+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGAagTGATC
JMCP003C07+           GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
JMCP017F11+           GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
rJMCP009A01+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGAagTGATC
rJMCP019D01+                      AAAGCATATTAataaATATGTATATATAAGGGcactggacATCTGATC
rJMCP004F09+          GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
                      ____________________________________________________________
consensus             GAATCCAAGCAAAAAGCATATTATATTATATGTATATATAAGGGGTGACCTGATCTGATC
 
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JMCP004H12+           TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCAgTTGGTACTACATACTTCACTGtTg
rJMCP009A09+          TAAATTTGTAAAACTGTGTTgtAGttcTGGAACgtgTTGGTACTACATACTTCACTGtTg
rJMCP004B09+          TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
rJMCP004F07+          TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
JMFS049B06-           TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
rJMCP019A02+          TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
rJMCP005A11+          TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
rJMCP005F05+          TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
rJMCP020D07+          TAAATTTGTAAAACTGTGCTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
rJMCP004A02+          TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCAgTTGGTACTACATACTTCACTGtTg
JMCP003C07+           TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTCCACTGATC
JMCP017F11+           TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
rJMCP009A01+          TAAATTTGTAAAACTGTGTTCAAGAAcTGGAACCACTTGGTACTACATACTTCACTGtTg
rJMCP019D01+          aAttaaaGTAAtACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
rJMCP004F09+          TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
                      ____________________________________________________________
consensus             TAAATTTGTAAAACTGTGTTCAAGAAGTGGAACCACTTGGTACTACATACTTCACTGATC
 
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JMCP004H12+           ttTTATAGCgtaGAAGAGATCACTTGGTAGCagactTTCCTTGGGTGCTTTGATGTCCAT
rJMCP009A09+          ttaaATAGCgtaGAAGAGATgtgTTGGTAcgagacATTCCTTGGGTGCTTTGATGTCgta
rJMCP004B09+          AATTATAGCCATGAAGAGATCACTTGGTAGCagaGATTCCTTGGGTGCTTTGATGTCCAT
rJMCP004F07+          AATTATAGCCATGAAGAGATCACTTGGTAGCagaGATTCCTTGGGTGCTTTGATGTCCAT
JMFS049B06-           AATTATAGCCATGAAGAGATCACTTGGTAGCTCTGATTCCTTGGGTGCTTTGATGTCCAT
rJMCP019A02+          AATTATAGCCATGAAGAGATCACTTGGTAGCTCaGATTCCTTGGGTGCTTTGATGTCCAT
rJMCP005A11+          AATTATAGCCATGAAGAGATCACTTGGTAGCTCTGATTCCTTGGGTGCTTTGATGTCCAT
rJMCP005F05+          AATTATAGCCATcttctctagtCTTGGTAGCaCTGATTCCTTGGGTGCTTTGATGTCCAT
rJMCP020D07+          AATTATAGCCATGAAGAGATCACTTGGTAGCTCTGATTCCTTGGGTGCTTTGATGTCCAT
rJMCP004A02+          ttTTATAGCgtaGAAGAGATCACTTGGTAGCagactTTCCTTGGGTGCTTTGATGTCCAT
JMCP003C07+           AATTATAGCCATGAAGAGATCACTTGGTAGCTCTGATTCCTTGGGTGCTTTGATGTCCAT
JMCP017F11+           AATTATAGCCATGAAGAGATCACTTGGTAGCTCTGATTCCTTGGGTGCTTTGATGTCCAT
rJMCP009A01+          ttaaATAGCCATGAAGAGATCACTTGGTAcgagactTTCCTTGGGTGCTTTGATGTCCAT
rJMCP019D01+          AATTATAGCCATGAAGAGATCACTTGGTAGCTCTGATTCCTTGGGTGCTTTGAAGTCCAT
rJMCP004F09+          AATTATAGCCATGAAGAGATCACTTGGTAGCagaGATTCCTTGGGTGCTTTGATGTCCAT
                      ____________________________________________________________
consensus             AATTATAGCCATGAAGAGATCACTTGGTAGCTCTGATTCCTTGGGTGCTTTGATGTCCAT
 
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JMCP004H12+           CTGTCCAACCACCGCAGATGAGCCCGGCC                               
rJMCP009A09+          CTGTCgttCgtgCGgtcATGAGCCCGGCC                               
rJMCP004B09+          CacaggttCCACCGCAGATGA                                       
rJMCP004F07+          CTGTCCAACCACCGCAGATGA                                       
JMFS049B06-           CTGTCCAACCACCGCAG                                           
rJMCP019A02+          CTGTCCAACCACCGCAGATGA                                       
rJMCP005A11+          CTGTCCAACCACCGCAGATGA                                       
rJMCP005F05+          CTGTCCAACCACCGCAG                                           
rJMCP020D07+          CTGTCCAACCACCGCAGATGA                                       
rJMCP004A02+          CTGTCCAACCACCGCAGATGAGCCCGGCC                               
JMCP003C07+           CTGTCCAACCACCGCAGGTGCTTAATTAATTCTCCAAAATTATATTCCCTATGTTTAATG
JMCP017F11+           CTGTCCAACCACCGCAGGTGCTTAATTAATTCTCCAAAATTATATTCCCTATGTTTAATG
rJMCP009A01+          CTGTCCAACCACCGCAGGTGCTTAATTAATTCTCCAtttTTATATTCCCTATGTTTAATG
rJMCP019D01+          CTGTCCAACCACCGCAGGTGCTTAATTAATTCTCCAAAATTATATTCCCTATGTTTAATG
rJMCP004F09+          CTGTCCAACCACCGCAGGTGCTTAATTAATTCTCCAAAATTATATTCCCTATGTTTAATG
                      ____________________________________________________________
consensus             CTGTCCAACCACCGCAGATGATTAATTAATTCTCCAAAATTATATTCCCTATGTTTAATG
 
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JMCP003C07+           ATGTTCTTTCTACTCTGTTCAGTGATTTTAATGTTTCTCATTATTATTAGAAATTTGAGA
JMCP017F11+           ATGTTCTTTCTACTCTGTTCAGTGATTTTAATGTTTCTCATTATTATTAGAAATTTGAGA
rJMCP009A01+          ATGTTCTTagTACTCTGTTCAGTGATTTTAATGTTTCTCATTATTATTAGAAAaTTGAGA
rJMCP019D01+          ATGTTCTTTCTACTCTGTTCAGTGATTTTAATGTTTCTCATTATTATTAGAAATTTGAGA
rJMCP004F09+          ATGTTCTTTCTACTCTGTTCAGTGATTTTAATGTTTCTCATTATTATTAGAAATTTGAGA
                      ____________________________________________________________
consensus             ATGTTCTTTCTACTCTGTTCAGTGATTTTAATGTTTCTCATTATTATTAGAAATTTGAGA
 
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JMCP003C07+           TGTTTTTGGTAATTGAAGCATGTGTTCCATCTCAACTAAAAGCTTAAGCTGATAGTTGGA
JMCP017F11+           TGTTTTTGGTAATCGAAGCATGTGTTCCATCTCAACTAAAAGCTTAAGCTGATAGTTGGA
rJMCP009A01+          TGTTTTTGGTAtTTGAAGgtaGTGTTCCAaCTgttCTAAAAGCTTAAGCTGATAGTTGGA
rJMCP019D01+          TGTTTTTGGTAATTGAAGCATGTGTTCCATCTCAACTAAAAGCTTAAGCTGATAGTTGGA
rJMCP004F09+          TGTTTTTGGTAATTGAAGCATGTGTTCCATCTCAACTAAAAGCTTAAGCTGATAGTTGGA
                      ____________________________________________________________
consensus             TGTTTTTGGTAATTGAAGCATGTGTTCCATCTCAACTAAAAGCTTAAGCTGATAGTTGGA
 
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JMCP003C07+           TTGCATGACTATATGCTCACATTGGTGGTTGGATTTGGTTGCGGATTTGGTTGCAGATGA
JMCP017F11+           TTGCATGACTATATGCTCACATTGGTGGTTGGATTTGGTTGCGGATTTGGTTGCAGATGA
rJMCP009A01+          TTGgtaGACTATATGCTCAgtaTGGTGGTTGGATTTGGTTGCGGATTTGGTTGCAGATGA
rJMCP019D01+          TTGCATGACTATATGCTCACATTGGTGGTTGGATTTGGTTGCGGATTTGGTTGCAGATGA
rJMCP004F09+          TTGCATGACTATATGCTCACATTGGTGGTTGGATTTGGTTGCGGATTTGGTTGCAGATGA
                      ____________________________________________________________
consensus             TTGCATGACTATATGCTCACATTGGTGGTTGGATTTGGTTGCGGATTTGGTTGCAGATGA