Contig 004431:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002B04Sequence490004431 (15)
JMCP008B02Sequence490004431 (15)
JMCP013A07Sequence170004431 (15)
JMCP013B04Sequence389004431 (15)
JMCP013C03Sequence374004431 (15)
JMCP013E05Sequence239004431 (15)
JMCP014A10Sequence395004431 (15)
JMCP014H07Sequence382004431 (15)
JMCP017D10Sequence357004431 (15)
JMCP017E09Sequence492004431 (15)ref|XP_006406888.1|5e-06hypothetical protein EUTSA_v10022282mg, partial [Eutrema salsugineum] gb|ESQ4834
JMCP017E10Sequence419004431 (15)
JMFF044N20Sequence478004431 (15)519004431 (15)
JMFN043M18Sequence476004431 (15)
JMFN045H11Sequence463004431 (15)

Alignment

This contig is upended


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rJMFF044N20-                                                    GGAGAGTTTTTTTTTTTT
                      ____________________________________________________________
consensus                                                       GGAGAGTTTTTTTTTTTT
 
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rJMFF044N20-          TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCGAGGAAAATCC
JMFF044N20+                                                          ACGAGGAAAATCA
JMFN043M18+                                                          ACGAGGAAAATCA
rJMCP017E10+                                                         ACGAGGAAAATCA
JMCP008B02+                                                          ACGAGGAAAATCA
rJMCP017E09+                                                         ACGAGGAAAATCA
rJMCP002B04+                                                           GAGGAAAATCA
                      ____________________________________________________________
consensus             TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGAGGAAAATCA
 
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rJMFF044N20-          CAATTTATTGACTTTAAGCACCCCCAACCCAATTTTCATAATCAAAGGCACCTTTGCAAA
JMFF044N20+           CGAATTATTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
JMCP013C03+                                  CCAACACAACTTagtTAATCAAAGGgtcgATTGCAGA
JMCP013B04+                      CATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
JMCP014A10+                                       ACAACTTTCATAATCAAAGGCAGCATTGCAGA
JMCP014H07+                           AGCAtgtggAACtgtACTTTCATAATCAAAGcgtGgATacCAGA
JMCP013A07+                     ACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
JMFN043M18+           CGAATTATTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
JMFN045H11+                  TTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
rJMCP017E10+          CGAATTATTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
JMCP008B02+           CGAATTATTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
rJMCP017D10+                    ACATTAAGCAACACCAACACAACTTagtTAATCAAAGGCAGCATTGCAGA
JMCP013E05+                  TTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
rJMCP017E09+          CGAATTATTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
rJMCP002B04+          CGAATTATTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
                      ____________________________________________________________
consensus             CGAATTATTGACATTAAGCAACACCAACACAACTTTCATAATCAAAGGCAGCATTGCAGA
 
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rJMFF044N20-          AATGTTCTTTCATTTTCACAAAGGATAGGTCTTAAAAAAGCCAAACTTGCAATCT-ATAA
JMFF044N20+           AATGTTCTTTCAGTTTCACGAAGGATAGGTCTTAGAGAAGTCAAACATGCAATCT-ATAA
JMCP013C03+           AATGaagTTTCAGTTTCACGAAGGtatccagaTAGAGAAGTCtttCATGCttaga-ATAA
JMCP013B04+           AATcTTCaaTCAGTTTCACGAAGGtatccagaatGAGAAGTCAAACATGCAAaga-tatt
JMCP014A10+           AATcaagaaaCAGTTagtCGAAGGATAGGTCTatctcttcagtAACtacgttagactatt
JMCP014H07+           AATGTagaaagAGTTagtactAGGtatccataatGAGAAGaCAAACATGCAAaga-ATAA
JMCP013A07+           AATGTagaaaCAGTTTCACGAAGGATAGGagaTAGAGAAGTCAAACATGCAATCa-ATAA
JMFN043M18+           AATGTTCTTTCAGTTTCACGAAGGATAGGTCTTAGAGAAGTCAAACATGCAATCT-ATAA
JMFN045H11+           AATGTTCTTTCAGTTTCACGAAGGATAGGTCTTAGAGAAGTCAAACATGCAATCT-ATAA
rJMCP017E10+          AATGTTCTTTCAGTTTCACGAAGGATAGGTCTTAGAGAAGTCAAACtaGCAATCT-ATAA
JMCP008B02+           AATGTTCTTTCAGTTTCACGAAGGATAGGTCTTAGAGAAGTCAAACATGCAATCT-ATAA
rJMCP017D10+          AATGTTCaTaCAGTTTCACGAAGGATAGGaCTTAGAGAAGTCtttgATGCAAaga-ATAA
JMCP013E05+           AATGTTCTTTCAGTTTCACGAAGGATAGGaCTTAGAGAAGagAAACATGCAATCa-ATAA
rJMCP017E09+          AATGTTCTTTCAGTTTCACGAAGGATAGGTCTTAGAGAAGTCAAACATGCAATCT-ATAA
rJMCP002B04+          AATGTTCTTTCAGTTTCACGAAGGATAGGTCTTAGAGAAGTCAAACATGCAATCT-ATAA
                      ____________________________________________________________
consensus             AATGTTCTTTCAGTTTCACGAAGGATAGGTCTTAGAGAAGTCAAACATGCAATCT-ATAA
 
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rJMFF044N20-          CAACCCTTCTAACCCACCCATATGCAAAAGCTTTGCTCTTGCCACAAAAAGTCTTTCAAT
JMFF044N20+           CAACACATCTAAACCAACCATATGCAAGAGCATTGCTCTTGCCACAATAAGTCTTTCAAT
JMCP013C03+           gttCACATgatttggttggtatacCAAGAGCAaacgaCTTGCCACAATAAGTCTTTCAAT
JMCP013B04+           gAACACAagaAttCCttgCtTtTGCAAGAGCAaacgagaTGCCACAATAAGTCTTTCAAT
JMCP014A10+           gttgAgAagatttggttggtatacgAAGAGCATacgagaacagtgAATAAGTCTTTCAAT
JMCP014H07+           gttCACAagatttgCttggtatacgAAGAGgtTacgTCTTGCCACAATAAGagaTTCAAT
JMCP013A07+           CAACACATCTtttggtagaaatacCAAGAGCATacgaCTTGCCtgAATAAGTCTTTCAAT
JMFN043M18+           CAACACATCTAAACCAACCATATGCAAGAGCATTGCTCTTGCCACAATAAGTCTTTCAAT
JMFN045H11+           CAACACATCTAAACCAACCATATGCAAGAGCATTGCTCTTGCCACAATAAGTCTTTCAAT
rJMCP017E10+          CAACACATCTAAACCAACCATATGCAAGAGCATTGCTCTTGCCACAATAAGTCTTTCAAT
JMCP008B02+           CAACACATCTAAACCAACCATATGCAAGAGCATTGCTCTTGCCACAATAAGTCTTTCAAT
rJMCP017D10+          CAACACATCTAAACCtACCATATcCAAGAGCATTGCTCTTGCCACAATAAGTgaTTCAAT
JMCP013E05+           CAACACATCatttgCAACCATAacCAAGAGCATTcgaCTTGCCACAATAAGTCTTTCAAT
rJMCP017E09+          CAACACATCTAAACCAACCATATGCAAGAGCATTGCTCTTGCCACAATAAGTCTTTCAAT
rJMCP002B04+          CAACACATCTAAACCAACCATATGCAAGAGCATTGCTCTTGCCACAATAAGTCTTTCAAT
                      ____________________________________________________________
consensus             CAACACATCTAAACCAACCATATGCAAGAGCATTGCTCTTGCCACAATAAGTCTTTCAAT
 
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rJMFF044N20-          GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGCCCGGCCCCTCCA
JMFF044N20+           GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGTCCTGCACCTCCT
JMCP013C03+           GATTTgcTTGAACAagcAGTaatatttaagaaGCCACTTTagaTCAGaggTGCACgagga
JMCP013B04+           GATTTCGTTGAACAagcAGTTatatttaagaaGCCACTTTagaaCAGTgCTcCACCTgga
JMCP014A10+           GATTTCGTTGAACtagctGTTTATCACTagaTGCCACTTTagaagAGTggaGCACCTgga
JMCP014H07+           GATTagcTactACAagcAGTTatagtgaagaTGggtgaaaataagAGTggaGCAggagga
JMCP013A07+           G                                                           
JMFN043M18+           GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGTCCTGCACCTCCT
JMFN045H11+           GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGTCCTGCACCTCCT
rJMCP017E10+          GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGTCCTGCACCTCCT
JMCP008B02+           GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGTCCTGCACCTCCT
rJMCP017D10+          GATTTCcaaGAAgtatctcaaatTCtgaTCTTGCCACaaaagaagAcaggacCACCTgga
JMCP013E05+           GATTagcTTGAACATCGAGTTTATCACTTCTTGCCACTTTagaaCAGTgCacCACCTgga
rJMCP017E09+          GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGTCCTGCACCTCCT
rJMCP002B04+          GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGTCCTGCACCTCCT
                      ____________________________________________________________
consensus             GATTTCGTTGAACATCGAGTTTATCACTTCTTGCCACTTTTCTTCAGTCCTGCACCTCCT
 
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rJMFF044N20-          AAGGCCCCCTTTTGACCTTTAGCCTTGAAACCCTTAAGGGCCTTTTCTTCTCCCTTCTTT
JMFF044N20+           AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTTCTTCTTCCTTCTTT
JMCP013C03+           AATGCTgggTTTTGAGCTTTAGTCaactGATCCTTAAGTGCCTaaaCaagaagCTTCTTa
JMCP013B04+           AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTaCTTCTTCCTTCTTT
JMCP014A10+           AATGCTCCCTTTTGAGCTTTAGTCaTcAcATggTTAAGTGCCTTTTCTTCTTggTTCTTT
JMCP014H07+           AATGCTCCCTTTTGAGCTTTAGagTTGAGATCCTTAAGTGCCTTTagaagaaggaagTTT
JMFN043M18+           AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTTCTTCTTCCTTCTTT
JMFN045H11+           AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTTCTTCTTCCTTCTTT
rJMCP017E10+          AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTTCTTCTTCCTagaTa
JMCP008B02+           AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTTCTTCTTCCTTCTTT
rJMCP017D10+          ttTcgaCCCTaaactcgaaatcagaaGAGATggaTAAGTGCCTTTagaagaTggaagaTT
JMCP013E05+           AATGCTC                                                     
rJMCP017E09+          AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTTCTTCTTCCTTCTTT
rJMCP002B04+          AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTTCTTCTTCCTTCTTT
                      ____________________________________________________________
consensus             AATGCTCCCTTTTGAGCTTTAGTCTTGAGATCCTTAAGTGCCTTTTCTTCTTCCTTCTTT
 
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rJMFF044N20-          TCCGGAAGGAAAGCCTTGTCACCCTCGCCGAACTCTTTCTTATCACCCTTTGGCTGCTCC
JMFF044N20+           TTCTGAAGGAAAGCCTTGTCAGCCTCGTCGTACTCTTTCTTATCAGCCTTTGGCTGCTTC
JMCP013C03+           aagacAAGGAAAGCCTTGTCAGCCTCGTCGTtgaCTTagaaATCAGCgaaaGcCacgaTC
JMCP013B04+           TagaGAAGGAAAGCCTTGTCAGCCTCGTCGTACTCTTTCTTATCAGCCTTTccCTGCTTC
JMCP014A10+           TTCTGAAGGAAAGCCTTGTCtcggagcaCGTACTCTTTCTTATCAGCgaaTcGCTGCTTC
JMCP014H07+           TagTGAAGGAAtGgCTacagtcgCagcaCGatgTgaaagaTATCtcgCaaaccgacgaag
JMFN043M18+           TTCTGAAGGAAAGCCTTGTCAGCCTCGTCGTACTCTTTCTTATCAGCCTTTGGCTGCTTC
JMFN045H11+           TTCTGAAGGAAAGCCTTGTCAGCCTCGTCGTACTCTTTCTTATCAGCCTTTGGCTGCTTC
rJMCP017E10+          TTCTcAtcctt                                                 
JMCP008B02+           TTCTGAAGGAAAGCCTTGTCAGCCTCGTCGTACTCTTTCTTATCAGCCTTTGGCTGCTTC
rJMCP017D10+          TagaGAAGGAAAGCggacTgtcggagcagcTtCTCTTagaatTCtGCCTTaccgacgTTC
rJMCP017E09+          TTCTGAAGGAAAGCCCTGTCAGCCTCGTCGTACTCTTTCTTATCAGCCTTTGGCTGCTTC
rJMCP002B04+          TTCTGAAGGAAAGCCTTGTCAGCCTCGTCGTACTCTTTCTTATCAGCCTTTGGCTGCTTC
                      ____________________________________________________________
consensus             TTCTGAAGGAAAGCCTTGTCAGCCTCGTCGTACTCTTTCTTATCAGCCTTTGGCTGCTTC
 
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rJMFF044N20-          AAAGGCTTTGCCTTTCCACCTTGCTTGAAAAACATGGTTGCAACCTAGGGT         
JMFF044N20+           AAAGGCTTTGCCTTTCCACCTTGCTTGGAAGACATGGTTGCAAGCTAGGGTTAAGAGATC
JMCP013C03+           AAAGGCTaacggaaaggAggaacgaaGGAAGACATGGT                      
JMCP013B04+           AAAGGgaaacCCTTaggtggaacgaTGGAAGACATGGTTGC                   
JMCP014A10+           AAAGGCTTTGCCTTTCCACCaTcgaTGGAAGACATGGTTGCAAcCTAGGGTTAAGAGATC
JMCP014H07+           tAAGGCTaacCCaaaggtCCTTGCTTcGAAGACATGGTT                     
JMFN043M18+           AAAGGCTTTGCCTTTCCACCTTGCTTGGAAGACATGGTTGCAAGCTAGGGTTAAGAGATC
JMFN045H11+           AAAGGCTTTGCCTTTCCACCTTGCTTGGAAGACATGGTTGCAAGCTAGGGTTAAGAGATC
JMCP008B02+           AAAGGCTTTGCCTTTCCACCTTGCTTGGAAGACATGGTTGCAAGCTAGGGTTAAGAGATC
rJMCP017D10+          AAAGGCTT                                                    
rJMCP017E09+          AAAGGCTTTGCCTTTCCACCTTGCTTGGAAGACATGGTTGCAAGCTAGGGTTAAGAGATC
rJMCP002B04+          AAAGGCTTTGCCTATCCACCTTGCTTGGAAGACATGGTTGCAAGCTAGGGTTAAGAGATC
                      ____________________________________________________________
consensus             AAAGGCTTTGCCTTTCCACCTTGCTTGGAAGACATGGTTGCAAGCTAGGGTTAAGAGATC
 
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JMFF044N20+           GATCTGATTGATTTTGAGAACGATGCCTTTTCTCCTAACCCG                  
JMCP014A10+           GAT                                                         
JMFN043M18+           GATCTGATTGATTTTGAGAACGATGCCTTTTCTCCTAACCCGT                 
JMFN045H11+           GATCTGATTGATTTTGAGAACGATGCCTTTTCTCCTAACCCGTGC               
JMCP008B02+           GATCTGATTGATTTTGAGAACGATGCCTTTTCTCCTAACCCGTGCACTTTCTCCTCG   
rJMCP017E09+          GATCTGATTGATTTTGAGAACGATGCCTTTTCTCCTAACCCGTGCGCTTTCTCCTCG   
rJMCP002B04+          GATCTGATTGATTTTGAGAACGATGCCTTTTCTCCTAACCCGTGCGCTTTCTCCTCGCGG
                      ____________________________________________________________
consensus             GATCTGATTGATTTTGAGAACGATGCCTTTTCTCCTAACCCGTGCGCTTTCTCCTCGCGG