Contig 004426:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-             GAGAGAACTGTCTGAGTTTTTTTTTTTTTTTTTTTATGGAACATTACCTTTATTAGTG
                      ____________________________________________________________
consensus               GAGAGAACTGTCTGAGTTTTTTTTTTTTTTTTTTTATGGAACATTACCTTTATTAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           ACTTTAGGCTTACAACTTCCCCACCATTTAAAACACTTGGAATCCAAGTGGGCAGAATGC
                      ____________________________________________________________
consensus             ACTTTAGGCTTACAACTTCCCCACCATTTAAAACACTTGGAATCCAAGTGGGCAGAATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           AATGGCGGGTTCGCCAGTAAGCAATAGAAGATATAGATACATGTATAGTATAGTATCTAC
                      ____________________________________________________________
consensus             AATGGCGGGTTCGCCAGTAAGCAATAGAAGATATAGATACATGTATAGTATAGTATCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           AATATTGTATTGCTACCTCGAGAGAAAACGGAATAAAAGCAAGCATCATCCGGAGGGGAT
                      ____________________________________________________________
consensus             AATATTGTATTGCTACCTCGAGAGAAAACGGAATAAAAGCAAGCATCATCCGGAGGGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           GGGTTTCAGGTGGAATACACATACATTGTACTTAGTTCTCTGCTTGTTTAAGCATCCGCA
                      ____________________________________________________________
consensus             GGGTTTCAGGTGGAATACACATACATTGTACTTAGTTCTCTGCTTGTTTAAGCATCCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           GAATAGTGAGGAAGAGGTTTAGGATATCCAGATAGAGAGTGACGGATGCCCAGATGTATT
                      ____________________________________________________________
consensus             GAATAGTGAGGAAGAGGTTTAGGATATCCAGATAGAGAGTGACGGATGCCCAGATGTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           CGTCATATGTAAACCGCTTAATCAAGTTATCTGTGTCATATACAATGTATCCCGAGAAAA
                      ____________________________________________________________
consensus             CGTCATATGTAAACCGCTTAATCAAGTTATCTGTGTCATATACAATGTATCCCGAGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           TTATAGCACTGACTGCACTCAAGACAGCCGTGGATGCAGATCCAAGAGGGAAGAACATCT
JMCP007G07+                                                    CCAAGAGGGAAGAACAagT
rJMCP009D12+                                                      AGAGGGAAGAACAagT
JMCP003C09+                                                      AAGAGGGAAGAAgAaga
                      ____________________________________________________________
consensus             TTATAGCACTGACTGCACTCAAGACAGCCGTGGATGCAGATCCAAGAGGGAAGAACATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           GAATGAAGCCAGTCAGGATGAGAATGAAAAGGCTGGTGAACAGGATTGGTCCCAAAAAGT
JMCP007G07+           GAATGAAGCCAGTCAGGATGAGAATGAAAAGGCTGGTGAACAGGATTGGTCCCAAAAAGT
rJMCP009D12+          GAATGAAGCCAGTCAGGATGAGAATGAAAAGGCTGGTGAACAGGATTGGTCCCAAAAAGT
JMCP003C09+           cAATGAAGCCAGTCAGGATGAGAATGAAAAGGCTGcTGAACAGGATTGGTCCCAAAAAGT
                      ____________________________________________________________
consensus             GAATGAAGCCAGTCAGGATGAGAATGAAAAGGCTGGTGAACAGGATTGGTCCCAAAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           TGAAGTCTTTACCCTTCTTAGCAGCCCAGAAAGTGTATCCAGTCAAAGCTAAAACCACAG
JMCP007G07+           TGAAGTCTCTACCCTTCTTAGCAGCCCAGAAAGTGTATCCAGTCAAAGCTAAAACCACAG
rJMCP009D12+          TGAAGTCTTTACCCTaCTTAGCAGCCCAGAAAGTGTATCCAGTCAAAGCTAAAACCACAc
JMCP003C09+           TGAAGTCTTTACCCTTCTTAGCAGCCCAGAAAGTGTATCCAGTCAAAGCTAAAACCACAG
                      ____________________________________________________________
consensus             TGAAGTCTTTACCCTTCTTAGCAGCCCAGAAAGTGTATCCAGTCAAAGCTAAAACCACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS078A10-           CTGATGTCAAGATCAGAG                                          
JMCP007G07+           CTGATGTCAAGATCAGAGCCTCGAGCACAATCGCACCATCTGTGTTAGCACAGCTTACGG
rJMCP009D12+          gTGATGTCAAGATCAGAGCCTCGAGCACAATCGCACCATCTGTGTTAGCACAGgTTACGG
JMCP003C09+           CTGATGTCAAGATCAGAGCCTCGAGCACAATCGCACCATCTGTGTTAGCACAGCTTACGG
                      ____________________________________________________________
consensus             CTGATGTCAAGATCAGAGCCTCGAGCACAATCGCACCATCTGTGTTAGCACAGCTTACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP007G07+           CAACAGGGAAACTCAGAGAGGCAGTGAAAAGTCCAAGGAAAATGAAGTTCAGTGGATGCC
rJMCP009D12+          CAACAGGGAAACTCAGAGAGGCAGTGAAAAGTCCAAGGAAAATGAAGTTCAGTGGATGCC
JMCP003C09+           CAACAGGGAAACTCAGAGAGGCAGTGAAAAGTCCAAGGAAAATGAAGTTCAGTGGATGCC
                      ____________________________________________________________
consensus             CAACAGGGAAACTCAGAGAGGCAGTGAAAAGTCCAAGGAAAATGAAGTTCAGTGGATGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP007G07+           TTTGTTGATAGACATGCAAAGGCCACAATAGGAGGAAAGGAAGGAAAACAAGGAAGAGGA
rJMCP009D12+          TTTGTTGATAGACATGCAAAGGCCACAATAGGAGGAAAGGAAGGAAAACAAGGAAGAGGA
JMCP003C09+           TTTGTTGATAGACATGCAAAGGCCACAATAGGAGGAAAGGAAGGAAAACAAGGAAGAGGA
                      ____________________________________________________________
consensus             TTTGTTGATAGACATGCAAAGGCCACAATAGGAGGAAAGGAAGGAAAACAAGGAAGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP007G07+           GAAGTGCAGAACTTCCCTTGAGAACCTCATTGAGGGGAGCATAGAGAACAGTGACACCGG
rJMCP009D12+          GAAGTGCAGGACTTCCgaaGAGAACCTCtaaGAGGGGAGCATAGAGAACAGTGACACCGc
JMCP003C09+           GAAGTGCAGAACTTCCCTTGAGAACCTCATTGAGGGGAGCATAGAGAACAGTGACACCGG
                      ____________________________________________________________
consensus             GAAGTGCAGAACTTCCCTTGAGAACCTCATTGAGGGGAGCATAGAGAACAGTGACACCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP007G07+           CGACGAGAGTGGTGAGGAGGATCTGAGCGGAGATAATGCCGTAGACTTTGCGGATGAAGC
rJMCP009D12+          CGACGAGAGTGGTGAGGAGGAaCTGAGCGGAGATAATGCCGTAGACTTTGCGGtacAAGC
JMCP003C09+           CGACGAGAGTGGTGAGGAGGATCTGAGCGGAGATAATGCCGatcACTTTGCGGATGAAGC
                      ____________________________________________________________
consensus             CGACGAGAGTGGTGAGGAGGATCTGAGCGGAGATAATGCCGTAGACTTTGCGGATGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP007G07+           CCCAGCGCAGCTGATTCTgcgCGTACCCAATTCCCGGGTACAGAGTCCCTTCCTCGATAT
rJMCP009D12+          CCCAGCGCAcgTGATTCTCGCCGTACCCAATTCCCGGGTACAGAGTCCCTTCCTCGATAT
JMCP003C09+           CCCAGCGCAGCTGATTCTCGCCGTACCCAATTCCCGGGTACAGAGTCCCTTCCTCGATAT
                      ____________________________________________________________
consensus             CCCAGCGCAGCTGATTCTCGCCGTACCCAATTCCCGGGTACAGAGTCCCTTCCTCGATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP007G07+           CGCCTTTCATTCCGCCATCGTAGCTGCTGCTCACACGCTCGAAGCCGTACATCTTC    
rJMCP009D12+          CGCgaaTCATTCCGCCAaCGTAcCTGCTGCTCACACGCTCGAAGCCGTACATCTTC    
JMCP003C09+           CGCCTTTCATTCCGCCATCGTAACTGCTGCTCACACGCTCGAAGCCGTACATCTTCGCTT
                      ____________________________________________________________
consensus             CGCCTTTCATTCCGCCATCGTAGCTGCTGCTCACACGCTCGAAGCCGTACATCTTCGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP003C09+           TCGCTCTCAAGTCTCTCTCTCTCTCTCTAGAGATGTGAACAATCTTGTGCTTTGTTGTAT
                      ____________________________________________________________
consensus             TCGCTCTCAAGTCTCTCTCTCTCTCTCTAGAGATGTGAACAATCTTGTGCTTTGTTGTAT