Contig 004425:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011B20Sequence470003219 (3)ref|XP_008800968.1|1e-46PREDICTED: probable UDP-arabinopyranose mutase 2 [Phoenix dactylifera]575004425 (3)ref|XP_009779067.1|4e-63PREDICTED: probable UDP-arabinopyranose mutase 5 [Nicotiana sylvestris]
JMFF033L15Sequence571003219 (3)ref|XP_007029449.1|8e-68Alpha-1,4-glucan-protein synthase family protein isoform 2 [Theobroma cacao] re699004425 (3)ref|XP_009779067.1|3e-89PREDICTED: probable UDP-arabinopyranose mutase 5 [Nicotiana sylvestris]
JMSF053G01Sequence691003219 (3)ref|XP_007029449.1|2e-99Alpha-1,4-glucan-protein synthase family protein isoform 2 [Theobroma cacao] re858004425 (3)ref|XP_009779067.1|2e-67PREDICTED: probable UDP-arabinopyranose mutase 5 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF033L15+                                                             AAAGGCAGA
                      ____________________________________________________________
consensus                                                                AAAGGCAGA
 
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rJMFF033L15+          GAAACCCCCCGATATGTGGATGCTGTTCTTACCGTCCCAGCTAGGGCCATGATGCCCATG
                      ____________________________________________________________
consensus             GAAACCCCCCGATATGTGGATGCTGTTCTTACCGTCCCAGCTAGGGCCATGATGCCCATG
 
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rJMFF011B20+                                                           TGCCATCTTTC
rJMFF033L15+          AGTGGAATCAACATAGCTTTTAACCGTGAGCTGGTTGGACCTGCCTTGCTGCCATCTTTC
rJMSF053G01+                                                           TGCCATCTTTC
                      ____________________________________________________________
consensus             AGTGGAATCAACATAGCTTTTAACCGTGAGCTGGTTGGACCTGCCTTGCTGCCATCTTTC
 
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rJMFF011B20+          AGGCTGTCAAATGAAGGGAAGTTGAGGGGGGAAACCGTGGAAGATATATGGAGCGGAATG
rJMFF033L15+          AGGCTGTCAAATGAAGGGAAGCTGAGGGGGGAAACCGTGGAAGATATATGGAGCGGAATG
rJMSF053G01+          AGGCTGTCAAATGAAGGGAAGCTGAGGTGGGAAACCGTGGAAGATATATGGAGCGGAATG
                      ____________________________________________________________
consensus             AGGCTGTCAAATGAAGGGAAGCTGAGGGGGGAAACCGTGGAAGATATATGGAGCGGAATG
 
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rJMFF011B20+          TGCGCTAAGGTAGTCTGTGACCATCTAAGGCTCGGTGTGAAAACCGGGCTTCCATNCGTT
rJMFF033L15+          TGCGCTAAGGTAGTCTGTGACCATCTAAGGCTCGGTGTGAAAACCGGGCTTCCATACGTT
rJMSF053G01+          TGCGCTGAGGTAGTCTGTGACCATCTAAGGCTCGGTGTGAAAACCGGGCTTCCATACGTT
                      ____________________________________________________________
consensus             TGCGCTAAGGTAGTCTGTGACCATCTAAGGCTCGGTGTGAAAACCGGGCTTCCATACGTT
 
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rJMFF011B20+          TGGAGGAAGGAAAGAGGCAGTGCCATTGACAGCTTGAAGAAAGAGTGGGAGGGAGTGAAG
rJMFF033L15+          TGGAGGAAGGAAAGAGGCAGTGCCATTGACAGCTTGAAGAAAGAGTGGGAGGGAGTGAAG
rJMSF053G01+          TGGAGGAAGGAAAGAGGCAGTGCCATTGACAGCTTGAAGAAAGAGTGGGAGGGAGTGAAG
                      ____________________________________________________________
consensus             TGGAGGAAGGAAAGAGGCAGTGCCATTGACAGCTTGAAGAAAGAGTGGGAGGGAGTGAAG
 
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rJMFF011B20+          CTGATGGAGGAAGTGATTCCATTCTTCCAAACGGTGAGGCTGTCTCCACAAGCTGTAACA
rJMFF033L15+          CTGATGGAGGAAGTGATTCCATTCTTCCAAACGGTGAGGCTGTCTCCACAAGCTGTAACA
rJMSF053G01+          CTGATGGAGGAAGTGATTCCATTCTTCCAAACGGTGAGGCTGTCTCCACAAGCTGTAACA
                      ____________________________________________________________
consensus             CTGATGGAGGAAGTGATTCCATTCTTCCAAACGGTGAGGCTGTCTCCACAAGCTGTAACA
 
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rJMFF011B20+          GTAGAAGATTGCGTGGTTGAAATCGCCGCAGCTGTGAAGCAGCAGTTGGGACAAAAAGAT
rJMFF033L15+          GTAGAAGATTGCGTGGTTGAAATCGCCGCAGCTGTGAAGCAGCAGTTGGGACAAAAAGAT
rJMSF053G01+          GTAGAAGATTGCGTGGTTGAAATCGCCGCAGCTGTGAAGCAGCAGTTGGGACAAAAAGAT
                      ____________________________________________________________
consensus             GTAGAAGATTGCGTGGTTGAAATCGCCGCAGCTGTGAAGCAGCAGTTGGGACAAAAAGAT
 
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rJMFF011B20+          GCCGTGTTCAAACGTGCTGCTGATGCCATGATAGAATGGATCAAGCCCTGGAAGACCATT
rJMFF033L15+          GCCGTGTTCAAACGTGCTGCTGATGCCATGATAGAATGGATCAAGCCCTGGAAGACCATT
rJMSF053G01+          GCCGTGTTCAAACGTGCTGCTGATGCCATGATAGAATGGATCAAGCTCTGGAAGACCATT
                      ____________________________________________________________
consensus             GCCGTGTTCAAACGTGCTGCTGATGCCATGATAGAATGGATCAAGCCCTGGAAGACCATT
 
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rJMFF011B20+          AAAGCTCAAAGAACTTAAAAGAGTTGTGTTAAGAGTCAAACAGTGGAAATAATTGTCTTT
rJMFF033L15+          AAAGCTCAAAGAACTTAAAAGAGTTGTGTTAAGAGTCAAACAGTGGAAATAATTGTCTTT
rJMSF053G01+          AAAGCTCAAAGAACTTAAAAGAGTTGTGTTAAGAGTCAAACAGTGGAAATAATTGTCTTT
                      ____________________________________________________________
consensus             AAAGCTCAAAGAACTTAAAAGAGTTGTGTTAAGAGTCAAACAGTGGAAATAATTGTCTTT
 
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rJMFF011B20+          ACATAAAGAGAAACTTTGTCCTGTTCACAATTCTTTTGCAACAATAATTATTCTTGGACG
rJMFF033L15+          ACATAAAGAGAAACTTTGTCCTGTTCACAATTCTTTTGCAACAATAATTATTCTTGGACG
rJMSF053G01+          ACATAAAGAGAAACTTTGTCCTGTTCACAATTCTTTTGCAACAATAATTATTCTTGGACG
                      ____________________________________________________________
consensus             ACATAAAGAGAAACTTTGTCCTGTTCACAATTCTTTTGCAACAATAATTATTCTTGGACG
 
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rJMFF011B20+          CTAACCACTTGAAAAGGCACAACTCTCTCACAGACAGAAAGATGGTTAAAGTTGCATACT
rJMFF033L15+          CTAACCACTTGAAAAGGCACAACTCTCTCACAGACAGAAAGATGGTTAAAGTTGCATACT
rJMSF053G01+          CTAACCACTTGAAAAGGCACAACTCTCTCACAGACAGAAAGATGGTTAAAGTTGCATACT
                      ____________________________________________________________
consensus             CTAACCACTTGAAAAGGCACAACTCTCTCACAGACAGAAAGATGGTTAAAGTTGCATACT
 
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rJMFF011B20+          TCATGCAATTTCTACTCAAAATTA                                    
rJMFF033L15+          TCATGCAATTTCTACTCAAAATTA                                    
rJMSF053G01+          TCATGCAATTTCTACTCAAAATTACGGTGATTTTATCTTCAATGACAAGATTCCATGAAA
                      ____________________________________________________________
consensus             TCATGCAATTTCTACTCAAAATTACGGTGATTTTATCTTCAATGACAAGATTCCATGAAA
 
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rJMSF053G01+          CTTCTGCGAGTGCATTTTACCTGCCCGCTGAAAGTGAACATGATTGACACTGCTTTCATT
                      ____________________________________________________________
consensus             CTTCTGCGAGTGCATTTTACCTGCCCGCTGAAAGTGAACATGATTGACACTGCTTTCATT
 
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rJMSF053G01+          TTCAAAATCATGAATGACCAAAAAAACATTTTAAAGAGAACCGAGTGTTAGGACGACGTG
                      ____________________________________________________________
consensus             TTCAAAATCATGAATGACCAAAAAAACATTTTAAAGAGAACCGAGTGTTAGGACGACGTG
 
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rJMSF053G01+          ATATTTTAGATTCAGTTTTAAGGCGTGATATTTTAGATGATTCTGATGATTCTGTCCTGA
                      ____________________________________________________________
consensus             ATATTTTAGATTCAGTTTTAAGGCGTGATATTTTAGATGATTCTGATGATTCTGTCCTGA
 
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rJMSF053G01+          GCCGCTCCCGAGGAATATGTCTGTAGAAAGCTTTTACGGCTCCCATTGCACCATCCTCAT
                      ____________________________________________________________
consensus             GCCGCTCCCGAGGAATATGTCTGTAGAAAGCTTTTACGGCTCCCATTGCACCATCCTCAT