| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003B17 | Sequence | 227 | 004422 (8) | ref|XP_009610046.1| | 85.5 | PREDICTED: uncharacterized protein LOC104103818 [Nicotiana tomentosiformis] | 764 | 004422 (8) | ref|XP_006359266.1| | 221 | PREDICTED: uncharacterized protein LOC102581141 [Solanum tuberosum] |
| JMSF035F17 | Sequence | 671 | 004422 (8) | ref|XP_009610046.1| | 289 | PREDICTED: uncharacterized protein LOC104103818 [Nicotiana tomentosiformis] | 727 | 004422 (8) | ref|XP_006359266.1| | 192 | PREDICTED: uncharacterized protein LOC102581141 [Solanum tuberosum] |
| JMSF036F17 | Sequence | 678 | 004422 (8) | ref|XP_006359266.1| | 144 | PREDICTED: uncharacterized protein LOC102581141 [Solanum tuberosum] | |||||
| JMSF052F12 | Sequence | 670 | 004422 (8) | ref|XP_009610046.1| | 286 | PREDICTED: uncharacterized protein LOC104103818 [Nicotiana tomentosiformis] | |||||
| JMSF052F13 | Sequence | 672 | 004422 (8) | ref|XP_009610046.1| | 291 | PREDICTED: uncharacterized protein LOC104103818 [Nicotiana tomentosiformis] | 905 | 004422 (8) | ref|XP_006359266.1| | 219 | PREDICTED: uncharacterized protein LOC102581141 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF035F17- GGCAGGTT
JMSF052F12- GGCAGGTT
JMSF003B17- GGCAGGTT
JMSF052F13- GGCAGGTT
____________________________________________________________
consensus GGCAGGTT
. : . : . : . : . : . :
JMSF035F17- GAATTGAATCTTTTGGTCTTGAAAGATGAGTGAGTGCATTGCAAATGGGGCAACAAAACT
JMSF052F12- GAATTGAATCTTTTGGTCTTGAAAGATGAGTGAGTGCATTGCAAATGGGGCAACAAAACT
JMSF003B17- GAATTGAATCTTTTGGTCTTGAAAGATGAGTGAGTGCATTGCAAATGGGGCAACAAAACT
JMSF052F13- GAATTGAATCTTTTGGTCTTGAAAGATGAGTGAGTGCATTGCAAATGGGGCAACAAAACT
____________________________________________________________
consensus GAATTGAATCTTTTGGTCTTGAAAGATGAGTGAGTGCATTGCAAATGGGGCAACAAAACT
. : . : . : . : . : . :
JMSF035F17- GCAGATTGAGGCAATGCAGACAGTAATGCCTCTGAAGCCAACTGATCCTCGGCACTCCCA
JMSF052F12- GCANATTGAGGCAATGCAGACAGTAATGCCTCTGAAGCCAACTGATCCTCGGCACTCCCA
JMSF003B17- GCAGATTGAGGCAATGCAGACAGTAATGCCTCTGAAGCCAACTGATCCTCGGCACTCCCA
JMSF052F13- GCAGATTGAGGCAATGCAGACAGTAATGCCTCTGAAGCCAACTGATCCTCGGCACTCCCA
____________________________________________________________
consensus GCAGATTGAGGCAATGCAGACAGTAATGCCTCTGAAGCCAACTGATCCTCGGCACTCCCA
. : . : . : . : . : . :
JMSF035F17- CCGTGTTTCGGTCCCAGAAAACCACGGCCCCGGCGGCAGCTTCCGGCGGCGGTTCCACAT
JMSF052F12- CCGTGTTTCGGTCCCAGAAAACCACGGCCCCGGCGGCAGCTTCCGGCGGCGGTTCCACAT
JMSF003B17- CCGTGTTTCGGTCCCAGAAAACCACGGCCCCGGCGGCAGCTTCCGGCGGCGGTTCCACAT
JMSF052F13- CCGTGTTTCGGTCCCAGAAAACCACGGCCCCGGCGGCAGCTTCCGGCGGCGGTTCCACAT
____________________________________________________________
consensus CCGTGTTTCGGTCCCAGAAAACCACGGCCCCGGCGGCAGCTTCCGGCGGCGGTTCCACAT
. : . : . : . : . : . :
JMSF035F17- GATACTGTGCTACAACAAGGCCTCCGACGATGACTCAGGGTGGATAGTAGCAGGTTGGAT
JMSF052F12- GATACTGTGCTACAACAAGGCCTCCGACGATGACTCAGGGTGGATAGTAGCAGGTTGGAT
JMSF003B17- GATACTGTGCTACAACAAGGCCTCCGACGATGACTCAGG
JMSF052F13- GATACTGTGCTACAACAAGGCCTCCGACGATGACTCAGGGTGGATAGTAGCAGGTTGGAT
____________________________________________________________
consensus GATACTGTGCTACAACAAGGCCTCCGACGATGACTCAGGGTGGATAGTAGCAGGTTGGAT
. : . : . : . : . : . :
JMSF035F17- CAAGGAATCACTTGGAAGGGCACTTATTGAGAACCCAGTGCTTGCTGGCAGACTGAGAAA
JMSF052F12- CAAGGAATCACTTGGAAGGGCACTTATTGAGAACCCAGTGCTTGCTGGCAGACTGAGAAA
JMSF052F13- CAAGGAATCACTTGGAAGGGCACTTATTGAGAACCCAGTGCTTGCTGGCAGACTGAGAAA
____________________________________________________________
consensus CAAGGAATCACTTGGAAGGGCACTTATTGAGAACCCAGTGCTTGCTGGCAGACTGAGAAA
. : . : . : . : . : . :
JMSF035F17- AGGGGAAGATAATGGTGGTTCTGGGGATATGGAGATTGTTTCAAATGATTGTGGGGTTAG
JMSF052F12- AGGGGAAGATAATGGTGGTTCTGGGGATATGGAGATTGTTTCAAATGATTGTGGGGTTAG
JMSF052F13- AGGGGAAGATAATGGTGGTTCTGGGGATATGGAGATTGTTTCAAATGATTGTGGGGTTAG
____________________________________________________________
consensus AGGGGAAGATAATGGTGGTTCTGGGGATATGGAGATTGTTTCAAATGATTGTGGGGTTAG
. : . : . : . : . : . :
JMSF035F17- AATGTTGGAGGCTCAGATCAATATCTCCTTGGCTCAGTTTCTTGGCCTCAAACACAAGAG
JMSF052F12- AATGTTGGAGGCTCAGATCAATATCTCCTTGGCTCAGTTTCTTGGCCTCAAACACAAGAG
JMSF052F13- AATGTTGGAGGCTCAGATCAATATCTCCTTGGCTCAGTTTCTTGGCCTCAAACACAAGAG
____________________________________________________________
consensus AATGTTGGAGGCTCAGATCAATATCTCCTTGGCTCAGTTTCTTGGCCTCAAACACAAGAG
. : . : . : . : . : . :
JMSF035F17- AGTTGCAGAATCTGAGCTTGTGTTTTGGGAGGATGTTCAAGAATCAACCCCTCAGTACTG
JMSF052F12- AGTTGCAGAATCTGAGCTTGTGTTTTGGGAGGATGTTCAAGAATCAACCCCTCAGTACTG
JMSF052F13- AGTTGCAGAATCTGAGCTTGTGTTTTGGGAGGATGTTCAAGAATCAACCCCTCAGTACTG
rJMSF003B17+ ATCAACCCCTCAGTACTG
rJMSF052F13+ GTACTG
____________________________________________________________
consensus AGTTGCAGAATCTGAGCTTGTGTTTTGGGAGGATGTTCAAGAATCAACCCCTCAGTACTG
. : . : . : . : . : . :
JMSF035F17- TCCATTGTTTTACATTCAGGTGACAAATTTCAACTGTGGTGGATACTCAATAGGGATAAG
JMSF052F12- TCCATTGTTTTACATTCAGGTGACAAATTTCAACTGTGGTGGATACTCAATAGGGATAAG
JMSF052F13- TCCATTGTTTTACATTCAGGTGACAAATTTCAACTGTGGTGGATACTCAATAGGGATAAG
rJMSF003B17+ TCCATTGTTTTACATTCAGGTGACAAATTTCAACTGTGGTGGATACTCAATAGGGATAAG
rJMSF035F17+ GGATACTCAATAGGGATAAG
rJMSF052F13+ TCCATTGTTTTACATTCAGGTGACAAATTTCAACTGTGGTGGATACTCAATAGGGATAAG
____________________________________________________________
consensus TCCATTGTTTTACATTCAGGTGACAAATTTCAACTGTGGTGGATACTCAATAGGGATAAG
. : . : . : . : . : . :
JMSF035F17- TTGCAGCCTATTTCTGGCAGATCCATTTAGCATGACAAGTTTCCTCAATAAATGGTCAAA
JMSF052F12- TTGCAGCCTATTTCTGGCAGATCCATTTANCATGACNAGTTTCCTCAATAAATGGTCAAA
JMSF052F13- TTGCAGCCTATTTCTGGCAGATCCATTTAGCATGACAAGTTTCCTCAATAAATGGTCAAA
rJMSF003B17+ TTGCAGCCTATTTCTGGCAGATCCATTTAGCATGACAAGTTTCCTCAATAAATGGTCAAA
rJMSF035F17+ TTGCAGCCTATTTCTGGCAGATCCATTTAGCATGACAAGTTTCCTCAATAAATGGTCAAA
rJMSF036F17+ CCTCAATAAATGGTCAAA
rJMSF052F13+ TTGCAGCCTATTTCTGGCAGATCCATTTAGCATGACAAGTTTCCTCAATAAATGGTCAAA
____________________________________________________________
consensus TTGCAGCCTATTTCTGGCAGATCCATTTAGCATGACAAGTTTCCTCAATAAATGGTCAAA
. : . : . : . : . : . :
JMSF035F17- AATT-CACTGCACCATGCTCTCACAAGTTGATAAACCCAACAAAATCCCTACGTTTTACT
JMSF052F12- AATT-CACTGCACCATGCTCTCACAAGTTGATAAACCCAACAAAATCCCTACGTTTTACT
JMSF052F13- AATT-CACTGCACCATGCTCTCACAAGTTGATAAACCCAACAAAATCCCTACGTTTTACT
rJMSF003B17+ AATT-CACTGCACCATGCTCTCACAAGTTGATAAACCCAACAAAATCCCTACGTTTTACT
rJMSF035F17+ AATT-CACTGCACCATGCTCTCACAAGTTGATAAACCCAACAAAATCCCTACGTTTTACT
rJMSF036F17+ AATTCCACTGCACCATGCTCTCACAAGTTGATAAACCCAACAAAATCCCTACGTTTTACT
rJMSF052F13+ AATT-CACTGCACCATGCTCTCACAAGTTGATAAACCCAACAAAATCCCTACGTTTTACT
____________________________________________________________
consensus AATT-CACTGCACCATGCTCTCACAAGTTGATAAACCCAACAAAATCCCTACGTTTTACT
. : . : . : . : . : . :
JMSF035F17- TCCC
JMSF052F12- TCC
JMSF052F13- TCCCA
rJMSF003B17+ TCCCAAACCTCAGAAAACCTGGTACTTTACCCACTCATGTTCCCCTGGACTCCTCATCAA
rJMSF035F17+ TCCCAAACCTCAGAAAACCTGGTACTTTACCCACTCATGTTCCCCTGGACTCCTCATCAA
rJMSF036F17+ TCCCAAACCTCAGAAAACCTGGTACTTTACCCACTCATGTTCCCCTGGACTCCTCATCAA
rJMSF052F13+ TCCCAAACCTCAGAAAACCTGGTACTTTACCCACTCATGTTCCCCTGGACTCCTCATCAA
____________________________________________________________
consensus TCCCAAACCTCAGAAAACCTGGTACTTTACCCACTCATGTTCCCCTGGACTCCTCATCAA
. : . : . : . : . : . :
rJMSF003B17+ CTAATGATAATCACCCTGCAGCTACTACCAAAACTGTAATCTTCAGACTCCCCACAAAGA
rJMSF035F17+ CTAATGATAATCACCCTGCAGCTACTACCAAAACTGTAATCTTCAGACTCCCCACAAAGA
rJMSF036F17+ CTAATGATAATCACCCNGCAGCTANTACCAAAACTGTAATCTTCAGACTCCCCACAAAGA
rJMSF052F13+ CTAATGATAATCACCCTGCAGCTACTACCAAAACTGTAATCTTCAGACTCCCCACAAAGA
____________________________________________________________
consensus CTAATGATAATCACCCTGCAGCTACTACCAAAACTGTAATCTTCAGACTCCCCACAAAGA
. : . : . : . : . : . :
rJMSF003B17+ TCTCGAATTCCGACAAAGAGATCCACAAGACCCTTGCTGCCAAATGCATAGAAGAGGCCG
rJMSF035F17+ TCTCGAATTCCGACAAAGAGATCCACAAGACCCTTGCTGCCAAATGCATAGAAGAGGCCG
rJMSF036F17+ TCTCGAATTCCGACAAAGAGATCCACAAGACCCTTGCTGCCAAATGCATAGAAGAGGCCG
rJMSF052F13+ TCTCGAATTCCGACAAAGAGATCCACAAGACCCTTGCTGCCAAATGCATAGAAGAGGCCG
____________________________________________________________
consensus TCTCGAATTCCGACAAAGAGATCCACAAGACCCTTGCTGCCAAATGCATAGAAGAGGCCG
. : . : . : . : . : . :
rJMSF003B17+ AAAACAAGACTTCCAAGAGGTTGTCTTCGAGGTTCACTATGTTCTTGAAAGATTCCTCGG
rJMSF035F17+ AAAACAAGACTTCCAAGAGGTTGTCTTCGAGGTTCACTATGTTCTTGAAAGATTCCTCGG
rJMSF036F17+ AAAACAAGACTTCCAAGAGGTTGTCTTCGAGGTTCACTATGTTCTTGAAAGATTCCTCGG
rJMSF052F13+ AAAACAAGACTTCCAAGAGGTTGTCTTCGAGGTTCACTATGTTCTTGAAAGATTCCTCGG
____________________________________________________________
consensus AAAACAAGACTTCCAAGAGGTTGTCTTCGAGGTTCACTATGTTCTTGAAAGATTCCTCGG
. : . : . : . : . : . :
rJMSF003B17+ AAGATGTAAAGGTAGAGAGTTGGTTAACAGAGGATGTTTTTCAGAAGTCATTTTCTGGTT
rJMSF035F17+ AAGATGTAAAGGTAGAGAGTTGGTTAACAGAGGATGTTTTTCAGAAGTCATTTTCTGGTT
rJMSF036F17+ AAGATGTAAAGGTAGAGAGTTGGTTAACAGAGGATGTTTTTCAGAAGTCATTTTCTGGTT
rJMSF052F13+ AAGATGTAAAGGTAGAGAGTTGGTTAACAGAGGATGTTTTTCAGAAGTCATTTTCTGGTT
____________________________________________________________
consensus AAGATGTAAAGGTAGAGAGTTGGTTAACAGAGGATGTTTTTCAGAAGTCATTTTCTGGTT
. : . : . : . : . : . :
rJMSF003B17+ TAATCAGCGGAGTTGATTCTCTGAGCTGGGAAGATTTAGGGATTGACAAAATTTGCTTCA
rJMSF035F17+ TAATCAGCGGAGTTGATTCTCTGAGCTGGGAAGATTTAGGGATTGACAAAATTTGCTTCA
rJMSF036F17+ TAATCAGCGGAGTTGATTCTCTGAGCTGGGAAGATTTAGGGATTGACAAAATTTGCTTCA
rJMSF052F13+ TAATCAGCGGAGTTGATTCTCTGAGCTGGGAAGATTTAGGGATTGACAAAATTTGCTTCA
____________________________________________________________
consensus TAATCAGCGGAGTTGATTCTCTGAGCTGGGAAGATTTAGGGATTGACAAAATTTGCTTCA
. : . : . : . : . : . :
rJMSF003B17+ AAGAGGATAACAAGGCTGTCTATTTCTCATGTTGGATTAGCTCAATATTTGGTGAAGACT
rJMSF035F17+ AAGAGGATAACAAGGCTGTCTATTTCTCATGTTGGATTAGCTCAATATTTGGTGAAGACT
rJMSF036F17+ AAGAGGATAACAAGGCTGTCTATTTCTCATGTTGGATTAGCTCAATATTTGGTGAAGACT
rJMSF052F13+ AAGAGGATAACAAGGCTGTCTATTTCTCATGTTGGATTAGCTCAATATTTGGTGAAGACT
____________________________________________________________
consensus AAGAGGATAACAAGGCTGTCTATTTCTCATGTTGGATTAGCTCAATATTTGGTGAAGACT
. : . : . : . : . : . :
rJMSF003B17+ TTGTGATGATTGTTCCATCTACTGATGATGATGAGGGAAGGTCTGGTGGACACAATATTA
rJMSF035F17+ TTGTGATGATTGTTCCATCTACTGATGATGATGAGGGAAGGTCTGGTGGACACAATATTA
rJMSF036F17+ TTGTGATGATTGTTCCATCTACTGATGATGATGAGGGAAGGTCTGGTGGACACAATATTA
rJMSF052F13+ TTGTGATGATTGTTCCATCTACTGATGATGATGAGGGAAGGTCTGGTGGACACAATATTA
____________________________________________________________
consensus TTGTGATGATTGTTCCATCTACTGATGATGATGAGGGAAGGTCTGGTGGACACAATATTA
. : . : . : . : . : . :
rJMSF003B17+ TTGTCACAATTTCTGATTAGAGGACAACTTTTCATTTTTATCACTTCAAAACATTTATAT
rJMSF035F17+ TTGTCACAATTTCTGATTAGAGGACAACTTTTCATTTTTATCACTTCAAAACATTTATAT
rJMSF036F17+ TTGTCACAATTTCTGATTAGAGGACAACTTTTCATTTTTATCACTTCAAAACATTTATAT
rJMSF052F13+ TTGTCACAATTTCTGATTAGAGGACAACTTTTCATTTTTATCACTTCAAAACATTTATAT
____________________________________________________________
consensus TTGTCACAATTTCTGATTAGAGGACAACTTTTCATTTTTATCACTTCAAAACATTTATAT
. : . : . : . : . : . :
rJMSF003B17+ TGGCTTAAAGTTAGGCCCCTCTA
rJMSF035F17+ TGGCTTAAAGTTAGGCCCCTCTAATAAAATAGAGGTTTTCGTGTGCTC
rJMSF036F17+ TGGCTTAAAGTTAGGCCCCTCTAATAAAATAGAGGTTTTCGTGTGCTCATT
rJMSF052F13+ TGGCTTAAAGTTAGGCCCCTCTAATAAAATAGAGGTTTTCGTGTGCTCATTTGAATTTAT
____________________________________________________________
consensus TGGCTTAAAGTTAGGCCCCTCTAATAAAATAGAGGTTTTCGTGTGCTCATTTGAATTTAT
. : . : . : . : . : . :
rJMSF052F13+ CTTGGCCTTGATAAGATTCTACTTGATTATTGGTTGAGGGCAAANTATGGTTCACACAAC
____________________________________________________________
consensus CTTGGCCTTGATAAGATTCTACTTGATTATTGGTTGAGGGCAAANTATGGTTCACACAAC
. : . : . : . : . : . :
rJMSF052F13+ GCTACGTGGACCATAACAAAATGTACATTTATAATATACTAAATGTACACTATTTGTGTA
____________________________________________________________
consensus GCTACGTGGACCATAACAAAATGTACATTTATAATATACTAAATGTACACTATTTGTGTA