Contig 004419:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF051K03Sequence682004419 (2)ref|XP_009631316.1|1e-80PREDICTED: zinc finger protein CONSTANS-like [Nicotiana tomentosiformis]748004419 (2)ref|XP_009631316.1|4e-98PREDICTED: zinc finger protein CONSTANS-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF051K03-                                             GAGCCAATCCAACAATTTTTTCTTCT
                      ____________________________________________________________
consensus                                               GAGCCAATCCAACAATTTTTTCTTCT
 
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JMSF051K03-           CACTGTTCGACCTGTCAACCTTTAGCCCACAATCACATACATACAGATTCACCCACTTCC
                      ____________________________________________________________
consensus             CACTGTTCGACCTGTCAACCTTTAGCCCACAATCACATACATACAGATTCACCCACTTCC
 
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JMSF051K03-           TGTTTCTTTGTGAGGGCGGCTGTTTTGAATCGGATGCTATTTTTGTGACGGACGACGGCG
                      ____________________________________________________________
consensus             TGTTTCTTTGTGAGGGCGGCTGTTTTGAATCGGATGCTATTTTTGTGACGGACGACGGCG
 
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JMSF051K03-           AATGATGGCGCGGTCTGGGTGGAATCGTGGAAGAAGATGAGAGCTGAGGAAGGGTCAGAG
                      ____________________________________________________________
consensus             AATGATGGCGCGGTCTGGGTGGAATCGTGGAAGAAGATGAGAGCTGAGGAAGGGTCAGAG
 
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JMSF051K03-           AGAGGGTGAATAAATAAATAAACAAAATTAAACTGCGAGAGAGAATGAGAACGTTGTGTG
                      ____________________________________________________________
consensus             AGAGGGTGAATAAATAAATAAACAAAATTAAACTGCGAGAGAGAATGAGAACGTTGTGTG
 
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JMSF051K03-           ATGCTTGTGAGAGCGCTGCCGCCATACTCTTCTGCGCCGCCGACGAGGCTGCTCTTTGCC
rJMSF051K03+                                          TGCGCCGCCGACGAGGCTGCTTTTTGCC
                      ____________________________________________________________
consensus             ATGCTTGTGAGAGCGCTGCCGCCATACTCTTCTGCGCCGCCGACGAGGCTGCTTTTTGCC
 
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JMSF051K03-           GTGCTTGCGATGAAAAAGTCCATATGTGTAACAAGCTTGCCAGTAGACACGTACGAGTTG
rJMSF051K03+          GTGCTTGCGATGAAAAAGTCCATATGTGTAACAAGCTTGCCAGTAGACACGTACGAGTTG
                      ____________________________________________________________
consensus             GTGCTTGCGATGAAAAAGTCCATATGTGTAACAAGCTTGCCAGTAGACACGTACGAGTTG
 
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JMSF051K03-           GGCTTGCTGACCCCAGCAAAGTCCAACGTTGTGATATATGCGAAAATGCACCCGCTTTCT
rJMSF051K03+          GGCTTGCTGACCCCAGCAAAGTCCAACGTTGTGATATATGCGAAAATGCACCCGCTTTCT
                      ____________________________________________________________
consensus             GGCTTGCTGACCCCAGCAAAGTCCAACGTTGTGATATATGCGAAAATGCACCCGCTTTCT
 
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JMSF051K03-           TTTACTGTGAGATAGATGGAAGTTCACTATGTTTGCAATGTGATATGATGGTTCATGTTG
rJMSF051K03+          TTTACTGTGAGATAGATGGAAGTTCACTATGTTTGCAATGTGATATGATGGTTCATGTTG
                      ____________________________________________________________
consensus             TTTACTGTGAGATAGATGGAAGTTCACTATGTTTGCAATGTGATATGATGGTTCATGTTG
 
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JMSF051K03-           GAGGTAAAAGAACACATGGAAGATATCTCCTTATAAGACAGAGAATTGAGTTTCCTGGGG
rJMSF051K03+          GAGGTAAAAGAACACATGGAAGATATCTCCTTATAAGACAGAGAATTGAGTTTCCTGGGG
                      ____________________________________________________________
consensus             GAGGTAAAAGAACACATGGAAGATATCTCCTTATAAGACAGAGAATTGAGTTTCCTGGGG
 
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JMSF051K03-           ATAAATCTGGCCAATTAGATGAGCCAGGACTACNACCTACCGAAAAAGCTGAACCAAGGC
rJMSF051K03+          ATAAATCTGGCCAATTAGATGAGCCAGGACTACAACCTACCGAAAAAGCTGAACCAAGGC
                      ____________________________________________________________
consensus             ATAAATCTGGCCAATTAGATGAGCCAGGACTACAACCTACCGAAAAAGCTGAACCAAGGC
 
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JMSF051K03-           GGGAGCCAAATCACCCATTTAAGCTCATGATGAAAGAGAACAAACCAACTAACAGG    
rJMSF051K03+          GGGAGCCAAATCACCCATTTAAGCTCATGATGAAAGAGAACAAACCAACTAACAGGGACG
                      ____________________________________________________________
consensus             GGGAGCCAAATCACCCATTTAAGCTCATGATGAAAGAGAACAAACCAACTAACAGGGACG
 
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rJMSF051K03+          GTGCTGTTGCTATGCTAGACAAAAATGCTGATGTTGGTAGCAAAATGGAGAATAAACTGA
                      ____________________________________________________________
consensus             GTGCTGTTGCTATGCTAGACAAAAATGCTGATGTTGGTAGCAAAATGGAGAATAAACTGA
 
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rJMSF051K03+          TTGATCTCAATACTAGACCTCATAGAATGCATGGTCAAGCTTCTGCTAACCAGGAACCAG
                      ____________________________________________________________
consensus             TTGATCTCAATACTAGACCTCATAGAATGCATGGTCAAGCTTCTGCTAACCAGGAACCAG
 
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rJMSF051K03+          GAATCGACGGGCTTAGTGATAACAACCACGAGCCAGGCTGTGTAATCCCTATTGGACCCT
                      ____________________________________________________________
consensus             GAATCGACGGGCTTAGTGATAACAACCACGAGCCAGGCTGTGTAATCCCTATTGGACCCT
 
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rJMSF051K03+          TGAAAAGAGAGACAGAAAAGTGATTTAGTTTGTTTTCTAGGGAAGGAAAGCGGGATTAGA
                      ____________________________________________________________
consensus             TGAAAAGAGAGACAGAAAAGTGATTTAGTTTGTTTTCTAGGGAAGGAAAGCGGGATTAGA
 
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rJMSF051K03+          AGGGGAAAAGAGATTGAAGGATGATAAGTGATATAGTACATGCTGCTACATTTGGATTTG
                      ____________________________________________________________
consensus             AGGGGAAAAGAGATTGAAGGATGATAAGTGATATAGTACATGCTGCTACATTTGGATTTG
 
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rJMSF051K03+          AAAATGTACCAAGACATTTGGATTAGAAATCATTTTGCTGCCACCTTATTCCCGCAAATA
                      ____________________________________________________________
consensus             AAAATGTACCAAGACATTTGGATTAGAAATCATTTTGCTGCCACCTTATTCCCGCAAATA