Contig 004417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004I07Sequence487004417 (4)539004417 (4)
JMSF051D15Sequence449004417 (4)582004417 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF004I07- ATATTGAAAGGAACATGC
rJMSF051D15- ATTCAGACACATGGCACAAGAAACATATTGAAAGGAACATGC
                      ____________________________________________________________
consensus ATTCAGACACATGGCACAAGAAACATATTGAAAGGAACATGC
 
. : . : . : . : . : . :
rJMFF004I07- CTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTCCAA
JMFF004I07+ TTAACACACACATACATTCTCCAA
rJMSF051D15- CTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTCCAA
                      ____________________________________________________________
consensus CTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTCCAA
 
. : . : . : . : . : . :
rJMFF004I07- AACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATACAT
JMFF004I07+ AACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATACAT
JMSF051D15+ CACATACATTACATATATATACATACAT
rJMSF051D15- AACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATACAT
                      ____________________________________________________________
consensus AACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATACAT
 
. : . : . : . : . : . :
rJMFF004I07- ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
JMFF004I07+ ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
JMSF051D15+ ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
rJMSF051D15- ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
                      ____________________________________________________________
consensus ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
 
. : . : . : . : . : . :
rJMFF004I07- TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
JMFF004I07+ TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
JMSF051D15+ TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
rJMSF051D15- TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
                      ____________________________________________________________
consensus TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
 
. : . : . : . : . : . :
rJMFF004I07- ACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGAATGTTTTTGCCATGAT
JMFF004I07+ ACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGAATGTTTTTGCCATGAT
JMSF051D15+ ACGGTTGATGTGGACTTCCCTTTTCTCCCAGCTGTTCTGTCTGAATGTTTTTGCCATGAT
rJMSF051D15- ACGGTTGATGTGGACTTCCCTTTTCTCCCAGCTGTTCTGTCTGAATGTTTTTGCCATGAT
                      ____________________________________________________________
consensus ACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGAATGTTTTTGCCATGAT
 
. : . : . : . : . : . :
rJMFF004I07- TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
JMFF004I07+ TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
JMSF051D15+ TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
rJMSF051D15- TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
                      ____________________________________________________________
consensus TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
 
. : . : . : . : . : . :
rJMFF004I07- GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
JMFF004I07+ GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
JMSF051D15+ GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
rJMSF051D15- GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
                      ____________________________________________________________
consensus GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
 
. : . : . : . : . : . :
rJMFF004I07- CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
JMFF004I07+ CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
JMSF051D15+ CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
rJMSF051D15- CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
                      ____________________________________________________________
consensus CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
 
. : . : . : . : . : . :
rJMFF004I07- AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAA
JMFF004I07+ AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAA
JMSF051D15+ AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTT
rJMSF051D15- AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTCC
                      ____________________________________________________________
consensus AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTCC