Contig 004417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004I07Sequence487004417 (4)539004417 (4)
JMSF051D15Sequence449004417 (4)582004417 (4)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-                                                    ATATTGAAAGGAACATGC
rJMSF051D15-                            ATTCAGACACATGGCACAAGAAACATATTGAAAGGAACATGC
                      ____________________________________________________________
consensus                               ATTCAGACACATGGCACAAGAAACATATTGAAAGGAACATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          CTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTCCAA
JMFF004I07+                                               TTAACACACACATACATTCTCCAA
rJMSF051D15-          CTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTCCAA
                      ____________________________________________________________
consensus             CTCCTTTCTTAGCCTTATTTTTAAAAGATCTATTCCTTAACACACACATACATTCTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          AACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATACAT
JMFF004I07+           AACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATACAT
JMSF051D15+                                           CACATACATTACATATATATACATACAT
rJMSF051D15-          AACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATACAT
                      ____________________________________________________________
consensus             AACAAACACACAAACATACATCCATCCATACACACATACATTACATATATATACATACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
JMFF004I07+           ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
JMSF051D15+           ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
rJMSF051D15-          ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
                      ____________________________________________________________
consensus             ACATACATACTCCGTATATAATAAAGTTGAAAGGGACATGCCCCTTCCTTAGTCTTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
JMFF004I07+           TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
JMSF051D15+           TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
rJMSF051D15-          TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
                      ____________________________________________________________
consensus             TTCAAGAGTAGTTATCACTTCATCACCCTAGTCTCCTTCAGTGCCCAAATGTCAAAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          ACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGAATGTTTTTGCCATGAT
JMFF004I07+           ACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGAATGTTTTTGCCATGAT
JMSF051D15+           ACGGTTGATGTGGACTTCCCTTTTCTCCCAGCTGTTCTGTCTGAATGTTTTTGCCATGAT
rJMSF051D15-          ACGGTTGATGTGGACTTCCCTTTTCTCCCAGCTGTTCTGTCTGAATGTTTTTGCCATGAT
                      ____________________________________________________________
consensus             ACGGTTGATGTGGACTTCCCTTTTCTCCCAGTTGTTCTGTCTGAATGTTTTTGCCATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
JMFF004I07+           TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
JMSF051D15+           TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
rJMSF051D15-          TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
                      ____________________________________________________________
consensus             TTGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
JMFF004I07+           GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
JMSF051D15+           GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
rJMSF051D15-          GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
                      ____________________________________________________________
consensus             GTCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
JMFF004I07+           CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
JMSF051D15+           CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
rJMSF051D15-          CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
                      ____________________________________________________________
consensus             CACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I07-          AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAA                   
JMFF004I07+           AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAA                   
JMSF051D15+           AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTT  
rJMSF051D15-          AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTCC
                      ____________________________________________________________
consensus             AATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTCC